Richard L. Gourse - Publications

Affiliations: 
University of Wisconsin, Madison, Madison, WI 
Area:
Microbiology Biology
Website:
https://bact.wisc.edu/people_profile.php?t=rf&p=rlgourse

143 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Chen J, Chiu C, Gopalkrishnan S, Chen AY, Olinares PDB, Saecker RM, Winkelman JT, Maloney MF, Chait BT, Ross W, Gourse RL, Campbell EA, Darst SA. Stepwise Promoter Melting by Bacterial RNA Polymerase. Molecular Cell. PMID 32160514 DOI: 10.1016/j.molcel.2020.02.017  0.72
2019 Chen J, Gopalkrishnan S, Chiu C, Chen AY, Campbell EA, Gourse RL, Ross W, Darst SA. TraR allosterically regulates transcription initiation by altering RNA polymerase conformation. Elife. 8. PMID 31841111 DOI: 10.7554/eLife.49375  0.72
2019 Cartagena AJ, Banta AB, Sathyan N, Ross W, Gourse RL, Campbell EA, Darst SA. Structural basis for transcription activation by Crl through tethering of σ and RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America. PMID 31484766 DOI: 10.1073/pnas.1910827116  0.72
2019 Sanchez-Vazquez P, Dewey CN, Kitten N, Ross W, Gourse RL. Genome-wide effects on transcription from ppGpp binding to its two sites on RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America. PMID 30971496 DOI: 10.1073/pnas.1819682116  0.72
2018 Gourse RL, Chen AY, Gopalkrishnan S, Sanchez-Vazquez P, Myers A, Ross W. Transcriptional Responses to ppGpp and DksA. Annual Review of Microbiology. 72: 163-184. PMID 30200857 DOI: 10.1146/annurev-micro-090817-062444  0.72
2018 Gourse RL, Bouveret E. Linking glucose metabolism to the stringent response through the PTS. Proceedings of the National Academy of Sciences of the United States of America. PMID 29970419 DOI: 10.1073/pnas.1809265115  0.52
2017 Cuthbert BJ, Ross W, Rohlfing AE, Dove SL, Gourse RL, Brennan RG, Schumacher MA. Dissection of the molecular circuitry controlling virulence in Francisella tularensis. Genes & Development. PMID 28864445 DOI: 10.1101/gad.303701.117  0.72
2017 Burgos HL, O'Connor K, Sanchez-Vazquez P, Gourse RL. Roles of Transcriptional and Translational Control Mechanisms in Regulation of Ribosomal Protein Synthesis in Escherichia coli. Journal of Bacteriology. PMID 28784818 DOI: 10.1128/JB.00407-17  0.36
2017 Gopalkrishnan S, Ross W, Chen AY, Gourse RL. TraR directly regulates transcription initiation by mimicking the combined effects of the global regulators DksA and ppGpp. Proceedings of the National Academy of Sciences of the United States of America. PMID 28652326 DOI: 10.1073/pnas.1704105114  0.72
2017 Winkelman JT, Gourse RL. Open complex DNA scrunching: A key to transcription start site selection and promoter escape. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 28052345 DOI: 10.1002/bies.201600193  0.4
2016 Gaal T, Bratton BP, Sanchez-Vazquez P, Sliwicki A, Sliwicki K, Vegel A, Pannu R, Gourse RL. Colocalization of distant chromosomal loci in space in E. coli: a bacterial nucleolus. Genes & Development. 30: 2272-2285. PMID 27898392 DOI: 10.1101/gad.290312.116  0.72
2016 Ross W, Sanchez-Vazquez P, Chen AY, Lee JH, Burgos HL, Gourse RL. ppGpp Binding to a Site at the RNAP-DksA Interface Accounts for Its Dramatic Effects on Transcription Initiation during the Stringent Response. Molecular Cell. PMID 27237053 DOI: 10.1016/j.molcel.2016.04.029  0.72
2016 Maouche R, Burgos HL, My L, Viala JP, Gourse RL, Bouveret E. Co-expression of Escherichia coli obgE encoding the evolutionarily conserved Obg GTPase with ribosomal proteins L21 and L27. Journal of Bacteriology. PMID 27137500 DOI: 10.1128/JB.00159-16  0.52
2016 Winkelman JT, Chandrangsu P, Ross W, Gourse RL. Open complex scrunching before nucleotide addition accounts for the unusual transcription start site of E. coli ribosomal RNA promoters. Proceedings of the National Academy of Sciences of the United States of America. PMID 26976590 DOI: 10.1073/pnas.1522159113  1
2016 Winkelman JT, Vvedenskaya IO, Zhang Y, Zhang Y, Bird JG, Taylor DM, Gourse RL, Ebright RH, Nickels BE. Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection. Science (New York, N.Y.). 351: 1090-3. PMID 26941320 DOI: 10.1126/science.aad6881  0.44
2016 Lima BP, Lennon CW, Ross W, Gourse RL, Wolfe AJ. In vitro evidence that RNAP acetylation and acetyl phosphate-dependent CpxR phosphorylation Affect cpxP transcription regulation. Fems Microbiology Letters. PMID 26790713 DOI: 10.1093/femsle/fnw011  0.44
2015 Yang Y, Darbari VC, Zhang N, Lu D, Glyde R, Wang YP, Winkelman JT, Gourse RL, Murakami KS, Buck M, Zhang X. TRANSCRIPTION. Structures of the RNA polymerase-σ54 reveal new and conserved regulatory strategies. Science (New York, N.Y.). 349: 882-5. PMID 26293966 DOI: 10.1126/science.aab1478  0.4
2015 Winkelman JT, Winkelman BT, Boyce J, Maloney MF, Chen AY, Ross W, Gourse RL. Crosslink Mapping at Amino Acid-Base Resolution Reveals the Path of Scrunched DNA in Initial Transcribing Complexes. Molecular Cell. 59: 768-80. PMID 26257284 DOI: 10.1016/j.molcel.2015.06.037  1
2015 Kimble J, Bement WM, Chang Q, Cox BL, Drinkwater NR, Gourse RL, Hoskins AA, Huttenlocher A, Kreeger PK, Lambert PF, Mailick MR, Miyamoto S, Moss RL, O'Connor-Giles KM, Roopra A, et al. Strategies from UW-Madison for rescuing biomedical research in the US. Elife. 4. PMID 26122792 DOI: 10.7554/eLife.09305  1
2015 Grace ED, Gopalkrishnan S, Girard ME, Blankschien MD, Ross W, Gourse RL, Herman C. Activation of the σE-dependent stress pathway by conjugative TraR may anticipate conjugational stress. Journal of Bacteriology. 197: 924-31. PMID 25535270 DOI: 10.1128/JB.02279-14  1
2015 Yang Y, Darbari VC, Zhang N, Lu D, Glyde R, Wang YP, Winkelman JT, Gourse RL, Murakami KS, Buck M, Zhang X. Structures of the RNA polymerase-σ54 reveal new and conserved regulatory strategies Science. 349: 882-885. DOI: 10.1126/science.aab1478  0.44
2014 Banta AB, Cuff ME, Lin H, Myers AR, Ross W, Joachimiak A, Gourse RL. Structure of the RNA polymerase assembly factor Crl and identification of its interaction surface with sigma S. Journal of Bacteriology. 196: 3279-88. PMID 25002538 DOI: 10.1128/JB.01910-14  1
2014 Lennon CW, Lemmer KC, Irons JL, Sellman MI, Donohue TJ, Gourse RL, Ross W. A Rhodobacter sphaeroides protein mechanistically similar to Escherichia coli DksA regulates photosynthetic growth. Mbio. 5: e01105-14. PMID 24781745 DOI: 10.1128/mBio.01105-14  1
2013 Banta AB, Chumanov RS, Yuan AH, Lin H, Campbell EA, Burgess RR, Gourse RL. Key features of σS required for specific recognition by Crl, a transcription factor promoting assembly of RNA polymerase holoenzyme. Proceedings of the National Academy of Sciences of the United States of America. 110: 15955-60. PMID 24043782 DOI: 10.1073/pnas.1311642110  1
2013 My L, Rekoske B, Lemke JJ, Viala JP, Gourse RL, Bouveret E. Transcription of the Escherichia coli fatty acid synthesis operon fabHDG is directly activated by FadR and inhibited by ppGpp. Journal of Bacteriology. 195: 3784-95. PMID 23772072 DOI: 10.1128/JB.00384-13  1
2013 Winkelman JT, Bree AC, Bate AR, Eichenberger P, Gourse RL, Kearns DB. RemA is a DNA-binding protein that activates biofilm matrix gene expression in Bacillus subtilis. Molecular Microbiology. 88: 984-97. PMID 23646920 DOI: 10.1111/mmi.12235  1
2013 Ross W, Vrentas CE, Sanchez-Vazquez P, Gaal T, Gourse RL. The magic spot: a ppGpp binding site on E. coli RNA polymerase responsible for regulation of transcription initiation. Molecular Cell. 50: 420-9. PMID 23623682 DOI: 10.1016/j.molcel.2013.03.021  1
2012 Lennon CW, Ross W, Martin-Tumasz S, Toulokhonov I, Vrentas CE, Rutherford ST, Lee JH, Butcher SE, Gourse RL. Direct interactions between the coiled-coil tip of DksA and the trigger loop of RNA polymerase mediate transcriptional regulation. Genes & Development. 26: 2634-46. PMID 23207918 DOI: 10.1101/gad.204693.112  1
2012 Gourse RL, Landick R. CoSMoS unravels mysteries of transcription initiation. Cell. 148: 635-7. PMID 22341438 DOI: 10.1016/j.cell.2012.01.042  1
2012 Chandrangsu P, Wang L, Choi SH, Gourse RL. Suppression of a dnaKJ deletion by multicopy dksA results from non-feedback-regulated transcripts that originate upstream of the major dksA promoter. Journal of Bacteriology. 194: 1437-46. PMID 22267514 DOI: 10.1128/JB.06726-11  1
2012 Lee JH, Lennon CW, Ross W, Gourse RL. Role of the coiled-coil tip of Escherichia coli DksA in promoter control. Journal of Molecular Biology. 416: 503-17. PMID 22200485 DOI: 10.1016/j.jmb.2011.12.028  1
2011 Chandrangsu P, Lemke JJ, Gourse RL. The dksA promoter is negatively feedback regulated by DksA and ppGpp. Molecular Microbiology. 80: 1337-48. PMID 21496125 DOI: 10.1111/j.1365-2958.2011.07649.x  1
2011 Lemke JJ, Sanchez-Vazquez P, Burgos HL, Hedberg G, Ross W, Gourse RL. Direct regulation of Escherichia coli ribosomal protein promoters by the transcription factors ppGpp and DksA. Proceedings of the National Academy of Sciences of the United States of America. 108: 5712-7. PMID 21402902 DOI: 10.1073/pnas.1019383108  1
2010 Vrentas CE, Gaal T, Burgess RR, Gourse RL. An improved procedure for the purification of the Escherichia coli RNA polymerase omega subunit. Protein Expression and Purification. 71: 190-4. PMID 19963062 DOI: 10.1016/j.pep.2009.11.009  1
2009 Lemke JJ, Durfee T, Gourse RL. DksA and ppGpp directly regulate transcription of the Escherichia coli flagellar cascade. Molecular Microbiology. 74: 1368-79. PMID 19889089 DOI: 10.1111/j.1365-2958.2009.06939.x  1
2009 Lennon CW, Gaal T, Ross W, Gourse RL. Escherichia coli DksA binds to Free RNA polymerase with higher affinity than to RNA polymerase in an open complex. Journal of Bacteriology. 191: 5854-8. PMID 19617357 DOI: 10.1128/JB.00621-09  1
2009 Blankschien MD, Lee JH, Grace ED, Lennon CW, Halliday JA, Ross W, Gourse RL, Herman C. Super DksAs: substitutions in DksA enhancing its effects on transcription initiation. The Embo Journal. 28: 1720-31. PMID 19424178 DOI: 10.1038/emboj.2009.126  1
2009 Rutherford ST, Villers CL, Lee JH, Ross W, Gourse RL. Allosteric control of Escherichia coli rRNA promoter complexes by DksA. Genes & Development. 23: 236-48. PMID 19171784 DOI: 10.1101/gad.1745409  1
2009 Ross W, Gourse RL. Analysis of RNA polymerase-promoter complex formation. Methods (San Diego, Calif.). 47: 13-24. PMID 18952176 DOI: 10.1016/j.ymeth.2008.10.018  1
2008 Lamour V, Rutherford ST, Kuznedelov K, Ramagopal UA, Gourse RL, Severinov K, Darst SA. Crystal structure of Escherichia coli Rnk, a new RNA polymerase-interacting protein. Journal of Molecular Biology. 383: 367-79. PMID 18760284 DOI: 10.1016/j.jmb.2008.08.011  1
2008 Haugen SP, Ross W, Gourse RL. Advances in bacterial promoter recognition and its control by factors that do not bind DNA. Nature Reviews. Microbiology. 6: 507-19. PMID 18521075 DOI: 10.1038/nrmicro1912  1
2008 Haugen SP, Ross W, Manrique M, Gourse RL. Fine structure of the promoter-sigma region 1.2 interaction. Proceedings of the National Academy of Sciences of the United States of America. 105: 3292-7. PMID 18287032 DOI: 10.1073/pnas.0709513105  1
2008 Vrentas CE, Gaal T, Berkmen MB, Rutherford ST, Haugen SP, Vassylyev DG, Ross W, Gourse RL. Still looking for the magic spot: the crystallographically defined binding site for ppGpp on RNA polymerase is unlikely to be responsible for rRNA transcription regulation. Journal of Molecular Biology. 377: 551-64. PMID 18272182 DOI: 10.1016/j.jmb.2008.01.042  1
2008 Costanzo A, Nicoloff H, Barchinger SE, Banta AB, Gourse RL, Ades SE. ppGpp and DksA likely regulate the activity of the extracytoplasmic stress factor sigmaE in Escherichia coli by both direct and indirect mechanisms. Molecular Microbiology. 67: 619-32. PMID 18086212 DOI: 10.1111/j.1365-2958.2007.06072.x  1
2008 Vrentas CE, Gaal T, Berkmen MB, Rutherford ST, Haugen SP, Ross W, Gourse RL. Corrigendum to "Still Looking for the Magic Spot: The Crystallographically Defined Binding Site for ppGpp on RNA Polymerase Is Unlikely toBe Responsible for rRNA Transcription Regulation" [J. Mol. Biol. 377 (2008) 551-564] (DOI:10.1016/j.jmb.2008.01.042) Journal of Molecular Biology. 379: 1130. DOI: 10.1016/j.jmb.2008.04.059  1
2007 Gourse RL, Keck JL. Magic spots cast a spell on DNA primase. Cell. 128: 823-4. PMID 17350566 DOI: 10.1016/j.cell.2007.02.020  1
2007 Suthers PF, Gourse RL, Yin J. Rapid responses of ribosomal RNA synthesis to nutrient shifts. Biotechnology and Bioengineering. 97: 1230-45. PMID 17216653 DOI: 10.1002/bit.21318  1
2007 Rutherford ST, Lemke JJ, Vrentas CE, Gaal T, Ross W, Gourse RL. Effects of DksA, GreA, and GreB on transcription initiation: insights into the mechanisms of factors that bind in the secondary channel of RNA polymerase. Journal of Molecular Biology. 366: 1243-57. PMID 17207814 DOI: 10.1016/j.jmb.2006.12.013  1
2006 Quinones M, Kimsey HH, Ross W, Gourse RL, Waldor MK. LexA represses CTXphi transcription by blocking access of the alpha C-terminal domain of RNA polymerase to promoter DNA. The Journal of Biological Chemistry. 281: 39407-12. PMID 17046810 DOI: 10.1074/jbc.M609694200  1
2006 Gaal T, Mandel MJ, Silhavy TJ, Gourse RL. Crl facilitates RNA polymerase holoenzyme formation. Journal of Bacteriology. 188: 7966-70. PMID 16980472 DOI: 10.1128/JB.01266-06  1
2006 Mallik P, Paul BJ, Rutherford ST, Gourse RL, Osuna R. DksA is required for growth phase-dependent regulation, growth rate-dependent control, and stringent control of fis expression in Escherichia coli. Journal of Bacteriology. 188: 5775-82. PMID 16885445 DOI: 10.1128/JB.00276-06  1
2006 Gourse RL, Ross W, Rutherford ST. General pathway for turning on promoters transcribed by RNA polymerases containing alternative sigma factors. Journal of Bacteriology. 188: 4589-91. PMID 16788165 DOI: 10.1128/JB.00499-06  1
2006 Haugen SP, Berkmen MB, Ross W, Gaal T, Ward C, Gourse RL. rRNA promoter regulation by nonoptimal binding of sigma region 1.2: an additional recognition element for RNA polymerase. Cell. 125: 1069-82. PMID 16777598 DOI: 10.1016/j.cell.2006.04.034  1
2005 Vrentas CE, Gaal T, Ross W, Ebright RH, Gourse RL. Response of RNA polymerase to ppGpp: requirement for the omega subunit and relief of this requirement by DksA. Genes & Development. 19: 2378-87. PMID 16204187 DOI: 10.1101/gad.1340305  1
2005 Paul BJ, Berkmen MB, Gourse RL. DksA potentiates direct activation of amino acid promoters by ppGpp. Proceedings of the National Academy of Sciences of the United States of America. 102: 7823-8. PMID 15899978 DOI: 10.1073/pnas.0501170102  1
2005 Ross W, Gourse RL. Sequence-independent upstream DNA-alphaCTD interactions strongly stimulate Escherichia coli RNA polymerase-lacUV5 promoter association. Proceedings of the National Academy of Sciences of the United States of America. 102: 291-6. PMID 15626760 DOI: 10.1073/pnas.0405814102  1
2004 Paul BJ, Ross W, Gaal T, Gourse RL. rRNA transcription in Escherichia coli. Annual Review of Genetics. 38: 749-70. PMID 15568992 DOI: 10.1146/annurev.genet.38.072902.091347  1
2004 Krásný L, Gourse RL. An alternative strategy for bacterial ribosome synthesis: Bacillus subtilis rRNA transcription regulation. The Embo Journal. 23: 4473-83. PMID 15496987 DOI: 10.1038/sj.emboj.7600423  1
2004 Paul BJ, Barker MM, Ross W, Schneider DA, Webb C, Foster JW, Gourse RL. DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP. Cell. 118: 311-22. PMID 15294157 DOI: 10.1016/j.cell.2004.07.009  1
2004 Murray HD, Gourse RL. Unique roles of the rrn P2 rRNA promoters in Escherichia coli. Molecular Microbiology. 52: 1375-87. PMID 15165240 DOI: 10.1111/j.1365-2958.2004.04060.x  1
2004 Schneider DA, Gourse RL. Relationship between growth rate and ATP concentration in Escherichia coli: a bioassay for available cellular ATP. The Journal of Biological Chemistry. 279: 8262-8. PMID 14670952 DOI: 10.1074/jbc.M311996200  1
2004 Hengge R, Gourse RL. Cell regulation: Tying together the cellular regulatory network Current Opinion in Microbiology. 7: 99-101. DOI: 10.1016/j.mib.2004.02.016  1
2003 Schneider DA, Murray HD, Gourse RL. Measuring control of transcription initiation by changing concentrations of nucleotides and their derivatives. Methods in Enzymology. 370: 606-17. PMID 14712679 DOI: 10.1016/S0076-6879(03)70051-2  1
2003 Stokes NR, Murray HD, Subramaniam C, Gourse RL, Louis P, Bartlett W, Miller S, Booth IR. A role for mechanosensitive channels in survival of stationary phase: regulation of channel expression by RpoS. Proceedings of the National Academy of Sciences of the United States of America. 100: 15959-64. PMID 14671322 DOI: 10.1073/pnas.2536607100  1
2003 Schneider DA, Gourse RL. Changes in the concentrations of guanosine 5'-diphosphate 3'-diphosphate and the initiating nucleoside triphosphate account for inhibition of rRNA transcription in fructose-1,6-diphosphate aldolase (fda) mutants. Journal of Bacteriology. 185: 6192-4. PMID 14526031 DOI: 10.1128/JB.185.20.6192-6194.2003  1
2003 Schneider DA, Gourse RL. Changes in Escherichia coli rRNA promoter activity correlate with changes in initiating nucleoside triphosphate and guanosine 5' diphosphate 3'-diphosphate concentrations after induction of feedback control of ribosome synthesis. Journal of Bacteriology. 185: 6185-91. PMID 14526030 DOI: 10.1128/JB.185.20.6185-6191.2003  1
2003 Murray HD, Schneider DA, Gourse RL. Control of rRNA expression by small molecules is dynamic and nonredundant. Molecular Cell. 12: 125-34. PMID 12887898 DOI: 10.1016/S1097-2765(03)00266-1  1
2003 Ross W, Schneider DA, Paul BJ, Mertens A, Gourse RL. An intersubunit contact stimulating transcription initiation by E coli RNA polymerase: interaction of the alpha C-terminal domain and sigma region 4. Genes & Development. 17: 1293-307. PMID 12756230 DOI: 10.1101/gad.1079403  1
2003 Schneider DA, Ross W, Gourse RL. Control of rRNA expression in Escherichia coli. Current Opinion in Microbiology. 6: 151-6. PMID 12732305 DOI: 10.1016/S1369-5274(03)00038-9  1
2003 Murray HD, Appleman JA, Gourse RL. Regulation of the Escherichia coli rrnB P2 promoter. Journal of Bacteriology. 185: 28-34. PMID 12486037 DOI: 10.1128/JB.185.1.28-34.2003  1
2002 Peck MC, Gaal T, Fisher RF, Gourse RL, Long SR. The RNA polymerase alpha subunit from Sinorhizobium meliloti can assemble with RNA polymerase subunits from Escherichia coli and function in basal and activated transcription both in vivo and in vitro. Journal of Bacteriology. 184: 3808-14. PMID 12081950 DOI: 10.1128/JB.184.14.3808-3814.2002  1
2002 Schneider DA, Gaal T, Gourse RL. NTP-sensing by rRNA promoters in Escherichia coli is direct. Proceedings of the National Academy of Sciences of the United States of America. 99: 8602-7. PMID 12060720 DOI: 10.1073/pnas.132285199  1
2002 Savery NJ, Lloyd GS, Busby SJ, Thomas MS, Ebright RH, Gourse RL. Determinants of the C-terminal domain of the Escherichia coli RNA polymerase alpha subunit important for transcription at class I cyclic AMP receptor protein-dependent promoters. Journal of Bacteriology. 184: 2273-80. PMID 11914359 DOI: 10.1128/JB.184.8.2273-2280.2002  1
2002 McLeod SM, Aiyar SE, Gourse RL, Johnson RC. The C-terminal domains of the RNA polymerase alpha subunits: contact site with Fis and localization during co-activation with CRP at the Escherichia coli proP P2 promoter. Journal of Molecular Biology. 316: 517-29. PMID 11866515 DOI: 10.1006/jmbi.2001.5391  1
2002 Aiyar SE, McLeod SM, Ross W, Hirvonen CA, Thomas MS, Johnson RC, Gourse RL. Architecture of Fis-activated transcription complexes at the Escherichia coli rrnB P1 and rrnE P1 promoters. Journal of Molecular Biology. 316: 501-16. PMID 11866514 DOI: 10.1006/jmbi.2001.5390  1
2002 Aiyar SE, Gaal T, Gourse RL. rRNA promoter activity in the fast-growing bacterium Vibrio natriegens. Journal of Bacteriology. 184: 1349-58. PMID 11844764  1
2001 Gaal T, Ross W, Estrem ST, Nguyen LH, Burgess RR, Gourse RL. Promoter recognition and discrimination by EσS RNA polymerase Molecular Microbiology. 42: 939-954. PMID 11737638 DOI: 10.1046/j.1365-2958.2001.02703.x  1
2001 Meng W, Belyaeva T, Savery NJ, Busby SJW, Ross WE, Gaal T, Gourse RL, Thomas MS. UP element-dependent transcription at the Escherichia coli rrnB P1 promoter: Positional requirements and role of the RNA polymerase α subunit linker Nucleic Acids Research. 29: 4166-4178. PMID 11600705  1
2001 Barker MM, Gourse RL. Regulation of rRNA transcription correlates with nucleoside triphosphate sensing. Journal of Bacteriology. 183: 6315-23. PMID 11591676 DOI: 10.1128/JB.183.21.6315-6323.2001  1
2001 Hirvonen CA, Ross W, Wozniak CE, Marasco E, Anthony JR, Aiyar SE, Newburn VH, Gourse RL. Contributions of UP elements and the transcription factor FIS to expression from the seven rrn P1 promoters in Escherichia coli. Journal of Bacteriology. 183: 6305-14. PMID 11591675 DOI: 10.1128/JB.183.21.6305-6314.2001  1
2001 Ross W, Ernst A, Gourse RL. Fine structure of E. coli RNA polymerase-promoter interactions: α subunit binding to the UP element minor groove Genes and Development. 15: 491-506. PMID 11238372 DOI: 10.1101/gad.870001  1
2001 Barker MM, Gaal T, Gourse RL. Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP. Journal of Molecular Biology. 305: 689-702. PMID 11162085 DOI: 10.1006/jmbi.2000.4328  1
2001 Barker MM, Gaal T, Josaitis CA, Gourse RL. Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro. Journal of Molecular Biology. 305: 673-88. PMID 11162084 DOI: 10.1006/jmbi.2000.4327  1
2000 Gourse RL, Ross W, Gaal T. UPs and downs in bacterial transcription initiation: The role of the alpha subunit of RNA polymerase in promoter recognition Molecular Microbiology. 37: 687-695. PMID 10972792 DOI: 10.1046/j.1365-2958.2000.01972.x  1
2000 Bartlett MS, Gaal T, Ross W, Gourse RL. Regulation of rRNA transcription is remarkably robust: FIS compensates for altered nucleoside triphosphate sensing by mutant RNA polymerases at Escherichia coli rrn P1 promoters. Journal of Bacteriology. 182: 1969-77. PMID 10715005 DOI: 10.1128/JB.182.7.1969-1977.2000  1
1999 McLeod SM, Xu J, Cramton SE, Gaal T, Gourse RL, Johnson RC. Localization of amino acids required for Fis to function as a class II transcriptional activator at the RpoS-dependent proP P2 promoter. Journal of Molecular Biology. 294: 333-46. PMID 10610762 DOI: 10.1006/jmbi.1999.3262  1
1999 Estrem ST, Ross W, Gaal T, Chen ZWS, Niu W, Ebright RH, Gourse RL. Bacterial promoter architecture: Subsite structure of UP elements and interactions with the carboxy-terminal domain of the RNA polymerase α subunit Genes and Development. 13: 2134-2147. PMID 10465790  1
1999 Voulgaris J, French S, Gourse RL, Squires C, Squires CL. Increased rrn gene dosage causes intermittent transcription of rRNA in Escherichia coli Journal of Bacteriology. 181: 4170-4175. PMID 10400572  1
1999 Ross W, Salomon J, Holmes WM, Gourse RL. Activation of Escherichia coli leuV transcription by FIS Journal of Bacteriology. 181: 3864-3868. PMID 10368169  1
1999 He Y, Gaal T, Karls R, Donohue TJ, Gourse RL, Roberts GP. Transcription activation by CooA, the CO-sensing factor from Rhodospirillum rubrum: The interaction between CooA and the C-terminal domain of the α subunit of RNA polymerase Journal of Biological Chemistry. 274: 10840-10845. PMID 10196160 DOI: 10.1074/jbc.274.16.10840  1
1998 Gourse RL, Gaal T, Aiyar SE, Barker MM, Estrem ST, Hirvonen CA, Ross W. Strength and regulation without transcription factors: lessons from bacterial rRNA promoters. Cold Spring Harbor Symposia On Quantitative Biology. 63: 131-9. PMID 10384277  1
1998 Kainz M, Gourse RL. The C-terminal domain of the alpha subunit of Escherichia coli RNA polymerase is required for efficient rho-dependent transcription termination Journal of Molecular Biology. 284: 1379-1390. PMID 9878357 DOI: 10.1006/jmbi.1998.2272  1
1998 Aiyar SE, Gourse RL, Ross W. Upstream A-tracts increase bacterial promoter activity through interactions with the RNA polymerase alpha subunit. Proceedings of the National Academy of Sciences of the United States of America. 95: 14652-7. PMID 9843944 DOI: 10.1073/pnas.95.25.14652  1
1998 Ross W, Aiyar SE, Salomon J, Gourse RL. Escherichia coli promoters with UP elements of different strengths: modular structure of bacterial promoters. Journal of Bacteriology. 180: 5375-83. PMID 9765569  1
1998 Estrem ST, Gaal T, Ross W, Gourse RL. Identification of an UP element consensus sequence for bacterial promoters Proceedings of the National Academy of Sciences of the United States of America. 95: 9761-9766. PMID 9707549 DOI: 10.1073/pnas.95.17.9761  1
1998 Bartlett MS, Gaal T, Ross W, Gourse RL. RNA polymerase mutants that destabilize RNA polymerase-promoter complexes alter NTP-sensing by rrn P1 promoters. Journal of Molecular Biology. 279: 331-45. PMID 9642041 DOI: 10.1006/jmbi.1998.1779  1
1998 Savery NJ, Lloyd GS, Kainz M, Gaal T, Ross W, Ebright RH, Gourse RL, Busby SJW. Transcription activation at class II CRP-dependent promoters: Identification of determinants in the C-terminal domain of the RNA polymerase α subunit Embo Journal. 17: 3439-3447. PMID 9628879 DOI: 10.1093/emboj/17.12.3439  1
1998 Tan M, Gaal T, Gourse RL, Engel JN. Mutational analysis of the Chlamydia trachomatis rRNA P1 promoter defines four regions important for transcription in vitro Journal of Bacteriology. 180: 2359-2366. PMID 9573186  1
1998 Appleman JA, Ross W, Salomon J, Gourse RL. Activation of Escherichia coli rRNA transcription by FIS during a growth cycle Journal of Bacteriology. 180: 1525-1532. PMID 9515922  1
1997 Gaal T, Bartlett MS, Ross W, Turnbough CL, Gourse RL. Transcription regulation by initiating NTP concentration: rRNA synthesis in bacteria. Science (New York, N.Y.). 278: 2092-7. PMID 9405339 DOI: 10.1126/science.278.5346.2092  1
1997 Bokal AJ, Ross W, Gaal T, Johnson RC, Gourse RL. Molecular anatomy of a transcription activation patch: FIS-RNA polymerase interactions at the Escherichia coli rrnB P1 promoter Embo Journal. 16: 154-162. PMID 9009276 DOI: 10.1093/emboj/16.1.154  1
1997 van Ulsen P, Hillebrand M, Kainz M, Collard R, Zulianello L, van de Putte P, Gourse RL, Goosen N. Function of the C-terminal domain of the alpha subunit of Escherichia coli RNA polymerase in basal expression and integration host factor-mediated activation of the early promoter of bacteriophage Mu. Journal of Bacteriology. 179: 530-7. PMID 8990307  1
1996 Gourse RL, Gaal T, Bartlett MS, Appleman JA, Ross W. rRNA transcription and growth rate-dependent regulation of ribosome synthesis in Escherichia coli. Annual Review of Microbiology. 50: 645-77. PMID 8905094 DOI: 10.1146/annurev.micro.50.1.645  1
1996 Gosink KK, Gaal T, Bokal IV AJ, Gourse RL. A positive control mutant of the transcription activator protein FIS Journal of Bacteriology. 178: 5182-5187. PMID 8752336  1
1996 Gaal T, Ross W, Blatter EE, Tang H, Jia X, Krishnan VV, Assa-Munt N, Ebright RH, Gourse RL. DNA-binding determinants of the α subunit of RNA polymerase: Novel DNA-binding domain architecture Genes and Development. 10: 16-26. PMID 8557191  1
1995 Josaitis CA, Gaal T, Gourse RL. Stringent control and growth-rate-dependent control have nonidentical promoter sequence requirements Proceedings of the National Academy of Sciences of the United States of America. 92: 1117-1121. PMID 7862645 DOI: 10.1073/pnas.92.4.1117  1
1995 Bokal AJ, Ross W, Gourse RL. The transcriptional activator protein FIS: DNA interactions and cooperative interactions with RNA polymerase at the Escherichia coli rrnB P1 promoter Journal of Molecular Biology. 245: 197-207. PMID 7844812 DOI: 10.1006/jmbi.1994.0016  1
1994 Rao L, Ross W, Appleman JA, Gaal T, Leirmo S, Schlax PJ, Record MT, Gourse RL. Factor independent activation of rrnB p1. An 'Extended' promoter with an upstream element that dramatically increases promoter strength Journal of Molecular Biology. 235: 1421-1435. PMID 8107083 DOI: 10.1006/jmbi.1994.1098  1
1994 Blatter EE, Ross W, Tang H, Gourse RL, Ebright RH. Domain organization of RNA polymerase α subunit: C-terminal 85 amino acids constitute a domain capable of dimerization and DNA binding Cell. 78: 889-896. PMID 8087855 DOI: 10.1016/S0092-8674(94)90682-3  1
1994 Bartlett MS, Gourse RL. Growth rate-dependent control of the rrnB P1 core promoter in Escherichia coli. Journal of Bacteriology. 176: 5560-4. PMID 8071240  1
1994 Gaal T, Rao L, Estrem ST, Yang J, Wartell RM, Gourse RL. Localization of the intrinsically bent DNA region upstream of the E.coli rrnB P1 promoter. Nucleic Acids Research. 22: 2344-50. PMID 8036162 DOI: 10.1093/nar/22.12.2344  1
1993 Gosink KK, Ross W, Leirmo S, Osuna R, Finkel SE, Johnson RC, Gourse RL. DNA binding and bending are necessary but not sufficient for Fis-dependent activation of rrnB P1. Journal of Bacteriology. 175: 1580-9. PMID 8449867  1
1993 Newlands JT, Gaal T, Mecsas J, Gourse RL. Transcription of the Escherichia coli rrnB P1 promoter by the heat shock RNA polymerase (Eσ32) in vitro Journal of Bacteriology. 175: 661-668. PMID 8423142  1
1993 Ross W, Gosink KK, Salomon J, Igarashi K, Zou C, Ishihama A, Severinov K, Gourse RL. A third recognition element in bacterial promoters: DNA binding by the α subunit of RNA polymerase Science. 262: 1407-1413. PMID 8248780  1
1993 Borukhov S, Sagitov V, Josaitis CA, Gourse RL, Goldfarb A. Two modes of transcription initiation in vitro at the rrnB P1 promoter of Escherichia coli Journal of Biological Chemistry. 268: 23477-23482. PMID 8226874  1
1992 Newlands JT, Josaitis CA, Ross W, Gourse RL. Both fis-dependent and factor-independent upstream activation of the rrnB P1 promoter are face of the helix dependent Nucleic Acids Research. 20: 719-726. PMID 1542568 DOI: 10.1093/nar/20.4.719  1
1992 Filutowicz M, Ross W, Wild J, Gourse RL. Involvement of fis protein in replication of the Escherichia coli chromosome Journal of Bacteriology. 174: 398-407. PMID 1309527  1
1991 Leirmo S, Gourse RL. Factor-independent activation of Escherichia coli rRNA transcription. I. Kinetic analysis of the roles of the upstream activator region and supercoiling on transcription of the rrnB P1 promoter in vitro Journal of Molecular Biology. 220: 555-568. PMID 1870123 DOI: 10.1016/0022-2836(91)90100-K  1
1991 Singer M, Walter WA, Cali BM, Rouviere P, Liebke HH, Gourse RL, Gross CA. Physiological effects of the fructose-1,6-diphosphate aldolase ts8 mutation on stable RNA synthesis in Escherichia coli Journal of Bacteriology. 173: 6249-6257. PMID 1717436  1
1991 Newlands JT, Ross W, Gosink KK, Gourse RL. Factor-independent activation of Escherichia coli rRNA transcription. II. Characterization of complexes of rrnB P1 promoters containing or lacking the upstream activator region with Escherichia coli RNA polymerase Journal of Molecular Biology. 220: 569-583. PMID 1651394 DOI: 10.1016/0022-2836(91)90101-B  1
1990 Ross W, Thompson JF, Newlands JT, Gourse RL. E.coli Fis protein activates ribosomal RNA transcription in vitro and in vivo Embo Journal. 9: 3733-3742. PMID 2209559  1
1990 Gaal T, Gourse RL. Guanosine 3'-diphosphate 5'-diphosphate is not required for growth rate-dependent control of rRNA synthesis in Escherichia coli Proceedings of the National Academy of Sciences of the United States of America. 87: 5533-5537. PMID 2196571 DOI: 10.1073/pnas.87.14.5533  1
1990 Josaitis CA, Gaal T, Ross W, Gourse RL. Sequences upstream of the -35 hexamer of rrnB P1 affect promoter strength and upstream activation Bba - Gene Structure and Expression. 1050: 307-311. PMID 2119814 DOI: 10.1016/0167-4781(90)90186-6  1
1989 Dickson RR, Gaal T, deBoer HA, deHaseth PL, Gourse RL. Identification of promoter mutants defective in growth-rate-dependent regulation of rRNA transcription in Escherichia coli Journal of Bacteriology. 171: 4862-4870. PMID 2670896  1
1989 Gaal T, Barkei J, Dickson RR, DeBoer HA, DeHaseth PL, Alavi H, Gourse RL. Saturation mutagenesis of an Escherichia coli rRNA promoter and initial characterization of promoter variants Journal of Bacteriology. 171: 4852-4861. PMID 2527844  1
1988 Gourse RL. Visualization and quantitative analysis of complex formation between E.coli RNA polymerase and an rRNA promoter in vitro Nucleic Acids Research. 16: 9789-9809. PMID 3054811 DOI: 10.1093/nar/16.20.9789  1
1986 Gourse RL, de Boer HA, Nomura M. DNA determinants of rRNA synthesis in E. coli: Growth rate dependent regulation, feedback inhibition, upstream activation, antitermination Cell. 44: 197-205. PMID 2416474 DOI: 10.1016/0092-8674(86)90498-8  1
1985 Sharrock RA, Gourse RL, Nomura M. Defective antitermination of rRNA transcription and derepression of rRNA and tRNA synthesis in the nusB5 mutant of Escherichia coli Proceedings of the National Academy of Sciences of the United States of America. 82: 5275-5279. PMID 3161080  1
1985 Sharrock RA, Gourse RL, Nomura M. Inhibitory effect of high-level transcription of the bacteriophage λ nutL region on transcription of rRNA in Escherichia coli Journal of Bacteriology. 163: 704-708. PMID 3160688  1
1985 Gourse RL, Takebe Y, Sharrock RA, Nomura M. Feedback regulation of rRNA and tRNA synthesis and accumulation of free ribosomes after conditional expression of rRNA genes Proceedings of the National Academy of Sciences of the United States of America. 82: 1069-1073. PMID 3156375  1
1985 Stark MJR, Gourse RL, Jemiolo DK, Dahlberg AE. A mutation in an Escherichia coli ribosomal RNA operon that blocks the production of precursor 23 S ribosomal RNA by RNase III in vivo and in vitro Journal of Molecular Biology. 182: 205-216. PMID 2582139 DOI: 10.1016/0022-2836(85)90339-0  1
1984 Stark MJ, Gregory RJ, Gourse RL, Thurlow DL, Zwieb C, Zimmermann RA, Dahlberg AE. Effects of site-directed mutations in the central domain of 16 S ribosomal RNA upon ribosomal protein binding, RNA processing and 30 S subunit assembly. Journal of Molecular Biology. 178: 303-22. PMID 6208367 DOI: 10.1016/0022-2836(84)90146-3  1
1984 Gregory RJ, Zeller ML, Thurlow DL, Gourse RL, Stark MJ, Dahlberg AE, Zimmermann RA. Interaction of ribosomal proteins S6, S8, S15 and S18 with the central domain of 16 S ribosomal RNA from Escherichia coli. Journal of Molecular Biology. 178: 287-302. PMID 6208366 DOI: 10.1016/0022-2836(84)90145-1  1
1984 Gourse RL, Nomura M. Level of rRNA, not tRNA, synthesis controls transcription of rRNA and tRNA operons in Escherichia coli Journal of Bacteriology. 160: 1022-1026. PMID 6094496  1
1983 Ware VC, Tague BW, Clark CG, Gourse RL, Brand RC, Gerbi SA. Sequence analysis of 28S ribosomal DNA from the amphibian Xenopus laevis. Nucleic Acids Research. 11: 7795-817. PMID 6359063 DOI: 10.1093/nar/11.22.7795  1
1983 Jinks-Robertson S, Gourse RL, Nomura M. Expression of rRNA and tRNA genes in Escherichia coli: Evidence for feedback regulation by products of rRNA operons Cell. 33: 865-876. PMID 6191870 DOI: 10.1016/0092-8674(83)90029-6  1
1983 Gourse RL, Stark MJR, Dahlberg AE. Regions of DNA involved in the stringent control of plasmid-encoded rRNA in vivo Cell. 32: 1347-1354. PMID 6188538 DOI: 10.1016/0092-8674(83)90315-X  1
1982 Stark MJR, Gourse RL, Dahlberg AE. Site-directed mutagenesis of ribosomal RNA. Analysis of ribosomal RNA deletion mutants using maxicells Journal of Molecular Biology. 159: 417-439. PMID 6187923 DOI: 10.1016/0022-2836(82)90292-3  1
1982 Gourse RL, Stark MJR, Dahlberg AE. Site-directed mutagenesis of ribosomal RNA. Construction and characterization of deletion mutants Journal of Molecular Biology. 159: 397-416. PMID 6187922 DOI: 10.1016/0022-2836(82)90291-1  1
1981 Gourse RL, Thurlow DL, Gerbi SA, Zimmermann RA. Specific binding of a prokaryotic ribosomal protein to a eukaryotic ribosomal RNA: implications for evolution and autoregulation. Proceedings of the National Academy of Sciences of the United States of America. 78: 2722-6. PMID 6265904  1
1980 Gourse RL, Gerbi SA. Fine structure of ribosomal RNA. IV. Extraordinary evolutionary conservation in sequences that flank introns in rDNA. Nucleic Acids Research. 8: 3623-37. PMID 6253905 DOI: 10.1093/nar/8.16.3623  1
1980 Gourse RL, Gerbi SA. Fine structure of ribosomal RNA. III. Location of evolutionarily conserved regions within ribosomal DNA. Journal of Molecular Biology. 140: 321-39. PMID 6253644 DOI: 10.1016/0022-2836(80)90109-6  1
1977 Lederberg S, Gourse RL, Sackett DL. Colcemid sensitivity of fission yeast: Premeability and detoxification properties of resistant mutants Journal of Bacteriology. 129: 198-201. PMID 830640  1
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