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Brandon D Walker - Publications

Affiliations: 
University of Texas at Austin, Austin, Texas, U.S.A. 
Area:
Computational Chemistry, Computational Biomolecular Engineering
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13/120 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Arabzadeh H, Walker B, Sperling JM, Acevedo O, Ren P, Yang W, Albrecht-Schönzart TE. Molecular Dynamics and Free Energy Calculations of Dicyclohexano-18-crown-6 Diastereoisomers with Sm, Eu, Dy, Yb, Cf, and Three Halide Salts in Tetrahydrofuran and Acetonitrile Using the AMOEBA Force Field. The Journal of Physical Chemistry. B. 126: 10721-10731. PMID 36508277 DOI: 10.1021/acs.jpcb.2c04613  0.565
2022 Wang Y, Walker BD, Liu C, Ren P. An Efficient Approach to Large-Scale Ab Initio Conformational Energy Profiles of Small Molecules. Molecules (Basel, Switzerland). 27. PMID 36500658 DOI: 10.3390/molecules27238567  0.61
2022 Walker B, Liu C, Wait E, Ren P. Automation of AMOEBA polarizable force field for small molecules: Poltype 2. Journal of Computational Chemistry. PMID 35778723 DOI: 10.1002/jcc.26954  0.629
2022 Yang X, Liu C, Walker BD, Ren P. Accurate description of molecular dipole surface with charge flux implemented for molecular mechanics. The Journal of Chemical Physics. 153: 064103. PMID 35287459 DOI: 10.1063/5.0016376  0.61
2021 He X, Walker B, Man VH, Ren P, Wang J. Recent progress in general force fields of small molecules. Current Opinion in Structural Biology. 72: 187-193. PMID 34942567 DOI: 10.1016/j.sbi.2021.11.011  0.583
2021 Kilgour M, Liu T, Walker BD, Ren P, Simine L. E2EDNA: Simulation Protocol for DNA Aptamers with Ligands. Journal of Chemical Information and Modeling. PMID 34435773 DOI: 10.1021/acs.jcim.1c00696  0.488
2021 Walker B, Jing Z, Ren P. Molecular dynamics free energy simulations of ATP:Mg and ADP:Mg using the polarizable force field AMOEBA. Molecular Simulation. 47: 439-448. PMID 34421214 DOI: 10.1080/08927022.2020.1725003  0.655
2021 Corrigan RA, Qi G, Thiel AC, Lynn JR, Walker BD, Casavant TL, Lagardere L, Piquemal JP, Ponder JW, Ren P, Schnieders MJ. Implicit Solvents for the Polarizable Atomic Multipole AMOEBA Force Field. Journal of Chemical Theory and Computation. PMID 33769814 DOI: 10.1021/acs.jctc.0c01286  0.673
2020 Walker B, Jing Z, Ren P. Molecular dynamics free energy simulations of ATP:Mg2+ and ADP:Mg2+ using the polarisable force field AMOEBA Molecular Simulation. 1-10. DOI: 10.1080/08927022.2020.1725003  0.639
2020 Yang X, Liu C, Walker BD, Ren P. Accurate description of molecular dipole surface with charge flux implemented for molecular mechanics Journal of Chemical Physics. 153: 64103. DOI: 10.1063/5.0016376  0.565
2019 Qi R, Walker B, Jing Z, Yu M, Stancu G, Edupuganti R, Dalby KN, Ren P. Computational and Experimental Studies of Inhibitor Design for Aldolase A. The Journal of Physical Chemistry. B. PMID 31268712 DOI: 10.1021/Acs.Jpcb.9B04551  0.648
2019 Harger M, Lee JH, Walker B, Taliaferro JM, Edupuganti R, Dalby KN, Ren P. Computational insights into the binding of IN17 inhibitors to MELK. Journal of Molecular Modeling. 25: 151. PMID 31069524 DOI: 10.1007/S00894-019-4036-1  0.576
2019 Jing Z, Liu C, Cheng SY, Qi R, Walker BD, Piquemal JP, Ren P. Polarizable Force Fields for Biomolecular Simulations: Recent Advances and Applications. Annual Review of Biophysics. PMID 30916997 DOI: 10.1146/Annurev-Biophys-070317-033349  0.654
Low-probability matches (unlikely to be authored by this person)
2018 Cheng HD, Grimm SK, Gilman MS, Gwom LC, Sok D, Sundling C, Donofrio G, Hedestam GBK, Bonsignori M, Haynes BF, Lahey TP, Maro I, von Reyn CF, Gorny MK, Zolla-Pazner S, Walker BD, et al. Fine epitope signature of antibody neutralization breadth at the HIV-1 envelope CD4-binding site. Jci Insight. 3. PMID 29515029 DOI: 10.1172/Jci.Insight.97018  0.143
2020 Kazer SW, Aicher TP, Muema DM, Carroll SL, Ordovas-Montanes J, Miao VN, Tu AA, Ziegler CGK, Nyquist SK, Wong EB, Ismail N, Dong M, Moodley A, Berger B, Love JC, ... Walker BD, et al. Integrated single-cell analysis of multicellular immune dynamics during hyperacute HIV-1 infection. Nature Medicine. PMID 32251406 DOI: 10.1038/S41591-020-0799-2  0.14
2018 Walker BD, Chua MD, Guttman JA. Hsc70 is a component of bacterially generated Actin-Rich Structures; an immunolocalization study. Anatomical Record (Hoboken, N.J. : 2007). PMID 30312532 DOI: 10.1002/Ar.23955  0.133
2015 Dennany L, Kennedy AR, Walker B. The hydrochloride and hydrobromide salt forms of (S)-amphetamine. Acta Crystallographica. Section C, Structural Chemistry. 71: 844-9. PMID 26422209 DOI: 10.1107/S2053229615015867  0.13
2018 Siciliano V, DiAndreth B, Monel B, Beal J, Huh J, Clayton KL, Wroblewska L, McKeon A, Walker BD, Weiss R. Engineering modular intracellular protein sensor-actuator devices. Nature Communications. 9: 1881. PMID 29760420 DOI: 10.1038/S41467-018-03984-5  0.128
2016 Kleinsteuber K, Corleis B, Rashidi N, Nchinda N, Lisanti A, Cho JL, Medoff BD, Kwon D, Walker BD. Standardization and quality control for high-dimensional mass cytometry studies of human samples. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. PMID 27575385 DOI: 10.1002/cyto.a.22935  0.108
2017 Beyrer C, Shisana O, Baral SD, Milsana K, Mayer KH, Pozniak A, Walker BD, Mboup S, Sohn AH, Serwadda D, Rees H, Dvoriak S, Warren M, Thiam S, El-Sadr WM, et al. The science of Durban, AIDS 2016. Journal of the International Aids Society. 20: 1-7. PMID 28692209 DOI: 10.7448/IAS.20.1.21781  0.104
2018 Alter G, Dowell KG, Brown EP, Suscovich TJ, Mikhailova A, Mahan AE, Walker BD, Nimmerjahn F, Bailey-Kellogg C, Ackerman ME. High-resolution definition of humoral immune response correlates of effective immunity against HIV. Molecular Systems Biology. 14: e7881. PMID 29581149 DOI: 10.15252/Msb.20177881  0.1
2016 Park RJ, Wang T, Koundakjian D, Hultquist JF, Lamothe-Molina P, Monel B, Schumann K, Yu H, Krupzcak KM, Garcia-Beltran W, Piechocka-Trocha A, Krogan NJ, Marson A, Sabatini DM, Lander ES, ... Walker BD, et al. A genome-wide CRISPR screen identifies a restricted set of HIV host dependency factors. Nature Genetics. PMID 27992415 DOI: 10.1038/Ng.3741  0.098
2018 Chua MD, Walker BD, Jin JP, Guttman JA. Calponins Are Recruited to Actin-rich Structures Generated by Pathogenic E. coli, Listeria and Salmonella. Anatomical Record (Hoboken, N.J. : 2007). PMID 30312538 DOI: 10.1002/Ar.23956  0.097
2019 Mylvaganam G, Yanez AG, Maus M, Walker BD. Toward T Cell-Mediated Control or Elimination of HIV Reservoirs: Lessons From Cancer Immunology. Frontiers in Immunology. 10: 2109. PMID 31552045 DOI: 10.3389/Fimmu.2019.02109  0.092
2016 Jones RB, Mueller S, Kumari S, Vrbanac V, Genel S, Tager AM, Allen TM, Walker BD, Irvine DJ. Antigen recognition-triggered drug delivery mediated by nanocapsule-functionalized cytotoxic T-cells. Biomaterials. 117: 44-53. PMID 27936416 DOI: 10.1016/J.Biomaterials.2016.11.048  0.091
2019 Gaiha GD, Rossin EJ, Urbach J, Landeros C, Collins DR, Nwonu C, Muzhingi I, Anahtar MN, Waring OM, Piechocka-Trocha A, Waring M, Worrall DP, Ghebremichael MS, Newman RM, Power KA, ... Walker BD, et al. Structural topology defines protective CD8 T cell epitopes in the HIV proteome. Science (New York, N.Y.). 364: 480-484. PMID 31048489 DOI: 10.1126/Science.Aav5095  0.091
2018 Martin-Gayo E, Cole MB, Kolb KE, Ouyang Z, Cronin J, Kazer SW, Ordovas-Montanes J, Lichterfeld M, Walker BD, Yosef N, Shalek AK, Yu XG. A Reproducibility-Based Computational Framework Identifies an Inducible, Enhanced Antiviral State in Dendritic Cells from HIV-1 Elite Controllers. Genome Biology. 19: 10. PMID 29378643 DOI: 10.1186/S13059-017-1385-X  0.09
2018 Joglekar AV, Liu Z, Weber JK, Ouyang Y, Jeppson JD, Noh WJ, Lamothe-Molina PA, Chen H, Kang SG, Bethune MT, Zhou R, Walker BD, Baltimore D. T cell receptors for the HIV KK10 epitope from patients with differential immunologic control are functionally indistinguishable. Proceedings of the National Academy of Sciences of the United States of America. PMID 29437954 DOI: 10.1073/Pnas.1718659115  0.089
2016 Barton JP, Goonetilleke N, Butler TC, Walker BD, McMichael AJ, Chakraborty AK. Relative rate and location of intra-host HIV evolution to evade cellular immunity are predictable. Nature Communications. 7: 11660. PMID 27212475 DOI: 10.1038/Ncomms11660  0.088
2020 Ndlovu B, Gounder K, Muema D, Raju N, Hermanus T, Mthethwa Q, Robertson K, Walker BD, Georgiev IS, Morris L, Moore PL, Ndung'u T. Envelope characteristics in individuals who developed neutralizing antibodies targeting different epitopes in HIV-1 subtype C infection. Virology. 546: 1-12. PMID 32275203 DOI: 10.1016/J.Virol.2020.03.003  0.088
2018 Lofano G, Gorman MJ, Yousif AS, Yu WH, Fox JM, Dugast AS, Ackerman ME, Suscovich TJ, Weiner J, Barouch D, Streeck H, Little S, Smith D, Richman D, Lauffenburger D, Walker BD, et al. Antigen-specific antibody Fc glycosylation enhances humoral immunity via the recruitment of complement. Science Immunology. 3. PMID 30120121 DOI: 10.1126/Sciimmunol.Aat7796  0.085
2020 Kazer SW, Walker BD, Shalek AK. Evolution and Diversity of Immune Responses during Acute HIV Infection. Immunity. 53: 908-924. PMID 33207216 DOI: 10.1016/j.immuni.2020.10.015  0.082
2019 Julg B, Dee L, Ananworanich J, Barouch DH, Bar K, Caskey M, Colby DJ, Dawson L, Dong KL, Dubé K, Eron J, Frater J, Gandhi RT, Geleziunas R, Goulder P, ... Walker BD, et al. Recommendations for analytical antiretroviral treatment interruptions in HIV research trials-report of a consensus meeting. The Lancet. Hiv. PMID 30885693 DOI: 10.1016/S2352-3018(19)30052-9  0.08
2016 Scheid JF, Horwitz JA, Bar-On Y, Kreider EF, Lu CL, Lorenzi JC, Feldmann A, Braunschweig M, Nogueira L, Oliveira T, Shimeliovich I, Patel R, Burke L, Cohen YZ, Hadrigan S, ... Walker BD, et al. HIV-1 antibody 3BNC117 suppresses viral rebound in humans during treatment interruption. Nature. PMID 27338952 DOI: 10.1038/Nature18929  0.079
2017 Clayton KL, Garcia JV, Clements JE, Walker BD. HIV Infection of Macrophages: Implications for Pathogenesis and Cure. Pathogens & Immunity. 2: 179-192. PMID 28752134 DOI: 10.20411/pai.v2i2.204  0.077
2014 Buist AR, Dennany L, Kennedy AR, Manzie C, McPhie K, Walker B. Eight salt forms of sulfadiazine. Acta Crystallographica. Section C, Structural Chemistry. 70: 900-7. PMID 25186365 DOI: 10.1107/S2053229614018725  0.077
2018 Ramsuran V, Naranbhai V, Horowitz A, Qi Y, Martin MP, Yuki Y, Gao X, Walker-Sperling V, Del Prete GQ, Schneider DK, Lifson JD, Fellay J, Deeks SG, Martin JN, Goedert JJ, ... Walker BD, et al. Elevated HLA-A expression impairs HIV control through inhibition of NKG2A-expressing cells. Science (New York, N.Y.). 359: 86-90. PMID 29302013 DOI: 10.1126/Science.Aam8825  0.077
2018 Martin MP, Naranbhai V, Shea PR, Qi Y, Ramsuran V, Vince N, Gao X, Thomas R, Brumme ZL, Carlson JM, Wolinsky SM, Goedert JJ, Walker BD, Segal FP, Deeks SG, et al. Killer cell immunoglobulin-like receptor 3DL1 variation modifies HLA-B*57 protection against HIV-1. The Journal of Clinical Investigation. PMID 29461980 DOI: 10.1172/JCI98463  0.077
2017 Leipold MD, Obermoser G, Fenwick C, Kleinstuber K, Rashidi N, McNevin JP, Nau AN, Wagar LE, Rozot V, Davis MM, DeRosa S, Pantaleo G, Scriba TJ, Walker BD, Olsen LR, et al. Comparison of CyTOF assays across sites: Results of a six-center pilot study. Journal of Immunological Methods. PMID 29174717 DOI: 10.1016/J.Jim.2017.11.008  0.075
2016 Tully DC, Ogilvie CB, Batorsky RE, Bean DJ, Power KA, Ghebremichael M, Bedard HE, Gladden AD, Seese AM, Amero MA, Lane K, McGrath G, Bazner SB, Tinsley J, Lennon NJ, ... Walker BD, et al. Differences in the Selection Bottleneck between Modes of Sexual Transmission Influence the Genetic Composition of the HIV-1 Founder Virus. Plos Pathogens. 12: e1005619. PMID 27163788 DOI: 10.1371/Journal.Ppat.1005619  0.075
2020 Joung J, Ladha A, Saito M, Segel M, Bruneau R, Huang MW, Kim NG, Yu X, Li J, Walker BD, Greninger AL, Jerome KR, Gootenberg JS, Abudayyeh OO, Zhang F. Point-of-care testing for COVID-19 using SHERLOCK diagnostics. Medrxiv : the Preprint Server For Health Sciences. PMID 32511521 DOI: 10.1101/2020.05.04.20091231  0.072
2016 Baxter AE, Niessl J, Fromentin R, Richard J, Porichis F, Charlebois R, Massanella M, Brassard N, Alsahafi N, Delgado GG, Routy JP, Walker BD, Finzi A, Chomont N, Kaufmann DE. Single-Cell Characterization of Viral Translation-Competent Reservoirs in HIV-Infected Individuals. Cell Host & Microbe. PMID 27545045 DOI: 10.1016/J.Chom.2016.07.015  0.071
2020 Bucur O, Fu F, Calderon M, Mylvaganam GH, Ly NL, Day J, Watkin S, Walker BD, Boyden ES, Zhao Y. Nanoscale imaging of clinical specimens using conventional and rapid-expansion pathology. Nature Protocols. PMID 32238952 DOI: 10.1038/S41596-020-0300-1  0.07
2020 Painter MM, Zimmerman GE, Merlino MS, Robertson AW, Terry VH, Ren X, McLeod MR, Gomez-Rodriguez L, Garcia KA, Leonard JA, Leopold KE, Neevel AJ, Lubow J, Olson E, Piechocka-Trocha A, ... Walker BD, et al. Concanamycin A counteracts HIV-1 Nef to enhance immune clearance of infected primary cells by cytotoxic T lymphocytes. Proceedings of the National Academy of Sciences of the United States of America. PMID 32900948 DOI: 10.1073/Pnas.2008615117  0.07
2020 Shrock E, Fujimura E, Kula T, Timms RT, Lee IH, Leng Y, Robinson ML, Sie BM, Li MZ, Chen Y, Logue J, Zuiani A, McCulloch D, Lelis FJN, Henson S, ... ... Walker BD, et al. Viral epitope profiling of COVID-19 patients reveals cross-reactivity and correlates of severity. Science (New York, N.Y.). PMID 32994364 DOI: 10.1126/science.abd4250  0.07
2017 Lee GQ, Orlova-Fink N, Einkauf K, Chowdhury FZ, Sun X, Harrington S, Kuo HH, Hua S, Chen HR, Ouyang Z, Reddy K, Dong K, Ndung'u T, Walker BD, Rosenberg ES, et al. Clonal expansion of genome-intact HIV-1 in functionally polarized Th1 CD4+ T cells. The Journal of Clinical Investigation. PMID 28628034 DOI: 10.1172/JCI93289  0.07
2020 Jiang C, Lian X, Gao C, Sun X, Einkauf KB, Chevalier JM, Chen SMY, Hua S, Rhee B, Chang K, Blackmer JE, Osborn M, Peluso MJ, Hoh R, Somsouk M, ... Walker BD, et al. Distinct viral reservoirs in individuals with spontaneous control of HIV-1. Nature. PMID 32848246 DOI: 10.1038/S41586-020-2651-8  0.069
2017 Thomas AS, Jones KL, Gandhi RT, McMahon DK, Cyktor JC, Chan D, Huang SH, Truong R, Bosque A, Macedo AB, Kovacs C, Benko E, Eron JJ, Bosch RJ, Lalama CM, ... Walker BD, et al. mT-cell responses targeting HIV Nef uniquely correlate with infected cell frequencies after long-term antiretroviral therapy. Plos Pathogens. 13: e1006629. PMID 28931091 DOI: 10.1371/Journal.Ppat.1006629  0.069
2016 Muenchhoff M, Adland E, Karimanzira O, Crowther C, Pace M, Csala A, Leitman E, Moonsamy A, McGregor C, Hurst J, Groll A, Mori M, Sinmyee S, Thobakgale C, Tudor-Williams G, ... Walker BD, et al. Nonprogressing HIV-infected children share fundamental immunological features of nonpathogenic SIV infection. Science Translational Medicine. 8: 358ra125. PMID 27683550 DOI: 10.1126/scitranslmed.aag1048  0.068
2018 Hoopes PC, Walker BD, Birdsong OC, Moshirfar M. Small-aperture corneal inlay repositioning. Journal of Cataract and Refractive Surgery. 44: 3-5. PMID 29502615 DOI: 10.1016/j.jcrs.2017.10.043  0.068
2016 Palmer CD, Romero-Tejeda M, Scully EP, Lockhart A, Seaman MS, Goldenthal A, Piechocka-Trocha A, Walker BD, Chibnik LB, Jost S, Porichis F. Increased frequencies of CD8(+)CD57(+) T cells are associated with antibody neutralization breadth against HIV in viraemic controllers. Journal of the International Aids Society. 19: 21136. PMID 27938646 DOI: 10.7448/IAS.19.1.21136  0.067
2018 Baiyegunhi O, Ndlovu B, Ogunshola F, Ismail N, Walker BD, Ndung'u T, Ndhlovu ZM. Frequencies of circulating Th1-biased T follicular helper cells in acute HIV-1 infection correlate with the development of HIV-specific antibody responses and lower set point viral load. Journal of Virology. PMID 29793949 DOI: 10.1128/Jvi.00659-18  0.067
2017 Mabuka JM, Dugast AS, Muema DM, Reddy T, Ramlakhan Y, Euler Z, Ismail N, Moodley A, Dong KL, Morris L, Walker BD, Alter G, Ndung'u T. Plasma CXCL13 but Not B Cell Frequencies in Acute HIV Infection Predicts Emergence of Cross-Neutralizing Antibodies. Frontiers in Immunology. 8: 1104. PMID 28943879 DOI: 10.3389/Fimmu.2017.01104  0.066
2020 Collins DR, Gaiha GD, Walker BD. CD8 T cells in HIV control, cure and prevention. Nature Reviews. Immunology. PMID 32051540 DOI: 10.1038/s41577-020-0274-9  0.066
2016 Newsome SD, Aliotta PJ, Bainbridge J, Bennett SE, Cutter G, Fenton K, Lublin F, Northrop D, Rintell D, Walker BD, Weigel M, Zackowski K, Jones DE. CME/CNE Article: A Framework of Care in Multiple Sclerosis, Part 1: Updated Disease Classification and Disease-Modifying Therapy Use in Specific Circumstances. International Journal of Ms Care. 18: 314-323. PMID 27999526 DOI: 10.7224/1537-2073.2016-051  0.065
2017 Leitman EM, Palmer CD, Buus S, Chen F, Riddell L, Sims S, Klenerman P, Sáez-Cirión A, Walker BD, Hess PR, Altfeld M, Matthews PC, Goulder PJR. Saporin-conjugated tetramers identify efficacious anti-HIV CD8+ T-cell specificities. Plos One. 12: e0184496. PMID 29020090 DOI: 10.1371/journal.pone.0184496  0.065
2016 Lederman MM, Cannon PM, Currier JS, June CH, Kiem HP, Kuritzkes DR, Lewin SR, Margolis DM, McCune JM, Mellors JW, Schacker TW, Sekaly RP, Tebas P, Walker BD, Douek DC. A Cure for HIV Infection: "Not in My Lifetime" or "Just Around the Corner"? Pathogens & Immunity. 1: 154-164. PMID 27668293 DOI: 10.20411/pai.v1i1.133  0.064
2010 Rachakatla RS, Balivada S, Seo GM, Myers CB, Wang H, Samarakoon TN, Dani R, Pyle M, Kroh FO, Walker B, Leaym X, Koper OB, Chikan V, Bossmann SH, Tamura M, et al. Attenuation of mouse melanoma by A/C magnetic field after delivery of bi-magnetic nanoparticles by neural progenitor cells. Acs Nano. 4: 7093-104. PMID 21058696 DOI: 10.1021/Nn100870Z  0.064
2021 Hartana CA, Rassadkina Y, Gao C, Martin-Gayo E, Walker BD, Lichterfeld M, Yu XG. Long noncoding RNA MIR4435-2HG enhances metabolic function of myeloid dendritic cells from HIV-1 elite controllers. The Journal of Clinical Investigation. 131. PMID 33938445 DOI: 10.1172/JCI146136  0.063
2017 Laher F, Ranasinghe S, Porichis F, Mewalal N, Pretorius K, Ismail N, Buus S, Stryhn A, Carrington M, Walker BD, Ndung'u T, Ndhlovu ZM. HIV controllers exhibit enhanced frequencies of MHC class II tetramer+ Gag-specific CD4+ T cells in chronic clade C HIV-1 infection. Journal of Virology. PMID 28077659 DOI: 10.1128/Jvi.02477-16  0.063
2021 Garcia-Bates TM, Palma ML, Anderko RR, Hsu DC, Ananworanich J, Korber BT, Gaiha GD, Phanuphak N, Thomas R, Tovanabutra S, Walker BD, Mellors JW, Piazza PA, Kroon E, Riddler SA, et al. Dendritic cells focus CTL responses toward highly conserved and topologically important HIV-1 epitopes. Ebiomedicine. 63: 103175. PMID 33450518 DOI: 10.1016/j.ebiom.2020.103175  0.063
2016 Jones RB, Mueller S, O'Connor R, Rimpel K, Sloan DD, Karel D, Wong HC, Jeng EK, Thomas AS, Whitney JB, Lim SY, Kovacs C, Benko E, Karandish S, Huang SH, ... Walker BD, et al. A Subset of Latency-Reversing Agents Expose HIV-Infected Resting CD4+ T-Cells to Recognition by Cytotoxic T-Lymphocytes. Plos Pathogens. 12: e1005545. PMID 27082643 DOI: 10.1371/Journal.Ppat.1005545  0.063
2017 Dugast AS, Arnold K, Lofano G, Moore S, Hoffner M, Simek M, Poignard P, Seaman M, Suscovich T, Pereyra F, Walker BD, Lauffenburger D, Kwon D, Keele BF, Alter G. Virus-driven inflammation is associated with the development of bNAbs in spontaneous controllers of HIV. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 28158448 DOI: 10.1093/Cid/Cix057  0.062
2019 Lee GQ, Reddy K, Einkauf KB, Gounder K, Chevalier JM, Dong KL, Walker BD, Yu XG, Ndung'u T, Lichterfeld M. HIV-1 DNA sequence diversity and evolution during acute subtype C infection. Nature Communications. 10: 2737. PMID 31227699 DOI: 10.1038/s41467-019-10659-2  0.062
2016 Gaiha GD, Walker BD. CD8(+) T Cells and cART: A Dynamic Duo? Immunity. 45: 466-8. PMID 27653598 DOI: 10.1016/j.immuni.2016.09.003  0.062
2016 Rucevic M, Kourjian G, Boucau J, Blatnik R, Garcia Bertran W, Berberich MJ, Walker BD, Riemer AB, Le Gall S. MHC-bound HIV Peptides Identified from Various Cell Types Reveal Common Nested Peptides and Novel T Cell Responses. Journal of Virology. PMID 27440904 DOI: 10.1128/JVI.00599-16  0.061
2020 Martin-Gayo E, Gao C, Chen HR, Ouyang Z, Kim D, Kolb KE, Shalek AK, Walker BD, Lichterfeld M, Yu XG. Immunological Fingerprints of Controllers Developing Neutralizing HIV-1 Antibodies. Cell Reports. 30: 984-996.e4. PMID 31995767 DOI: 10.1016/J.Celrep.2019.12.087  0.06
2017 Freund NT, Wang H, Scharf L, Nogueira L, Horwitz JA, Bar-On Y, Golijanin J, Sievers SA, Sok D, Cai H, Cesar Lorenzi JC, Halper-Stromberg A, Toth I, Piechocka-Trocha A, Gristick HB, ... Walker BD, et al. Coexistence of potent HIV-1 broadly neutralizing antibodies and antibody-sensitive viruses in a viremic controller. Science Translational Medicine. 9. PMID 28100831 DOI: 10.1126/Scitranslmed.Aal2144  0.06
2010 Balivada S, Rachakatla RS, Wang H, Samarakoon TN, Dani RK, Pyle M, Kroh FO, Walker B, Leaym X, Koper OB, Tamura M, Chikan V, Bossmann SH, Troyer DL. A/C magnetic hyperthermia of melanoma mediated by iron(0)/iron oxide core/shell magnetic nanoparticles: A mouse study Bmc Cancer. 10. PMID 20350328 DOI: 10.1186/1471-2407-10-119  0.06
2019 Jin SW, Alsahafi N, Kuang XT, Swann SA, Toyoda M, Göttlinger H, Walker BD, Ueno T, Finzi A, Brumme ZL, Brockman MA. Natural HIV-1 Nef Polymorphisms Impair SERINC5 Downregulation Activity. Cell Reports. 29: 1449-1457.e5. PMID 31693887 DOI: 10.1016/J.Celrep.2019.10.007  0.06
2018 Chowdhury FZ, Ouyang Z, Buzon M, Walker BD, Lichterfeld M, Yu XG. Metabolic pathway activation distinguish transcriptional signatures of CD8+ T cells from HIV-1 elite controllers. Aids (London, England). PMID 30289807 DOI: 10.1097/QAD.0000000000002007  0.06
2020 Muema DM, Akilimali NA, Ndumnego OC, Rasehlo SS, Durgiah R, Ojwach DBA, Ismail N, Dong M, Moodley A, Dong KL, Ndhlovu ZM, Mabuka JM, Walker BD, Mann JK, Ndung'u T. Association between the cytokine storm, immune cell dynamics, and viral replicative capacity in hyperacute HIV infection. Bmc Medicine. 18: 81. PMID 32209092 DOI: 10.1186/S12916-020-01529-6  0.059
2017 Flerin NC, Chen H, Glover TD, Lamothe PA, Zheng JH, Fang JW, Ndhlovu ZM, Newell EW, Davis MM, Walker BD, Goldstein H. TCR Clonotype-specific Differences in Inhibitory Activity of HIV-1 Cytotoxic T Cell Clones is Not Mediated by TCR Alone. Journal of Virology. PMID 28077649 DOI: 10.1128/Jvi.02412-16  0.058
2016 Walker B, Powers-Fletcher MV, Schmidt RL, Hanson KE. A Cost-Effectiveness Analysis of Multiplex PCR with Magnetic Resonance Detection versus Empiric or Blood Culture Directed Therapy for the Management of Suspected Candidemia. Journal of Clinical Microbiology. PMID 26739159 DOI: 10.1128/JCM.02971-15  0.058
2016 Apps R, Del Prete GQ, Chatterjee P, Lara A, Brumme ZL, Brockman MA, Neil S, Pickering S, Schneider DK, Piechocka-Trocha A, Walker BD, Thomas R, Shaw GM, Hahn BH, Keele BF, et al. HIV-1 Vpu Mediates HLA-C Downregulation. Cell Host & Microbe. 19: 686-95. PMID 27173934 DOI: 10.1016/J.Chom.2016.04.005  0.058
2019 Ndhlovu ZM, Kazer SW, Nkosi T, Ogunshola F, Muema DM, Anmole G, Swann SA, Moodley A, Dong K, Reddy T, Brockman MA, Shalek AK, Ndung'u T, Walker BD. Augmentation of HIV-specific T cell function by immediate treatment of hyperacute HIV-1 infection. Science Translational Medicine. 11. PMID 31118290 DOI: 10.1126/Scitranslmed.Aau0528  0.058
2016 Ranasinghe S, Lamothe PA, Soghoian DZ, Kazer SW, Cole MB, Shalek AK, Yosef N, Jones RB, Donaghey F, Nwonu C, Jani P, Clayton GM, Crawford F, White J, Montoya A, ... Walker BD, et al. Antiviral CD8(+) T Cells Restricted by Human Leukocyte Antigen Class II Exist during Natural HIV Infection and Exhibit Clonal Expansion. Immunity. 45: 917-930. PMID 27760342 DOI: 10.1016/J.Immuni.2016.09.015  0.057
2020 Kaneko N, Kuo HH, Boucau J, Farmer JR, Allard-Chamard H, Mahajan VS, Piechocka-Trocha A, Lefteri K, Osborn M, Bals J, Bartsch YC, Bonheur N, Caradonna TM, Chevalier J, Chowdhury F, ... Walker BD, et al. The Loss of Bcl-6 Expressing T Follicular Helper Cells and the Absence of Germinal Centers in COVID-19. Ssrn. 3652322. PMID 32742244 DOI: 10.2139/ssrn.3652322  0.057
2017 Martin-Gayo E, Cronin J, Hickman T, Ouyang Z, Lindqvist M, Kolb KE, Schulze Zur Wiesch J, Cubas R, Porichis F, Shalek AK, van Lunzen J, Haddad EK, Walker BD, Kaufmann DE, Lichterfeld M, et al. Circulating CXCR5(+)CXCR3(+)PD-1(lo) Tfh-like cells in HIV-1 controllers with neutralizing antibody breadth. Jci Insight. 2: e89574. PMID 28138558 DOI: 10.1172/Jci.Insight.89574  0.056
2018 Chung A, Makuba JM, Ndlovu B, Licht A, Robinson H, Ramlakhan Y, Ghebremichael M, Reddy T, Goulder P, Walker B, Ndung'u T, Alter G. Viral control in chronic HIV-1 subtype C infection is associated with enrichment of p24 IgG1 with Fc effector activity. Aids (London, England). PMID 29620716 DOI: 10.1097/Qad.0000000000001812  0.056
2017 Leitman EM, Willberg CB, Tsai MH, Chen H, Buus S, Chen F, Riddell L, Haas D, Fellay J, Goedert JJ, Piechocka-Trocha A, Walker BD, Martin J, Deeks S, Wolinsky SM, et al. HLA-B*14:02-RESTRICTED ENV-SPECIFIC CD8+ T-CELL ACTIVITY HAS HIGHLY POTENT ANTIVIRAL EFFICACY ASSOCIATED WITH IMMUNE CONTROL OF HIV INFECTION. Journal of Virology. PMID 28878089 DOI: 10.1128/Jvi.00544-17  0.056
2016 Sips M, Liu Q, Draghi M, Ghebremichael M, Berger CT, Suscovich TJ, Sun Y, Walker BD, Carrington M, Altfeld M, Brouckaert P, De Jager PL, Alter G. HLA-C levels impact natural killer cell subset distribution and function. Human Immunology. PMID 27521484 DOI: 10.1016/J.Humimm.2016.08.004  0.056
2021 Clayton KL, Mylvaganam G, Villasmil-Ocando A, Stuart H, Maus MV, Rashidian M, Ploegh HL, Walker BD. HIV-infected macrophages resist efficient NK cell-mediated killing while preserving inflammatory cytokine responses. Cell Host & Microbe. PMID 33571449 DOI: 10.1016/j.chom.2021.01.006  0.055
2019 Monel B, McKeon A, Lamothe-Molina P, Jani P, Boucau J, Pacheco Y, Jones RB, Le Gall S, Walker BD. HIV Controllers Exhibit Effective CD8 T Cell Recognition of HIV-1-Infected Non-activated CD4 T Cells. Cell Reports. 27: 142-153.e4. PMID 30943397 DOI: 10.1016/j.celrep.2019.03.016  0.054
2019 Gonzalo-Gil E, Rapuano PB, Ikediobi U, Leibowitz R, Mehta S, Coskun AK, Porterfield JZ, Lampkin TD, Marconi VC, Rimland D, Walker BD, Deeks S, Sutton RE. Transcriptional down-regulation of in a subset of HIV+ controllers and their family members. Elife. 8. PMID 30964004 DOI: 10.7554/eLife.44360  0.053
2016 Mahan AE, Jennewein MF, Suscovich T, Dionne K, Tedesco J, Chung AW, Streeck H, Pau M, Schuitemaker H, Francis D, Fast P, Laufer D, Walker BD, Baden L, Barouch DH, et al. Antigen-Specific Antibody Glycosylation Is Regulated via Vaccination. Plos Pathogens. 12: e1005456. PMID 26982805 DOI: 10.1371/Journal.Ppat.1005456  0.053
2018 Namazi G, Fajnzylber JM, Aga E, Bosch R, Acosta EP, Sharaf R, Hartogensis W, Jacobson JM, Connick E, Volberding P, Skiest D, Margolis D, Sneller MC, Little SJ, Gianella S, ... Walker BD, et al. The Control of HIV after Antiretroviral Medication Pause (CHAMP) study: post-treatment controllers identified from 14 clinical studies. The Journal of Infectious Diseases. PMID 30085241 DOI: 10.1093/Infdis/Jiy479  0.053
2020 Joung J, Ladha A, Saito M, Kim NG, Woolley AE, Segel M, Barretto RPJ, Ranu A, Macrae RK, Faure G, Ioannidi EI, Krajeski RN, Bruneau R, Huang MW, Yu XG, ... ... Walker BD, et al. Detection of SARS-CoV-2 with SHERLOCK One-Pot Testing. The New England Journal of Medicine. PMID 32937062 DOI: 10.1056/Nejmc2026172  0.052
2017 Gosmann C, Anahtar MN, Handley SA, Farcasanu M, Abu-Ali G, Bowman BA, Padavattan N, Desai C, Droit L, Moodley A, Dong M, Chen Y, Ismail N, Ndung'u T, Ghebremichael MS, ... Walker BD, et al. Lactobacillus-Deficient Cervicovaginal Bacterial Communities Are Associated with Increased HIV Acquisition in Young South African Women. Immunity. PMID 28087240 DOI: 10.1016/J.Immuni.2016.12.013  0.052
2020 Millar JR, Bengu N, Fillis R, Sprenger K, Ntlantsana V, Vieira VA, Khambati N, Archary M, Muenchhoff M, Groll A, Grayson N, Adamson J, Govender K, Dong K, Kiepiela P, Walker BD, et al. HIGH-FREQUENCY failure of combination antiretroviral therapy in paediatric HIV infection is associated with unmet maternal needs causing maternal NON-ADHERENCE. Eclinicalmedicine. 22: 100344. PMID 32510047 DOI: 10.1016/j.eclinm.2020.100344  0.052
2018 Huang SH, Ren Y, Thomas AS, Chan D, Mueller S, Ward AR, Patel S, Bollard CM, Cruz CR, Karandish S, Truong R, Macedo AB, Bosque A, Kovacs C, Benko E, ... Walker BD, et al. Latent HIV reservoirs exhibit inherent resistance to elimination by CD8+ T cells. The Journal of Clinical Investigation. PMID 29355843 DOI: 10.1172/Jci97555  0.051
2017 Li X, Lamothe PA, Walker BD, Wang JH. Crystal structure of HLA-B*5801 with a TW10 HIV Gag epitope reveals a novel mode of peptide presentation. Cellular & Molecular Immunology. PMID 28552904 DOI: 10.1038/Cmi.2017.24  0.051
2017 Leitman EM, Thobakgale CF, Adland E, Ansari MA, Raghwani J, Prendergast AJ, Tudor-Williams G, Kiepiela P, Hemelaar J, Brener J, Tsai MH, Mori M, Riddell L, Luzzi G, Jooste P, ... Walker BD, et al. Role of HIV-specific CD8(+) T cells in pediatric HIV cure strategies after widespread early viral escape. The Journal of Experimental Medicine. PMID 28983013 DOI: 10.1084/Jem.20162123  0.049
2020 Kaneko N, Kuo HH, Boucau J, Farmer JR, Allard-Chamard H, Mahajan VS, Piechocka-Trocha A, Lefteri K, Osborn M, Bals J, Bartsch YC, Bonheur N, Caradonna TM, Chevalier J, Chowdhury F, ... Walker BD, et al. Loss of Bcl-6-Expressing T Follicular Helper Cells and Germinal Centers in COVID-19. Cell. PMID 32877699 DOI: 10.1016/J.Cell.2020.08.025  0.049
2018 Clayton KL, Collins DR, Lengieza J, Ghebremichael M, Dotiwala F, Lieberman J, Walker BD. Resistance of HIV-infected macrophages to CD8 T lymphocyte-mediated killing drives activation of the immune system. Nature Immunology. 19: 475-486. PMID 29670239 DOI: 10.1038/S41590-018-0085-3  0.048
2016 Shasha D, Karel D, Angiuli O, Greenblatt A, Ghebremichael M, Yu X, Porichis F, Walker BD. Elite controller CD8+ T cells exhibit comparable viral inhibition capacity, but better sustained effector properties compared to chronic progressors. Journal of Leukocyte Biology. PMID 27406996 DOI: 10.1189/jlb.4A0915-422R  0.048
2020 Galván-Peña S, Leon J, Chowdhary K, Michelson DA, Vijaykumar B, Yang L, Magnuson A, Manickas-Hill Z, Piechocka-Trocha A, Worrall DP, Hall KE, Ghebremichael M, Walker BD, Li J, Yu XG, et al. Profound Treg perturbations correlate with COVID-19 severity. Biorxiv : the Preprint Server For Biology. PMID 33330871 DOI: 10.1101/2020.12.11.416180  0.048
2016 Dominguez-Molina B, Tarancon-Diez L, Hua S, Abad-Molina C, Rodriguez-Gallego E, Machmach K, Vidal F, Tural C, Moreno S, Goñi JM, Ramírez de Arellano E, Del Val M, Gonzalez-Escribano MF, Del Romero J, Rodriguez C, ... ... Walker BD, et al. HLA-B*57 and IFNL4-related polymorphisms are associated with protection against HIV-1 disease progression in controllers. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 27986689 DOI: 10.1093/cid/ciw833  0.048
2017 Newsome SD, Aliotta PJ, Bainbridge J, Bennett SE, Cutter G, Fenton K, Lublin F, Northrop D, Rintell D, Walker BD, Weigel M, Zackowski K, Jones DE. A Framework of Care in Multiple Sclerosis, Part 2: Symptomatic Care and Beyond. International Journal of Ms Care. 19: 42-56. PMID 28243186 DOI: 10.7224/1537-2073.2016-062  0.048
2016 Koofhethile CK, Ndhlovu ZM, Thobakgale-Tshabalala C, Prado JG, Ismail N, Mncube Z, Mkhize L, van der Stok M, Yende N, Walker BD, Goulder PJ, Ndung'u T. CD8+ T cell breadth and ex vivo virus inhibition capacity distinguish between viremic controllers with and without protective HLA class I alleles. Journal of Virology. PMID 27194762 DOI: 10.1128/Jvi.00276-16  0.048
2020 Walker BD, Beaupré SR, Griffin S, Walker J, Druffel E, Xu X. A sealed-tube method for offline δ C analysis of CO via a Gas Bench II continuous flow isotope ratio mass spectrometer. Rapid Communications in Mass Spectrometry : Rcm. PMID 33373477 DOI: 10.1002/rcm.9040  0.045
2013 Walker B, Ashwood ER, Jackson BR, Lagrave D. A tradeoff analysis of risk cutoffs for the quadruple serum screen for Down syndrome. Prenatal Diagnosis. 33: 1201-6. PMID 24027169 DOI: 10.1002/pd.4225  0.045
2018 Ndung'u T, Dong KL, Kwon DS, Walker BD. A FRESH approach: Combining basic science and social good. Science Immunology. 3. PMID 30217812 DOI: 10.1126/sciimmunol.aau2798  0.044
2016 Caskey M, Klein F, Lorenzi JC, Seaman MS, West AP, Buckley N, Kremer G, Nogueira L, Braunschweig M, Scheid JF, Horwitz JA, Shimeliovich I, Ben-Avraham S, Witmer-Pack M, Platten M, ... Walker BD, et al. Corrigendum: Viraemia suppressed in HIV-1-infected humans by broadly neutralizing antibody 3BNC117. Nature. PMID 27007847 DOI: 10.1038/Nature17642  0.043
2017 Dong KL, Moodley A, Kwon DS, Ghebremichael MS, Dong M, Ismail N, Ndhlovu ZM, Mabuka JM, Muema DM, Pretorius K, Lin N, Walker BD, Ndung'u T. Detection and treatment of Fiebig stage I HIV-1 infection in young at-risk women in South Africa: a prospective cohort study. The Lancet. Hiv. PMID 28978417 DOI: 10.1016/S2352-3018(17)30146-7  0.043
2016 Li X, Lamothe PA, Ng R, Xu S, Teng M, Walker BD, Wang JH. Crystal structure of HLA-B*5801, a protective HLA allele for HIV-1 infection. Protein & Cell. PMID 27638468 DOI: 10.1007/S13238-016-0309-Y  0.043
2016 Mahan AE, Jennewein MF, Suscovich T, Dionne K, Tedesco J, Chung AW, Streeck H, Pau M, Schuitemaker H, Francis D, Fast P, Laufer D, Walker BD, Baden L, Barouch DH, et al. Correction: Antigen-Specific Antibody Glycosylation Is Regulated via Vaccination. Plos Pathogens. 12: e1005694. PMID 27253391 DOI: 10.1371/Journal.Ppat.1005694  0.043
2020 Edlow AG, Li JZ, Collier AY, Atyeo C, James KE, Boatin AA, Gray KJ, Bordt EA, Shook LL, Yonker LM, Fasano A, Diouf K, Croul N, Devane S, Yockey LJ, ... ... Walker BD, et al. Assessment of Maternal and Neonatal SARS-CoV-2 Viral Load, Transplacental Antibody Transfer, and Placental Pathology in Pregnancies During the COVID-19 Pandemic. Jama Network Open. 3: e2030455. PMID 33351086 DOI: 10.1001/jamanetworkopen.2020.30455  0.043
2016 Robinson E, Kaushal S, Alaboson J, Sharma S, Belagodu A, Watkins C, Walker B, Webster G, McCarthy P, Ho D. Combinatorial release of dexamethasone and amiodarone from a nano-structured parylene-C film to reduce perioperative inflammation and atrial fibrillation. Nanoscale. PMID 26838117 DOI: 10.1039/C5Nr07456H  0.042
2017 McLaren PJ, Pulit SL, Gurdasani D, Bartha I, Shea PR, Pomilla C, Gupta N, Gkrania-Klotsas E, Young EH, Bannert N, Amo JD, Gill J, Gilmour J, Kellam P, Kelleher AD, ... ... Walker BD, et al. Evaluating the impact of functional genetic variation on HIV-1 control. The Journal of Infectious Diseases. PMID 28968755 DOI: 10.1093/Infdis/Jix470  0.037
2020 Fajnzylber J, Regan J, Coxen K, Corry H, Wong C, Rosenthal A, Worrall D, Giguel F, Piechocka-Trocha A, Atyeo C, Fischinger S, Chan A, Flaherty KT, Hall K, Dougan M, ... ... Walker BD, et al. SARS-CoV-2 viral load is associated with increased disease severity and mortality. Nature Communications. 11: 5493. PMID 33127906 DOI: 10.1038/s41467-020-19057-5  0.035
2021 Biltaji E, Walker B, Au TH, Rivers Z, Ose J, Li CI, Brixner DI, Stenehjem DD, Ulrich CM. Can Cost-effectiveness Analysis Inform Genotype-Guided Aspirin Use for Primary Colorectal Cancer Prevention? Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. PMID 33849967 DOI: 10.1158/1055-9965.EPI-19-1580  0.033
2021 Kaneko N, Boucau J, Kuo HH, Perugino C, Mahajan VS, Farmer JR, Liu H, Diefenbach TJ, Piechocka-Trocha A, Lefteri K, Waring MT, Premo KR, Walker BD, Li JZ, Gaiha G, et al. Expansion of Cytotoxic CD4+ T cells in the lungs in severe COVID-19. Medrxiv : the Preprint Server For Health Sciences. PMID 33791730 DOI: 10.1101/2021.03.23.21253885  0.029
2017 Moshirfar M, Walker BD, Birdsong OC. Cataract surgery in eyes with keratoconus: a review of the current literature. Current Opinion in Ophthalmology. PMID 28961565 DOI: 10.1097/ICU.0000000000000440  0.028
2021 Silverstein NJ, Wang Y, Manickas-Hill Z, Carbone CC, Dauphin A, Li JZ, Walker BD, Yu XG, Luban J. Innate lymphoid cells and disease tolerance in SARS-CoV-2 infection. Medrxiv : the Preprint Server For Health Sciences. PMID 33469605 DOI: 10.1101/2021.01.14.21249839  0.024
2017 Mercer RG, Walker BD, Yang X, McMullen LM, Gänzle MG. The locus of heat resistance (LHR) mediates heat resistance in Salmonella enterica, Escherichia coli and Enterobacter cloacae. Food Microbiology. 64: 96-103. PMID 28213040 DOI: 10.1016/j.fm.2016.12.018  0.021
2021 Walker BD. The AMP Trials - A Glass Half Full. The New England Journal of Medicine. 384: 1068-1069. PMID 33730459 DOI: 10.1056/NEJMe2101131  0.014
2018 Moshirfar M, Walker BD, Linn SH, Birdsong OC, Hoopes PC. Optimal Pocket Depth for Corneal Inlays. Journal of Refractive Surgery (Thorofare, N.J. : 1995). 34: 288. PMID 29634846 DOI: 10.3928/1081597X-20180209-01  0.013
2018 Moshirfar M, Desautels JD, Walker BD, Birdsong OC, Skanchy DF, Quist TS, Murri MS, Linn SH, Hoopes PC, Hoopes PC. Long-term changes in keratometry and refraction after small aperture corneal inlay implantation. Clinical Ophthalmology (Auckland, N.Z.). 12: 1931-1938. PMID 30323549 DOI: 10.2147/OPTH.S164964  0.011
2020 Choi B, Choudhary MC, Regan J, Sparks JA, Padera RF, Qiu X, Solomon IH, Kuo HH, Boucau J, Bowman K, Adhikari UD, Winkler ML, Mueller AA, Hsu TY, Desjardins M, ... ... Walker BD, et al. Persistence and Evolution of SARS-CoV-2 in an Immunocompromised Host. The New England Journal of Medicine. PMID 33176080 DOI: 10.1056/NEJMc2031364  0.01
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