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Daniel Jay Klionsky - Publications

Affiliations: 
2000 Microbiology University of California, Davis, Davis, CA 
 2000- Molecular, Cellular, and Developmental Biology University of Michigan, Ann Arbor, Ann Arbor, MI 
Area:
Cell Biology, Microbiology Biology
Website:
https://lsa.umich.edu/mcdb/people/faculty/klionsky.html
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472 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Popelka H, Klionsky DJ. The emerging significance of Vac8, a multi-purpose armadillo-repeat protein in yeast. Autophagy. 1-4. PMID 39045779 DOI: 10.1080/15548627.2024.2377377  0.35
2024 Wu N, Zheng W, Zhou Y, Tian Y, Tang M, Feng X, Ashrafizadeh M, Wang Y, Niu X, Tambuwala M, Wang L, Tergaonkar V, Sethi G, Klionsky D, Huang L, et al. Autophagy in aging-related diseases and cancer: Principles, regulatory mechanisms and therapeutic potential. Ageing Research Reviews. 102428. PMID 39038742 DOI: 10.1016/j.arr.2024.102428  0.327
2024 Huang Y, Klionsky DJ. Pho81 is a novel regulator of pexophagy induced by phosphate starvation. Autophagy. 1-2. PMID 38991544 DOI: 10.1080/15548627.2024.2377421  0.301
2024 Yang Y, Pan Z, Sun J, Welch J, Klionsky DJ. Autophagy and machine learning: Unanswered questions. Biochimica Et Biophysica Acta. Molecular Basis of Disease. 167263. PMID 38801963 DOI: 10.1016/j.bbadis.2024.167263  0.319
2024 Pangilinan C, Klionsky DJ, Liang C. Emerging Dimensions of Autophagy in Melanoma. Autophagy. PMID 38497492 DOI: 10.1080/15548627.2024.2330261  0.307
2024 Yin Z, Klionsky DJ. Pink1 balances reticulophagy and mitophagy by regulating distinct E3 ubiquitin ligases. Autophagy. 1-2. PMID 38456640 DOI: 10.1080/15548627.2024.2323294  0.306
2024 Chen X, Tsvetkov AS, Shen HM, Isidoro C, Ktistakis NT, Linkermann A, Koopman WJH, Simon HU, Galluzzi L, Luo S, Xu D, Gu W, Peulen O, Cai Q, Rubinsztein DC, ... ... Klionsky DJ, et al. International consensus guidelines for the definition, detection, and interpretation of autophagy-dependent ferroptosis. Autophagy. PMID 38442890 DOI: 10.1080/15548627.2024.2319901  0.345
2023 Metur SP, Klionsky DJ. Nutrient-dependent signaling pathways that control autophagy in yeast. Febs Letters. PMID 37758520 DOI: 10.1002/1873-3468.14741  0.313
2023 Qin Y, Ashrafizadeh M, Mongiardini V, Grimaldi B, Crea F, Rietdorf K, Győrffy B, Klionsky DJ, Ren J, Zhang W, Zhang X. Autophagy and cancer drug resistance in dialogue: Pre-clinical and clinical evidence. Cancer Letters. 216307. PMID 37451426 DOI: 10.1016/j.canlet.2023.216307  0.311
2023 Delorme-Axford E, Wen X, Klionsky DJ. The yeast transcription factor Stb5 acts as a negative regulator of autophagy by modulating cellular metabolism. Autophagy. 1-14. PMID 37345792 DOI: 10.1080/15548627.2023.2228533  0.347
2023 Metur SP, Lei Y, Zhang Z, Klionsky DJ. Regulation of autophagy gene expression and its implications in cancer. Journal of Cell Science. 136. PMID 37199330 DOI: 10.1242/jcs.260631  0.33
2023 Lei Y, Klionsky DJ. Transcriptional regulation of autophagy and its implications in human disease. Cell Death and Differentiation. PMID 37045910 DOI: 10.1038/s41418-023-01162-9  0.308
2023 Zhu XM, Li L, Bao JD, Wang JY, Liang S, Zhao LL, Huang CL, Yan JY, Cai YY, Wu XY, Dong B, Liu XH, Klionsky DJ, Lin FC. MoVast2 combined with MoVast1 regulates lipid homeostasis and autophagy in . Autophagy. PMID 36803211 DOI: 10.1080/15548627.2023.2181739  0.423
2022 Lei Y, Wen X, Klionsky DJ. Vps13 is required for efficient autophagy in . Contact (Thousand Oaks (Ventura County, Calif.)). 5. PMID 37151407 DOI: 10.1177/25152564221136388  0.383
2022 Patra S, Patil S, Klionsky DJ, Bhutia SK. Lysosome signaling in cell survival and programmed cell death for cellular homeostasis. Journal of Cellular Physiology. PMID 36502521 DOI: 10.1002/jcp.30928  0.344
2022 Martelli A, Omrani M, Zarghooni M, Citi V, Brogi S, Calderone V, Sureda A, Lorzadeh S, da Silva Rosa SC, Grabarek BO, Staszkiewicz R, Los MJ, Nabavi SF, Nabavi SM, Mehrbod P, ... Klionsky DJ, et al. New Visions on Natural Products and Cancer Therapy: Autophagy and Related Regulatory Pathways. Cancers. 14. PMID 36497321 DOI: 10.3390/cancers14235839  0.358
2022 González-Rodríguez P, Delorme-Axford E, Bernard A, Keane L, Stratoulias V, Grabert K, Engskog-Vlachos P, Füllgrabe J, Klionsky DJ, Joseph B. SETD2 transcriptional control of ATG14L/S isoforms regulates autophagosome-lysosome fusion. Cell Death & Disease. 13: 953. PMID 36371383 DOI: 10.1038/s41419-022-05381-9  0.401
2022 Hawkins WD, Grush ER, Klionsky DJ. The world's first (and probably last) autophagy video game. Autophagy. 1-6. PMID 36324276 DOI: 10.1080/15548627.2022.2143212  0.36
2022 Wang L, Klionsky DJ, Shen HM. The emerging mechanisms and functions of microautophagy. Nature Reviews. Molecular Cell Biology. PMID 36097284 DOI: 10.1038/s41580-022-00529-z  0.379
2022 Liu J, Liu Y, Wang Y, Li C, Xie Y, Klionsky DJ, Kang R, Tang D. TMEM164 is a new determinant of autophagy-dependent ferroptosis. Autophagy. PMID 35947500 DOI: 10.1080/15548627.2022.2111635  0.378
2022 Yu G, Klionsky DJ. Life and Death Decisions-The Many Faces of Autophagy in Cell Survival and Cell Death. Biomolecules. 12. PMID 35883421 DOI: 10.3390/biom12070866  0.332
2022 Leary KA, Hawkins WD, Andhare D, Popelka H, Klionsky DJ, Ragusa MJ. Atg23 is a vesicle-tethering protein. Autophagy. 1-2. PMID 35867625 DOI: 10.1080/15548627.2022.2105107  0.343
2022 Shen ZF, Li L, Zhu XM, Liu XH, Klionsky DJ, Lin FC. Current opinions on mitophagy in fungi. Autophagy. 1-11. PMID 35793406 DOI: 10.1080/15548627.2022.2098452  0.302
2022 Kaarniranta K, Blasiak J, Liton P, Boulton M, Klionsky DJ, Sinha D. Autophagy in age-related macular degeneration. Autophagy. 1-13. PMID 35468037 DOI: 10.1080/15548627.2022.2069437  0.315
2022 Chen X, Song X, Li J, Zhang R, Yu C, Zhou Z, Liu J, Liao S, Klionsky DJ, Kroemer G, Liu J, Tang D, Kang R. Identification of HPCAL1 as a specific autophagy receptor involved in ferroptosis. Autophagy. 1-21. PMID 35403545 DOI: 10.1080/15548627.2022.2059170  0.333
2022 Yang Y, Gatica D, Liu X, Wu R, Kang R, Tang D, Klionsky DJ. Upstream open reading frames mediate autophagy-related protein translation. Autophagy. 1-17. PMID 35363116 DOI: 10.1080/15548627.2022.2059744  0.36
2022 Wang F, Yang Y, Boudagh G, Eskelinen EL, Klionsky DJ, Malek SN. Follicular lymphoma-associated mutations in the V-ATPase chaperone VMA21 activate autophagy creating a targetable dependency. Autophagy. 1-19. PMID 35287545 DOI: 10.1080/15548627.2022.2050663  0.305
2022 Yin Z, Zhang Z, Lei Y, Klionsky DJ. Bidirectional roles of the Ccr4-Not complex in regulating autophagy before and after nitrogen starvation. Autophagy. 1-11. PMID 35167422 DOI: 10.1080/15548627.2022.2036476  0.349
2021 Lei Y, Klionsky DJ. New regulators of PRKN-independent mitophagy. Autophagy. 18: 1-3. PMID 34927553 DOI: 10.1080/15548627.2021.2012867  0.343
2021 Lahiri V, Metur SP, Hu Z, Song X, Mari M, Hawkins WD, Bhattarai J, Delorme-Axford E, Reggiori F, Tang D, Dengjel J, Klionsky DJ. Post-transcriptional regulation of is a critical node that modulates autophagy during distinct nutrient stresses. Autophagy. 1-21. PMID 34836487 DOI: 10.1080/15548627.2021.1997305  0.336
2021 Lei Y, Klionsky DJ. The Emerging Roles of Autophagy in Human Diseases. Biomedicines. 9. PMID 34829881 DOI: 10.3390/biomedicines9111651  0.314
2021 Hawkins WD, Klionsky DJ. The expanding role of Atg8. Autophagy. 1-2. PMID 34482799 DOI: 10.1080/15548627.2021.1967566  0.363
2021 Ariosa AR, Lahiri V, Lei Y, Yang Y, Yin Z, Zhang Z, Klionsky DJ. A Perspective on the Role of Autophagy in Cancer. Biochimica Et Biophysica Acta. Molecular Basis of Disease. 166262. PMID 34481059 DOI: 10.1016/j.bbadis.2021.166262  0.79
2021 Patra S, Praharaj PP, Klionsky DJ, Bhutia SK. Vorinostat in autophagic cell death: A critical insight into autophagy-mediated, -associated and -dependent cell death for cancer prevention. Drug Discovery Today. PMID 34400351 DOI: 10.1016/j.drudis.2021.08.004  0.344
2021 Popelka H, Klionsky DJ. Multiple structural rearrangements mediated by high-plasticity regions in Atg3 are key for efficient conjugation of Atg8 to PE during autophagy. Autophagy. 17: 1805-1808. PMID 34338142 DOI: 10.1080/15548627.2021.1954457  0.327
2021 Huang YJ, Klionsky DJ. Yeast mitophagy: Unanswered questions. Biochimica Et Biophysica Acta. General Subjects. 129932. PMID 34022298 DOI: 10.1016/j.bbagen.2021.129932  0.309
2021 Klionsky DJ, Abdel-Aziz AK, Abdelfatah S, Abdellatif M, Abdoli A, Abel S, Abeliovich H, Abildgaard MH, Abudu YP, Acevedo-Arozena A, Adamopoulos IE, Adeli K, Adolph TE, Adornetto A, Aflaki E, et al. Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy. 1-382. PMID 33634751 DOI: 10.1080/15548627.2020.1797280  0.823
2021 Popelka H, Reinhart EF, Padma Metur S, Leary KA, Ragusa MJ, Klionsky DJ. Membrane binding and homodimerization of Atg16 via two distinct protein regions is essential for autophagy in yeast. Journal of Molecular Biology. 166809. PMID 33484718 DOI: 10.1016/j.jmb.2021.166809  0.301
2021 Feng Y, Ariosa AR, Yang Y, Hu Z, Dengjel J, Klionsky DJ. Downregulation of autophagy by Met30-mediated Atg9 ubiquitination. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33443148 DOI: 10.1073/pnas.2005539118  0.814
2021 Huang YJ, Klionsky DJ. Did evolution choose Atg11 as the scaffolding platform beyond selective autophagy? Autophagy. 1-2. PMID 33404291 DOI: 10.1080/15548627.2021.1872176  0.347
2021 Li J, Liu J, Xu Y, Wu R, Chen X, Song X, Zeh H, Kang R, Klionsky DJ, Wang X, Tang D. Tumor Heterogeneity in Autophagy-Dependent Ferroptosis. Autophagy. PMID 33404288 DOI: 10.1080/15548627.2021.1872241  0.331
2020 Steinfeld N, Lahiri V, Morrison A, Metur SP, Klionsky DJ, Weisman LS. Elevating PI3P drives select downstream membrane trafficking pathways. Molecular Biology of the Cell. mbcE20030191. PMID 33237833 DOI: 10.1091/mbc.E20-03-0191  0.336
2020 Li J, Chen X, Kang R, Zeh H, Klionsky DJ, Tang D. Regulation and Function of Autophagy in Pancreatic Cancer. Autophagy. PMID 33161807 DOI: 10.1080/15548627.2020.1847462  0.313
2020 Metur SP, Klionsky DJ. Autophagy under construction: insights from reconstitution of autophagosome nucleation. Autophagy. 1-2. PMID 33092448 DOI: 10.1080/15548627.2020.1835231  0.367
2020 Yin Z, Popelka H, Lei Y, Yang Y, Klionsky DJ. The Roles of Ubiquitin in Mediating Autophagy. Cells. 9. PMID 32887506 DOI: 10.3390/Cells9092025  0.526
2020 Hawkins WD, Klionsky DJ. Structure of human ATG9A: how holey art thou? Autophagy. 1-3. PMID 32840139 DOI: 10.1080/15548627.2020.1810901  0.311
2020 Chen X, Li J, Kang R, Klionsky DJ, Tang D. Ferroptosis: Machinery and Regulation. Autophagy. PMID 32804006 DOI: 10.1080/15548627.2020.1810918  0.384
2020 Yin Z, Klionsky DJ. NPC-phagy: selective autophagy of the nuclear pore complexes. Autophagy. 1-2. PMID 32713250 DOI: 10.1080/15548627.2020.1798199  0.479
2020 Bello-Perez M, Sola I, Novoa B, Klionsky DJ, Falco A. Canonical and Noncanonical Autophagy as Potential Targets for COVID-19. Cells. 9. PMID 32635598 DOI: 10.3390/Cells9071619  0.435
2020 Mijaljica D, Klionsky DJ. Autophagy/virophagy: a "disposal strategy" to combat COVID-19. Autophagy. 1-2. PMID 32578486 DOI: 10.1080/15548627.2020.1782022  0.341
2020 Shojaei S, Suresh M, Klionsky DJ, Labouta HI, Ghavami S. Autophagy and SARS-CoV-2 infection: Apossible smart targeting of the autophagy pathway. Virulence. 11: 805-810. PMID 32567972 DOI: 10.1080/21505594.2020.1780088  0.34
2020 Wen X, Klionsky DJ. Phosphorylation of ULK1 serine 746 dictates ATG5-independent autophagy. Autophagy. 1-2. PMID 32544365 DOI: 10.1080/15548627.2020.1780844  0.395
2020 Lei Y, Klionsky DJ. Scission, a critical step in autophagosome formation. Autophagy. 1-3. PMID 32544363 DOI: 10.1080/15548627.2020.1779468  0.368
2020 Bonam SR, Muller S, Bayry J, Klionsky DJ. Autophagy as an emerging target for COVID-19: lessons from an old friend, chloroquine. Autophagy. PMID 32522067 DOI: 10.1080/15548627.2020.1779467  0.343
2020 Brest P, Benzaquen J, Klionsky DJ, Hofman P, Mograbi B. Open questions for harnessing autophagy-modulating drugs in the SARS-CoV-2 war: Hope or Hype? Autophagy. PMID 32521191 DOI: 10.1080/15548627.2020.1779531  0.311
2020 Gatica D, Wen X, Cheong H, Klionsky DJ. Vac8 determines phagophore assembly site vacuolar localization during nitrogen starvation-induced autophagy. Autophagy. PMID 32508216 DOI: 10.1080/15548627.2020.1776474  0.462
2020 Delorme-Axford E, Klionsky DJ. The LC3-conjugation machinery specifies cargo loading and secretion of extracellular vesicles. Autophagy. 1-3. PMID 32401566 DOI: 10.1080/15548627.2020.1760057  0.434
2020 Gatica D, Klionsky DJ. New tricks of an old autophagy regulator: AMPK-dependent regulation of autophagy through CCNY (cyclin Y)-CDK16. Autophagy. 16: 973-974. PMID 32401167 DOI: 10.1080/15548627.2020.1756665  0.443
2020 Shang D, Wang L, Klionsky DJ, Cheng H, Zhou R. Sex differences in autophagy-mediated diseases: toward precision medicine. Autophagy. PMID 32264724 DOI: 10.1080/15548627.2020.1752511  0.325
2020 Li C, Zhang Y, Liu J, Kang R, Klionsky DJ, Tang D. Mitochondrial DNA stress triggers autophagy-dependent ferroptotic death. Autophagy. 1-13. PMID 32186434 DOI: 10.1080/15548627.2020.1739447  0.392
2020 Liu J, Kuang F, Kroemer G, Klionsky DJ, Kang R, Tang D. Autophagy-Dependent Ferroptosis: Machinery and Regulation. Cell Chemical Biology. PMID 32160513 DOI: 10.1016/J.Chembiol.2020.02.005  0.475
2020 Metur SP, Klionsky DJ. As (and when) you like it: on-demand phospholipid synthesis drives phagophore expansion during autophagy. Autophagy. 1-3. PMID 32097081 DOI: 10.1080/15548627.2020.1732713  0.339
2020 Shu WJ, Zhao MJ, Klionsky DJ, Du HN. Old factors, new players: transcriptional regulation of autophagy. Autophagy. 1-3. PMID 32054419 DOI: 10.1080/15548627.2020.1728611  0.426
2020 Yang X, Zhang W, Wen X, Bulinski PJ, Chomchai DA, Arines FM, Liu YY, Sprenger S, Teis D, Klionsky DJ, Li M. TORC1 regulates vacuole membrane composition through ubiquitin- and ESCRT-dependent microautophagy. The Journal of Cell Biology. 219. PMID 32045480 DOI: 10.1083/Jcb.201902127  0.469
2020 Klionsky DJ. Autophagy participates in, well, just about everything. Cell Death and Differentiation. 27: 831-832. PMID 32034315 DOI: 10.1038/S41418-020-0511-6  0.318
2020 Popelka H, Klionsky DJ. Molecular dynamics simulations reveal how the reticulon-homology domain of the autophagy receptor RETREG1/FAM134B remodels membranes for efficient selective reticulophagy. Autophagy. 1-4. PMID 31996076 DOI: 10.1080/15548627.2020.1719725  0.343
2020 Dai E, Han L, Liu J, Xie Y, Kroemer G, Klionsky DJ, Zeh HJ, Kang R, Wang J, Tang D. Autophagy-Dependent Ferroptosis Drives Tumor-Associated Macrophage Polarization via Release and Uptake of Oncogenic KRAS Protein. Autophagy. PMID 31920150 DOI: 10.1080/15548627.2020.1714209  0.319
2020 Yang Y, Klionsky DJ. Autophagy and disease: unanswered questions. Cell Death and Differentiation. PMID 31900427 DOI: 10.1038/S41418-019-0480-9  0.434
2019 Metur SP, Klionsky DJ. The curious case of polyamines: spermidine drives reversal of B cell senescence. Autophagy. 1-2. PMID 31795807 DOI: 10.1080/15548627.2019.1698210  0.361
2019 Wen X, Klionsky DJ. At a Glance: A History of Autophagy and Cancer. Seminars in Cancer Biology. PMID 31707087 DOI: 10.1016/J.Semcancer.2019.11.005  0.433
2019 Qiu Y, Zheng Y, Grace CRR, Liu X, Klionsky DJ, Schulman BA. Allosteric regulation through a switch element in the autophagy E2, Atg3. Autophagy. PMID 31690182 DOI: 10.1080/15548627.2019.1688550  0.309
2019 Loos B, Klionsky DJ, du Toit A, Hofmeyr JS. ON THE RELEVANCE OF PRECISION AUTOPHAGY FLUX CONTROL - POINTS OF DEPARTURE FOR CLINICAL TRANSLATION. Autophagy. PMID 31679454 DOI: 10.1080/15548627.2019.1687211  0.429
2019 Yin Z, Liu X, Ariosa A, Huang H, Jin M, Karbstein K, Klionsky DJ. Psp2, a novel regulator of autophagy that promotes autophagy-related protein translation. Cell Research. PMID 31666677 DOI: 10.1038/S41422-019-0246-4  0.824
2019 Wen X, Klionsky DJ. How bacteria can block xenophagy: an insight from . Autophagy. 1-2. PMID 31530078 DOI: 10.1080/15548627.2019.1666580  0.368
2019 Zheng L, Shu WJ, Li YM, Mari M, Yan C, Wang D, Yin ZH, Jiang W, Zhou Y, Okamoto K, Reggiori F, Klionsky DJ, Song Z, Du HN. The Paf1 complex transcriptionally regulates the mitochondrial-anchored protein Atg32 leading to activation of mitophagy. Autophagy. PMID 31525119 DOI: 10.1080/15548627.2019.1668228  0.399
2019 Yang Y, Klionsky DJ. A novel role of UBQLNs (ubiquilins) in regulating autophagy, MTOR signaling and v-ATPase function. Autophagy. 1-2. PMID 31516068 DOI: 10.1080/15548627.2019.1665293  0.46
2019 Wen X, Gatica D, Yin Z, Hu Z, Dengjel J, Klionsky DJ. The Spt4 component of the Spt4-Spt5 transcription factor complex negatively regulates the expression of . Autophagy. PMID 31462158 DOI: 10.1080/15548627.2019.1659573  0.461
2019 Liu J, Yang M, Kang R, Klionsky DJ, Tang D. Autophagic Degradation of the Circadian Clock Regulator Promotes Ferroptosis. Autophagy. PMID 31441366 DOI: 10.1080/15548627.2019.1659623  0.441
2019 Zheng Y, Qiu Y, Grace CRR, Liu X, Klionsky DJ, Schulman BA. A switch element in the autophagy E2 Atg3 mediates allosteric regulation across the lipidation cascade. Nature Communications. 10: 3600. PMID 31399562 DOI: 10.1038/S41467-019-11435-Y  0.312
2019 Delorme-Axford E, Popelka H, Klionsky DJ. TEX264 is a major receptor for mammalian reticulophagy. Autophagy. 1-5. PMID 31362563 DOI: 10.1080/15548627.2019.1646540  0.401
2019 Yang M, Chen P, Liu J, Zhu S, Kroemer G, Klionsky DJ, Lotze MT, Zeh HJ, Kang R, Tang D. Clockophagy is a novel selective autophagy process favoring ferroptosis. Science Advances. 5: eaaw2238. PMID 31355331 DOI: 10.1126/Sciadv.Aaw2238  0.466
2019 Gatica D, Damasio A, Pascual C, Klionsky DJ, Ragusa MJ, Popelka H. The carboxy terminus of yeast Atg13 binds phospholipid membrane via motifs that overlap with the Vac8-interacting domain. Autophagy. 1-14. PMID 31352862 DOI: 10.1080/15548627.2019.1648117  0.385
2019 Xu X, Shang D, Cheng H, Klionsky DJ, Zhou R. Gene essentiality of : dosage effect and autophagy regulation in retinal photoreceptors. Autophagy. PMID 31345090 DOI: 10.1080/15548627.2019.1647023  0.418
2019 Hartley S, Klionsky DJ. Found art: the yeast vacuole. Autophagy. 1-7. PMID 31305202 DOI: 10.1080/15548627.2019.1638208  0.329
2019 Deretic V, Prossnitz E, Burge M, Campen MJ, Cannon J, Liu KJ, Hall P, Sklar LA, Allers L, Mariscal L, Garcia SA, Baehrecke EH, Behrends C, Cecconi F, Codogno P, ... ... Klionsky DJ, et al. Autophagy, Inflammation, and Metabolism (AIM) Center in its second year. Autophagy. PMID 31234750 DOI: 10.1080/15548627.2019.1634444  0.323
2019 Liu X, Jin M, Yao Z, Bernard A, Klionsky DJ. Bidirectional roles of Dhh1 in regulating autophagy. Autophagy. PMID 31116636 DOI: 10.1080/15548627.2019.1621632  0.442
2019 Liu X, Yao Z, Jin M, Namkoong S, Yin Z, Lee JH, Klionsky DJ. Dhh1 promotes autophagy-related protein translation during nitrogen starvation. Plos Biology. 17: e3000219. PMID 30973873 DOI: 10.1371/Journal.Pbio.3000219  0.46
2019 Lahiri V, Hawkins WD, Klionsky DJ. Watch What You (Self-) Eat: Autophagic Mechanisms that Modulate Metabolism. Cell Metabolism. 29: 803-826. PMID 30943392 DOI: 10.1016/J.Cmet.2019.03.003  0.422
2019 Gatica D, Hu G, Zhang N, Williamson PR, Klionsky DJ. The Pat1-Lsm complex prevents 3' to 5' degradation of a specific subset of ATG mRNAs during nitrogen starvation-induced autophagy. Autophagy. 1-2. PMID 30885034 DOI: 10.1080/15548627.2019.1587262  0.448
2019 Zhou B, Liu J, Kang R, Klionsky DJ, Kroemer G, Tang D. Ferroptosis Is a Type of Autophagy-Dependent Cell Death. Seminars in Cancer Biology. PMID 30880243 DOI: 10.1016/J.Semcancer.2019.03.002  0.461
2019 Gatica D, Klionsky DJ. Towards understanding mRNA-binding protein specificity: lessons from post-transcriptional regulation of ATG mRNA during nitrogen starvation-induced autophagy. Current Genetics. PMID 30783742 DOI: 10.1007/S00294-019-00943-5  0.471
2019 Zhou XJ, Klionsky DJ, Zhang H. Podocytes and autophagy: A potential therapeutic target in lupus nephritis. Autophagy. PMID 30755075 DOI: 10.1080/15548627.2019.1580512  0.394
2019 Wang F, Gatica D, Ying ZX, Peterson LF, Kim PK, Bernard D, Saiya-Cork K, Wang S, Kaminski MS, Chang AE, Phillips T, Klionsky DJ, Malek SN. Follicular lymphoma-associated mutations in vacuolar ATPase ATP6V1B2 activate autophagic flux and MTOR. The Journal of Clinical Investigation. PMID 30720463 DOI: 10.1172/Jci98288  0.322
2019 Lahiri V, Klionsky DJ. Spatially distinct pools of TORC1 balance protein homeostasis. Autophagy. PMID 30696339 DOI: 10.1080/15548627.2019.1575162  0.393
2019 Memisoglu G, Eapen VV, Yang Y, Klionsky DJ, Haber JE. PP2C phosphatases promote autophagy by dephosphorylation of the Atg1 complex. Proceedings of the National Academy of Sciences of the United States of America. PMID 30655342 DOI: 10.1073/Pnas.1817078116  0.411
2019 Gatica D, Hu G, Liu X, Zhang N, Williamson PR, Klionsky DJ. The Pat1-Lsm Complex Stabilizes ATG mRNA during Nitrogen Starvation-Induced Autophagy. Molecular Cell. 73: 314-324.e4. PMID 30527663 DOI: 10.1016/J.Molcel.2018.11.002  0.437
2018 Liu X, Wen X, Klionsky DJ. ER-mitochondria contacts are required for pexophagy in . Contact (Thousand Oaks (Ventura County, Calif.)). 2. PMID 30859155 DOI: 10.1177/2515256418821584  0.336
2018 Liu X, Klionsky DJ. Regulation of JMY's actin nucleation activity by TTC5/STRAP and LC3 during autophagy. Autophagy. PMID 30593260 DOI: 10.1080/15548627.2018.1564417  0.403
2018 Delorme-Axford E, Klionsky DJ. On the edge of degradation: Autophagy regulation by RNA decay. Wiley Interdisciplinary Reviews. Rna. e1522. PMID 30560575 DOI: 10.1002/Wrna.1522  0.399
2018 Parzych KR, Klionsky DJ. Vacuolar hydrolysis and efflux: current knowledge and unanswered questions. Autophagy. 1-16. PMID 30422029 DOI: 10.1080/15548627.2018.1545821  0.425
2018 Kang R, Xie Y, Zeh HJ, Klionsky DJ, Tang D. Mitochondrial Quality Control Mediated by PINK1 and PRKN: Links to Iron Metabolism and Tumor Immunity. Autophagy. PMID 30252570 DOI: 10.1080/15548627.2018.1526611  0.324
2018 Popelka H, Klionsky DJ. Structural basis for extremely strong binding affinity of giant ankyrins to LC3/GABARAP and its application in the inhibition of autophagy. Autophagy. 14: 1847-1849. PMID 30231788 DOI: 10.1080/15548627.2018.1522884  0.301
2018 Mohammadinejad R, Moosavi MA, Tavakol S, Vardar DÖ, Hosseini A, Rahmati M, Dini L, Hussain S, Mandegary A, Klionsky DJ. Necrotic, apoptotic and autophagic cell fates triggered by nanoparticles. Autophagy. PMID 30160607 DOI: 10.1080/15548627.2018.1509171  0.345
2018 Kang R, Zhu S, Zeh HJ, Klionsky DJ, Tang D. BECN1 is a New Driver of Ferroptosis. Autophagy. PMID 30145930 DOI: 10.1080/15548627.2018.1513758  0.454
2018 Klionsky DJ. Why do we need to regulate autophagy (and how can we do it)? A cartoon depiction. Autophagy. PMID 30129812 DOI: 10.1080/15548627.2018.1511218  0.44
2018 Li C, Zhang Y, Cheng X, Yuan H, Zhu S, Liu J, Wen Q, Xie Y, Liu J, Kroemer G, Klionsky DJ, Lotze MT, Zeh HJ, Kang R, Tang D. PINK1 and PARK2 Suppress Pancreatic Tumorigenesis through Control of Mitochondrial Iron-Mediated Immunometabolism. Developmental Cell. PMID 30100261 DOI: 10.1016/J.Devcel.2018.07.012  0.302
2018 Jin M, Klionsky DJ. Finding a ribophagy receptor. Autophagy. 1-2. PMID 30067425 DOI: 10.1080/15548627.2018.1483672  0.341
2018 Yao Z, Klionsky DJ. Plasmodium protein UIS3 protects the parasite from autophagy clearance. Autophagy. 1-2. PMID 30067422 DOI: 10.1080/15548627.2018.1483671  0.329
2018 Khoriaty R, Hesketh GG, Bernard A, Weyand AC, Mellacheruvu D, Zhu G, Hoenerhoff MJ, McGee B, Everett L, Adams EJ, Zhang B, Saunders TL, Nesvizhskii AI, Klionsky DJ, Shavit JA, et al. Functions of the COPII gene paralogs SEC23A and SEC23B are interchangeable in vivo. Proceedings of the National Academy of Sciences of the United States of America. PMID 30065114 DOI: 10.1073/Pnas.1805784115  0.324
2018 Song X, Zhu S, Chen P, Hou W, Wen Q, Liu J, Xie Y, Liu J, Klionsky DJ, Kroemer G, Lotze MT, Zeh HJ, Kang R, Tang D. AMPK-Mediated BECN1 Phosphorylation Promotes Ferroptosis by Directly Blocking System X Activity. Current Biology : Cb. PMID 30057310 DOI: 10.1016/J.Cub.2018.05.094  0.395
2018 Sewell JC, Klionsky DJ. The phagophore in four dimensions-a study in wood. Autophagy. PMID 30009664 DOI: 10.1080/15548627.2018.1493315  0.331
2018 Yao J, Qiu Y, Frontera E, Jia L, Khan NW, Klionsky DJ, Ferguson TA, Thompson DA, Zacks DN. Inhibiting autophagy reduces retinal degeneration caused by protein misfolding. Autophagy. PMID 29940785 DOI: 10.1080/15548627.2018.1463121  0.415
2018 Deretic V, Prossnitz E, Burge M, Campen MJ, Cannon J, Liu KJ, Sklar LA, Allers L, Garcia SA, Baehrecke EH, Behrends C, Cecconi F, Codogno P, Chen GC, Elazar Z, ... ... Klionsky DJ, et al. Autophagy, Inflammation, and Metabolism (AIM) Center of Biomedical Research Excellence: supporting the next generation of autophagy researchers and fostering international collaborations. Autophagy. PMID 29938597 DOI: 10.1080/15548627.2018.1465784  0.323
2018 Lahiri V, Klionsky DJ. CCPG1 is a noncanonical autophagy cargo receptor essential for reticulophagy and pancreatic ER proteostasis. Autophagy. PMID 29911925 DOI: 10.1080/15548627.2018.1467199  0.38
2018 Popelka H, Klionsky DJ, Ragusa MJ. An atypical BAR domain protein in autophagy. Autophagy. 1-2. PMID 29799763 DOI: 10.1080/15548627.2018.1445915  0.388
2018 van Beek N, Klionsky DJ, Reggiori F. Genetic aberrations in macroautophagy genes leading to diseases. Biochimica Et Biophysica Acta. PMID 29524522 DOI: 10.1016/J.Bbamcr.2018.03.002  0.412
2018 Parzych KR, Ariosa A, Mari M, Klionsky DJ. A newly characterized vacuolar serine carboxypeptidase, Atg42/Ybr139w, is required for normal vacuole function and the terminal steps of autophagy in the yeast. Molecular Biology of the Cell. PMID 29514932 DOI: 10.1091/Mbc.E17-08-0516  0.835
2018 Gatica D, Lahiri V, Klionsky DJ. Cargo recognition and degradation by selective autophagy. Nature Cell Biology. 20: 233-242. PMID 29476151 DOI: 10.1038/S41556-018-0037-Z  0.45
2018 Delorme-Axford E, Abernathy E, Lennemann NJ, Bernard A, Ariosa A, Coyne CB, Kirkegaard K, Klionsky DJ. The Exoribonuclease Xrn1 Is a Post-Transcriptional Negative Regulator of Autophagy. Autophagy. 1-47. PMID 29465287 DOI: 10.1080/15548627.2018.1441648  0.802
2018 Delorme-Axford E, Klionsky DJ. Transcriptional and post-transcriptional regulation of autophagy in the yeast Saccharomyces cerevisiae. The Journal of Biological Chemistry. PMID 29371397 DOI: 10.1074/Jbc.R117.804641  0.466
2018 Galluzzi L, Vitale I, Aaronson SA, Abrams JM, Adam D, Agostinis P, Alnemri ES, Altucci L, Amelio I, Andrews DW, Annicchiarico-Petruzzelli M, Antonov AV, Arama E, Baehrecke EH, Barlev NA, ... ... Klionsky DJ, et al. Molecular mechanisms of cell death: recommendations of the Nomenclature Committee on Cell Death 2018. Cell Death and Differentiation. PMID 29362479 DOI: 10.1038/S41418-017-0012-4  0.362
2018 Bucci MD, Weisenhorn E, Haws S, Yao Z, Zimmerman G, Gannon M, Taggart J, Lee T, Klionsky DJ, Russell J, Coon J, Eide DJ. An Autophagy-Independent Role for ATG41 in Sulfur Metabolism During Zinc Deficiency. Genetics. PMID 29321173 DOI: 10.1534/Genetics.117.300679  0.397
2018 Deretic V, Klionsky DJ. Autophagy and inflammation: a special review issue. Autophagy. 1-4. PMID 29304718 DOI: 10.1080/15548627.2017.1412229  0.352
2017 Delorme-Axford E, Klionsky DJ. Secretory autophagy holds the key to lysozyme secretion during bacterial infection of the intestine. Autophagy. 1-9. PMID 29157080 DOI: 10.1080/15548627.2017.1401425  0.381
2017 Popelka H, Damasio A, Hinshaw JE, Klionsky DJ, Ragusa MJ. Structure and function of yeast Atg20, a sorting nexin that facilitates autophagy induction. Proceedings of the National Academy of Sciences of the United States of America. PMID 29114050 DOI: 10.1073/Pnas.1708367114  0.459
2017 Liu X, Klionsky DJ. Regulation of autophagic lysosome reformation by kinesin 1, clathrin and phosphatidylinositol-4,5-bisphosphate. Autophagy. 0. PMID 28980869 DOI: 10.1080/15548627.2017.1386821  0.388
2017 Kondratskyi A, Kondratska K, Skryma R, Klionsky DJ, Prevarskaya N. Ion channels in the regulation of autophagy. Autophagy. 0. PMID 28980859 DOI: 10.1080/15548627.2017.1384887  0.376
2017 Nanji T, Liu X, Chew LH, Li FK, Biswas M, Yu ZQ, Lu S, Dong MQ, Du LL, Klionsky DJ, Yip CK. Conserved and unique features of the fission yeast core Atg1 complex. Autophagy. 0. PMID 28976798 DOI: 10.1080/15548627.2017.1382782  0.329
2017 Wen X, Klionsky DJ. BRD4 is a newly characterized transcriptional regulator that represses autophagy and lysosomal function. Autophagy. 0. PMID 28837371 DOI: 10.1080/15548627.2017.1364334  0.416
2017 Feng Y, Klionsky DJ. Receptors make the pathway choice for protein degradation. Autophagy. 0. PMID 28796567 DOI: 10.1080/15548627.2017.1356553  0.428
2017 Feng Y, Klionsky DJ. Autophagy regulates DNA repair through SQSTM1/p62. Autophagy. 13: 995-996. PMID 28650265 DOI: 10.1080/15548627.2017.1317427  0.379
2017 Lahiri V, Klionsky DJ. Functional impairment in RHOT1/Miro1 degradation and mitophagy is a shared feature in familial and sporadic Parkinson disease. Autophagy. 0. PMID 28598233 DOI: 10.1080/15548627.2017.1327512  0.328
2017 Ariosa AR, Klionsky DJ. A novel role for a glycolytic pathway kinase in regulating autophagy has implications in cancer therapy. Autophagy. 0. PMID 28537472 DOI: 10.1080/15548627.2017.1321723  0.809
2017 Loos B, Klionsky DJ, Wong E. Augmenting brain metabolism to increase macro- and chaperone-mediated autophagy for decreasing neuronal proteotoxicity and aging. Progress in Neurobiology. PMID 28502807 DOI: 10.1016/J.Pneurobio.2017.05.001  0.347
2017 Yao Z, Liu X, Klionsky DJ. MitoPho8Δ60 Assay as a Tool to Quantitatively Measure Mitophagy Activity. Methods in Molecular Biology (Clifton, N.J.). PMID 28324486 DOI: 10.1007/7651_2017_12  0.44
2017 Yin Z, Klionsky DJ. HS1BP3 provides a novel mechanism of negative autophagy regulation through membrane lipids. Autophagy. 0. PMID 28323521 DOI: 10.1080/15548627.2017.1305534  0.43
2017 Lahiri V, Klionsky DJ. PHB2/prohibitin 2: An inner membrane mitophagy receptor. Cell Research. PMID 28220775 DOI: 10.1038/Cr.2017.23  0.385
2017 Geng J, Klionsky DJ. Direct quantification of autophagic flux by a single molecule-based probe. Autophagy. 0. PMID 28165866 DOI: 10.1080/15548627.2017.1280646  0.382
2017 Eapen VV, Waterman DP, Bernard A, Schiffmann N, Sayas E, Kamber R, Lemos B, Memisoglu G, Ang J, Mazella A, Chuartzman SG, Loewith RJ, Schuldiner M, Denic V, Klionsky DJ, et al. A pathway of targeted autophagy is induced by DNA damage in budding yeast. Proceedings of the National Academy of Sciences of the United States of America. PMID 28154131 DOI: 10.1073/Pnas.1614364114  0.45
2017 Popelka H, Klionsky DJ. The molecular mechanism of Atg13 function in autophagy induction: What is hidden behind the data? Autophagy. 0. PMID 28118060 DOI: 10.1080/15548627.2016.1277312  0.404
2017 Feng Y, Klionsky DJ. Autophagic membrane delivery through ATG9. Cell Research. PMID 28072404 DOI: 10.1038/Cr.2017.4  0.424
2016 Yin Z, Pascual C, Klionsky DJ. Autophagy: machinery and regulation. Microbial Cell (Graz, Austria). 3: 588-596. PMID 28357331 DOI: 10.15698/Mic2016.12.546  0.496
2016 Levine B, Klionsky DJ. Autophagy wins the 2016 Nobel Prize in Physiology or Medicine: Breakthroughs in baker's yeast fuel advances in biomedical research. Proceedings of the National Academy of Sciences of the United States of America. PMID 28039434 DOI: 10.1073/Pnas.1619876114  0.488
2016 Mao K, Klionsky DJ. Xenophagy: A battlefield between host and microbe, and a possible avenue for cancer treatment. Autophagy. 0. PMID 28026986 DOI: 10.1080/15548627.2016.1267075  0.353
2016 Sasaki T, Lian S, Khan A, Llop JR, Samuelson AV, Chen W, Klionsky DJ, Kishi S. Autolysosome biogenesis and developmental senescence are regulated by both Spns1 and v-ATPase. Autophagy. 0. PMID 27875093 DOI: 10.1080/15548627.2016.1256934  0.343
2016 Xu Z, Klionsky DJ. The AMPK-SKP2-CARM1 axis links nutrient sensing to transcriptional and epigenetic regulation of autophagy. Annals of Translational Medicine. 4: S7. PMID 27867975 DOI: 10.21037/Atm.2016.08.68  0.508
2016 Hu G, McQuiston T, Bernard A, Park YD, Qiu J, Vural A, Zhang N, Waterman SR, Blewett NH, Myers TG, Kehrl JH, Uzel G, Klionsky DJ, Williamson PR. Tor-dependent post-transcriptional regulation of autophagy: Implications for cancer therapeutics. Molecular & Cellular Oncology. 3: e1078923. PMID 27857968 DOI: 10.1080/23723556.2015.1078923  0.395
2016 Kang R, Zeng L, Xie Y, Yan Z, Zhou B, Cao L, Klionsky DJ, Tracey KJ, Li J, Wang H, Billiar TR, Jiang J, Tang D. A Novel PINK1- and PARK2-dependent Protective Neuroimmune Pathway in Lethal Sepsis. Autophagy. 0. PMID 27754761 DOI: 10.1080/15548627.2016.1239678  0.329
2016 Yao J, Jia L, Feathers K, Lin C, Khan NW, Klionsky DJ, Ferguson TA, Zacks DN. Autophagy-mediated catabolism of visual transduction proteins prevents retinal degeneration. Autophagy. 0. PMID 27753525 DOI: 10.1080/15548627.2016.1238553  0.394
2016 Yao Z, Klionsky DJ. An unconventional pathway for mitochondrial protein degradation. Autophagy. 0. PMID 27686525 DOI: 10.1080/15548627.2016.1235127  0.422
2016 Ariosa AR, Klionsky DJ. Autophagy core machinery: overcoming spatial barriers in neurons. Journal of Molecular Medicine (Berlin, Germany). PMID 27544281 DOI: 10.1007/S00109-016-1461-9  0.824
2016 Xu Z, Klionsky DJ. Autophagy promotes cell motility by driving focal adhesion turnover. Autophagy. 0. PMID 27483986 DOI: 10.1080/15548627.2016.1212791  0.423
2016 Saera-Vila A, Kish PE, Louie KW, Grzegorski SJ, Klionsky DJ, Kahana A. Autophagy Regulates Cytoplasmic Remodeling During Cell Reprogramming in a Zebrafish Model of Muscle Regeneration. Autophagy. 0. PMID 27467399 DOI: 10.1080/15548627.2016.1207015  0.411
2016 Grose C, Klionsky DJ. Alternative autophagy, brefeldin A and viral trafficking pathways. Autophagy. 0. PMID 27439673 DOI: 10.1080/15548627.2016.1203489  0.407
2016 Chakrabarti M, Klionsky DJ, Ray SK. miR-30e Blocks Autophagy and Acts Synergistically with Proanthocyanidin for Inhibition of AVEN and BIRC6 to Increase Apoptosis in Glioblastoma Stem Cells and Glioblastoma SNB19 Cells. Plos One. 11: e0158537. PMID 27388765 DOI: 10.1371/Journal.Pone.0158537  0.335
2016 Wen X, Klionsky DJ. The proteasome subunit RPN10 functions as a specific receptor for degradation of the 26S proteasome by macroautophagy in Arabidopsis. Autophagy. 1-2. PMID 27159576 DOI: 10.1080/15548627.2016.1171949  0.436
2016 Codogno P, Klionsky DJ. Opening new doors in autophagy research: Patrice Codogno. Autophagy. 1-6. PMID 27158743 DOI: 10.1080/15548627.2016.1170267  0.409
2016 Burmeister M, Lee JH, Schulman BA, Yapici Z, Tolun A, Juhasz G, Li JZ, Klionsky DJ. A role of autophagy in spinocerebellar ataxia-rare exception or general principle? Autophagy. 0. PMID 27105143 DOI: 10.1080/15548627.2016.1170266  0.357
2016 Feng Y, Klionsky DJ. Downregulation of autophagy through CUL3-KLHL20 mediated turnover of the ULK1 and PIK3C3/VPS34 complexes. Autophagy. 0. PMID 27096860 DOI: 10.1080/15548627.2016.1173802  0.456
2016 Feng Y, Backues SK, Baba M, Heo JM, Harper JW, Klionsky DJ. Phosphorylation of Atg9 regulates movement to the phagophore assembly site and the rate of autophagosome formation. Autophagy. 12: 648-58. PMID 27050455 DOI: 10.1080/15548627.2016.1157237  0.427
2016 Wen X, Klionsky DJ. Autophagy is a key factor in maintaining the regenerative capacity of muscle stem cells by promoting quiescence and preventing senescence. Autophagy. 12: 617-618. PMID 27050452 DOI: 10.1080/15548627.2016.1158373  0.385
2016 Klionsky DJ. Seeking punctuation clarity-that is, the proper use of the hyphen and dashes-for publishing in Autophagy. Autophagy. 12: 449-50. PMID 27046248 DOI: 10.1080/15548627.2016.1155016  0.336
2016 Liu X, Klionsky DJ. The Atg17-Atg31-Atg29 complex and Atg11 regulate autophagosome-vacuole fusion. Autophagy. 0. PMID 26986547 DOI: 10.1080/15548627.2016.1162364  0.495
2016 Wen X, Klionsky DJ. An overview of macroautophagy in yeast. Journal of Molecular Biology. PMID 26908221 DOI: 10.1016/J.Jmb.2016.02.021  0.477
2016 Klionsky DJ, Abdelmohsen K, Abe A, Abedin J, Abeliovich H, Arozena AA, Adachi H, Adams CM, Adams PD, Adeli K, Adhihetty PJ, Adler SG, Agam G, Agarwal R, Aghi MK, et al. Erratum to: Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) (Autophagy, 12, 1, 1-222, 10.1080/15548627.2015.1100356 Autophagy. 12: 443-443. PMID 26902590 DOI: 10.1080/15548627.2016.1147886  0.746
2016 Klionsky DJ. Stepping back from the guidelines: Where do we stand? Autophagy. 12: 223-224. PMID 26902583 DOI: 10.1080/15548627.2016.1139264  0.35
2016 Kim M, Sandford E, Gatica D, Qiu Y, Liu X, Zheng Y, Schulman BA, Xu J, Semple I, Ro SH, Kim B, Mavioglu RN, Tolun A, Jipa A, Takats S, ... ... Klionsky DJ, et al. Mutation in ATG5 reduces autophagy and leads to ataxia with developmental delay. Elife. 5. PMID 26812546 DOI: 10.7554/Elife.12245  0.383
2016 Klionsky DJ, Abdelmohsen K, Abe A, Abedin MJ, Abeliovich H, Acevedo Arozena A, Adachi H, Adams CM, Adams PD, Adeli K, Adhihetty PJ, Adler SG, Agam G, Agarwal R, Aghi MK, et al. Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy. 12: 1-222. PMID 26799652 DOI: 10.1080/15548627.2015.1100356  0.825
2016 Liu X, Mao K, Yu AY, Omairi-Nasser A, Austin J, Glick BS, Yip CK, Klionsky DJ. The Atg17-Atg31-Atg29 Complex Coordinates with Atg11 to Recruit the Vam7 SNARE and Mediate Autophagosome-Vacuole Fusion. Current Biology : Cb. PMID 26774783 DOI: 10.1016/J.Cub.2015.11.054  0.449
2016 Wang F, Gatica D, Ying ZX, Peterson LF, Bernard D, Saiya-Cork K, Wang S, Chang A, Kaminski MS, Phillips T, Klionsky D, Malek SN. Functional Analyses of V-Atpase Mutations in Follicular Lymphoma Blood. 128: 1762-1762. DOI: 10.1182/Blood.V128.22.1762.1762  0.36
2015 Hu G, McQuiston T, Bernard A, Park YD, Qiu J, Vural A, Zhang N, Waterman SR, Blewett NH, Myers TG, Kehrl JH, Uzel G, Klionsky DJ, Williamson PR. The role of transcriptional 'futile cycles' in autophagy and microbial pathogenesis. Microbial Cell (Graz, Austria). 2: 302-304. PMID 28357306 DOI: 10.15698/Mic2015.08.221  0.433
2015 Bernard A, Jin M, Xu Z, Klionsky DJ. A large-scale analysis of autophagy-related gene expression identifies new regulators of autophagy. Autophagy. 11: 2114-2122. PMID 26649943 DOI: 10.1080/15548627.2015.1099796  0.455
2015 Hu G, McQuiston T, Bernard A, Park YD, Qiu J, Vural A, Zhang N, Waterman SR, Blewett NH, Myers TG, Maraia RJ, Kehrl JH, Uzel G, Klionsky DJ, Williamson PR. TOR-dependent Post-transcriptional Regulation of Autophagy. Autophagy. 0. PMID 26569496 DOI: 10.1080/15548627.2015.1091142  0.483
2015 Delorme-Axford E, Klionsky DJ. A missing piece of the puzzle: Atg11 functions as a scaffold to activate Atg1 for selective autophagy. Autophagy. 11: 2139-41. PMID 26566077 DOI: 10.1080/15548627.2015.1116672  0.467
2015 Yao Z, Delorme-Axford E, Backues SK, Klionsky DJ. Atg41/Icy2 regulates autophagosome formation. Autophagy. 0. PMID 26565778 DOI: 10.1080/15548627.2015.1107692  0.552
2015 Popelka H, Klionsky DJ. Analysis of the native conformation of the LIR/AIM motif in the Atg8/LC3/GABARAP-binding proteins. Autophagy. 11: 2153-9. PMID 26565669 DOI: 10.1080/15548627.2015.1111503  0.334
2015 Jin M, Klionsky DJ. The amino acid transporter SLC38A9 regulates MTORC1 and autophagy. Autophagy. 11: 1709-10. PMID 26506891 DOI: 10.1080/15548627.2015.1084461  0.315
2015 Cheong H, Klionsky DJ. mTORC1 maintains metabolic balance. Cell Research. 25: 1085-6. PMID 26358187 DOI: 10.1038/Cr.2015.107  0.378
2015 Popelka H, Klionsky DJ. One step closer to understanding mammalian macroautophagy initiation: Interplay of 2 HORMA architectures in the ULK1 complex. Autophagy. 11: 1953-1955. PMID 26325630 DOI: 10.1080/15548627.2015.1087635  0.442
2015 Liu X, Klionsky DJ. The TP53INP2/DOR protein chaperones deacetylated nuclear LC3 to the cytoplasm to promote macroautophagy. Autophagy. 0. PMID 26213321 DOI: 10.1080/15548627.2015.1074373  0.42
2015 Popelka H, Klionsky DJ. Post-translationally-modified structures in the autophagy machinery: an integrative perspective. The Febs Journal. 282: 3474-88. PMID 26108642 DOI: 10.1111/Febs.13356  0.487
2015 Hu G, McQuiston T, Bernard A, Park YD, Qiu J, Vural A, Zhang N, Waterman SR, Blewett NH, Myers TG, Maraia RJ, Kehrl JH, Uzel G, Klionsky DJ, Williamson PR. A conserved mechanism of TOR-dependent RCK-mediated mRNA degradation regulates autophagy. Nature Cell Biology. PMID 26098573 DOI: 10.1038/Ncb3189  0.437
2015 Yao J, Jia L, Khan N, Lin C, Mitter SK, Boulton ME, Dunaief JL, Klionsky DJ, Guan JL, Thompson DA, Zacks DN. Deletion of autophagy inducer RB1CC1 results in degeneration of the retinal pigment epithelium. Autophagy. 11: 939-53. PMID 26075877 DOI: 10.1080/15548627.2015.1041699  0.56
2015 Gatica D, Klionsky DJ. TOS-sing aside the glycolytic role of HK2/hexokinase-II to activate autophagy. Autophagy. 11: 865-6. PMID 26075875 DOI: 10.1080/15548627.2015.1042196  0.372
2015 Yao Z, Klionsky DJ. The symphony of autophagy and calcium signaling. Autophagy. 0. PMID 26046237 DOI: 10.1080/15548627.2015.1058475  0.462
2015 Chew LH, Lu S, Liu X, Li FK, Yu AY, Klionsky DJ, Dong MQ, Yip CK. Molecular interactions of the Saccharomyces cerevisiae Atg1 complex provide insights into assembly and regulatory mechanisms. Autophagy. 11: 891-905. PMID 25998554 DOI: 10.1080/15548627.2015.1040972  0.367
2015 Bernard A, Klionsky DJ. Toward an understanding of autophagosome-lysosome fusion: The unsuspected role of ATG14. Autophagy. 11: 583-4. PMID 25920502 DOI: 10.1080/15548627.2015.1029220  0.486
2015 Ariosa AR, Klionsky DJ. Long-distance autophagy. Autophagy. 11: 193-4. PMID 25831012 DOI: 10.1080/15548627.2015.1009790  0.778
2015 Feng Y, Yao Z, Klionsky DJ. How to control self-digestion: transcriptional, post-transcriptional, and post-translational regulation of autophagy. Trends in Cell Biology. 25: 354-63. PMID 25759175 DOI: 10.1016/J.Tcb.2015.02.002  0.467
2015 Bernard A, Klionsky DJ. Rph1 mediates the nutrient-limitation signaling pathway leading to transcriptional activation of autophagy. Autophagy. 11: 718-9. PMID 25751780 DOI: 10.1080/15548627.2015.1018503  0.467
2015 Bernard A, Jin M, González-Rodríguez P, Füllgrabe J, Delorme-Axford E, Backues SK, Joseph B, Klionsky DJ. Rph1/KDM4 mediates nutrient-limitation signaling that leads to the transcriptional induction of autophagy. Current Biology : Cb. 25: 546-55. PMID 25660547 DOI: 10.1016/J.Cub.2014.12.049  0.486
2015 Gatica D, Chiong M, Lavandero S, Klionsky DJ. Molecular mechanisms of autophagy in the cardiovascular system. Circulation Research. 116: 456-67. PMID 25634969 DOI: 10.1161/Circresaha.114.303788  0.399
2015 Delorme-Axford E, Guimaraes RS, Reggiori F, Klionsky DJ. The yeast Saccharomyces cerevisiae: an overview of methods to study autophagy progression. Methods (San Diego, Calif.). 75: 3-12. PMID 25526918 DOI: 10.1016/J.Ymeth.2014.12.008  0.502
2015 Guimaraes RS, Delorme-Axford E, Klionsky DJ, Reggiori F. Assays for the biochemical and ultrastructural measurement of selective and nonselective types of autophagy in the yeast Saccharomyces cerevisiae. Methods (San Diego, Calif.). 75: 141-50. PMID 25484341 DOI: 10.1016/J.Ymeth.2014.11.023  0.489
2015 Xie Y, Kang R, Sun X, Zhong M, Huang J, Klionsky DJ, Tang D. Posttranslational modification of autophagy-related proteins in macroautophagy. Autophagy. 11: 28-45. PMID 25484070 DOI: 10.4161/15548627.2014.984267  0.498
2015 Backues SK, Orban DP, Bernard A, Singh K, Cao Y, Klionsky DJ. Atg23 and Atg27 act at the early stages of Atg9 trafficking in S. cerevisiae. Traffic (Copenhagen, Denmark). 16: 172-90. PMID 25385507 DOI: 10.1111/Tra.12240  0.466
2015 Galluzzi L, Bravo-San Pedro JM, Vitale I, Aaronson SA, Abrams JM, Adam D, Alnemri ES, Altucci L, Andrews D, Annicchiarico-Petruzzelli M, Baehrecke EH, Bazan NG, Bertrand MJ, Bianchi K, Blagosklonny MV, ... ... Klionsky DJ, et al. Essential versus accessory aspects of cell death: recommendations of the NCCD 2015. Cell Death and Differentiation. 22: 58-73. PMID 25236395 DOI: 10.1038/Cdd.2014.137  0.388
2015 Gramatikoff K, Nguyen A, Cuervo AM, Klionsky D. From misfolding to autophagy and disease F1000research. 6. DOI: 10.7490/F1000Research.1097460.1  0.326
2015 Liu X, Klionsky DJ. Autophagy and Immunity Autophagy, Infection, and the Immune Response. 1-17. DOI: 10.1002/9781118677551.ch1  0.325
2014 Orban DP, Klionsky DJ. CUET-ting edge research. Autophagy. 10: 2097-8. PMID 25590262 DOI: 10.4161/15548627.2014.995012  0.419
2014 Ochaba J, Lukacsovich T, Csikos G, Zheng S, Margulis J, Salazar L, Mao K, Lau AL, Yeung SY, Humbert S, Saudou F, Klionsky DJ, Finkbeiner S, Zeitlin SO, Marsh JL, et al. Potential function for the Huntingtin protein as a scaffold for selective autophagy. Proceedings of the National Academy of Sciences of the United States of America. 111: 16889-94. PMID 25385587 DOI: 10.1073/Pnas.1420103111  0.441
2014 An Z, Tassa A, Thomas C, Zhong R, Xiao G, Fotedar R, Tu BP, Klionsky DJ, Levine B. Autophagy is required for G₁/G₀ quiescence in response to nitrogen starvation in Saccharomyces cerevisiae. Autophagy. 10: 1702-11. PMID 25126732 DOI: 10.4161/Auto.32122  0.357
2014 Jin M, Klionsky DJ. Transcriptional regulation of ATG9 by the Pho23-Rpd3 complex modulates the frequency of autophagosome formation. Autophagy. 10: 1681-2. PMID 25046109 DOI: 10.4161/Auto.29641  0.437
2014 Klionsky DJ, Thorburn A. Clinical research and Autophagy. Autophagy. 10: 1357-8. PMID 24991837 DOI: 10.4161/Auto.29159  0.319
2014 Sasaki T, Lian S, Qi J, Bayliss PE, Carr CE, Johnson JL, Guha S, Kobler P, Catz SD, Gill M, Jia K, Klionsky DJ, Kishi S. Aberrant autolysosomal regulation is linked to the induction of embryonic senescence: differential roles of Beclin 1 and p53 in vertebrate Spns1 deficiency. Plos Genetics. 10: e1004409. PMID 24967584 DOI: 10.1371/Journal.Pgen.1004409  0.384
2014 Jin M, Klionsky DJ. Regulation of autophagy: modulation of the size and number of autophagosomes. Febs Letters. 588: 2457-63. PMID 24928445 DOI: 10.1016/J.Febslet.2014.06.015  0.44
2014 Jin M, He D, Backues SK, Freeberg MA, Liu X, Kim JK, Klionsky DJ. Transcriptional regulation by Pho23 modulates the frequency of autophagosome formation. Current Biology : Cb. 24: 1314-22. PMID 24881874 DOI: 10.1016/J.Cub.2014.04.048  0.446
2014 Popelka H, Uversky VN, Klionsky DJ. Identification of Atg3 as an intrinsically disordered polypeptide yields insights into the molecular dynamics of autophagy-related proteins in yeast. Autophagy. 10: 1093-104. PMID 24879155 DOI: 10.4161/Auto.28616  0.406
2014 Klionsky DJ, Schulman BA. Dynamic regulation of macroautophagy by distinctive ubiquitin-like proteins. Nature Structural & Molecular Biology. 21: 336-45. PMID 24699082 DOI: 10.1038/Nsmb.2787  0.501
2014 Lee WW, Klionsky DJ. Macromusophagy: A solo piano musical representation of macroautophagy. Autophagy. 10: 721-35. PMID 24675240 DOI: 10.4161/Auto.27965  0.314
2014 Klionsky DJ, Eskelinen EL, Deretic V. Autophagosomes, phagosomes, autolysosomes, phagolysosomes, autophagolysosomes... wait, I'm confused. Autophagy. 10: 549-51. PMID 24657946 DOI: 10.4161/Auto.28448  0.34
2014 Jin N, Mao K, Jin Y, Tevzadze G, Kauffman EJ, Park S, Bridges D, Loewith R, Saltiel AR, Klionsky DJ, Weisman LS. Roles for PI(3,5)P2 in nutrient sensing through TORC1. Molecular Biology of the Cell. 25: 1171-85. PMID 24478451 DOI: 10.1091/Mbc.E14-01-0021  0.368
2014 Mao K, Liu X, Feng Y, Klionsky DJ. The progression of peroxisomal degradation through autophagy requires peroxisomal division. Autophagy. 10: 652-61. PMID 24451165 DOI: 10.4161/Auto.27852  0.457
2014 Miller-Fleming L, Cheong H, Antas P, Klionsky DJ. Detection of Saccharomyces cerevisiae Atg13 by western blot. Autophagy. 10: 514-7. PMID 24430166 DOI: 10.4161/Auto.27707  0.404
2014 Feng Y, He D, Yao Z, Klionsky DJ. The machinery of macroautophagy. Cell Research. 24: 24-41. PMID 24366339 DOI: 10.1038/Cr.2013.168  0.526
2014 Klionsky DJ, Eskelinen EL. The vacuole versus the lysosome: when size matters. Autophagy. 10: 185-7. PMID 24343261 DOI: 10.4161/Auto.27367  0.305
2014 Füllgrabe J, Klionsky DJ, Joseph B. The return of the nucleus: transcriptional and epigenetic control of autophagy. Nature Reviews. Molecular Cell Biology. 15: 65-74. PMID 24326622 DOI: 10.1038/Nrm3716  0.366
2014 Varga M, Sass M, Papp D, Takács-Vellai K, Kobolak J, Dinnyés A, Klionsky DJ, Vellai T. Autophagy is required for zebrafish caudal fin regeneration Cell Death and Differentiation. 21: 547-556. PMID 24317199 DOI: 10.1038/Cdd.2013.175  0.419
2014 Belaid A, Ndiaye PD, Cerezo M, Cailleteau L, Brest P, Klionsky DJ, Carle GF, Hofman P, Mograbi B. Autophagy and SQSTM1 on the RHOA(d) again: emerging roles of autophagy in the degradation of signaling proteins. Autophagy. 10: 201-8. PMID 24300375 DOI: 10.4161/Auto.27198  0.456
2014 Backues SK, Chen D, Ruan J, Xie Z, Klionsky DJ. Estimating the size and number of autophagic bodies by electron microscopy. Autophagy. 10: 155-64. PMID 24270884 DOI: 10.4161/Auto.26856  0.32
2014 Bernard A, Klionsky DJ. Defining the membrane precursor supporting the nucleation of the phagophore. Autophagy. 10: 1-2. PMID 24257021 DOI: 10.4161/Auto.27242  0.328
2014 Kyrychenko VO, Nagibin VS, Tumanovska LV, Pashevin DO, Gurianova VL, Moibenko AA, Dosenko VE, Klionsky DJ. Knockdown of PSMB7 induces autophagy in cardiomyocyte cultures: possible role in endoplasmic reticulum stress. Pathobiology : Journal of Immunopathology, Molecular and Cellular Biology. 81: 8-14. PMID 23969338 DOI: 10.1159/000350704  0.414
2014 Parzych KR, Klionsky DJ. An overview of autophagy: morphology, mechanism, and regulation. Antioxidants & Redox Signaling. 20: 460-73. PMID 23725295 DOI: 10.1089/Ars.2013.5371  0.491
2014 Wang K, Klionsky DJ. Molecular Process and Physiological Significance of Mitophagy Autophagy: Cancer, Other Pathologies, Inflammation, Immunity, Infection, and Aging. 4: 49-63. DOI: 10.1016/B978-0-12-405528-5.00002-X  0.337
2013 Mao K, Chew LH, Yip CK, Klionsky DJ. The role of Atg29 phosphorylation in PAS assembly. Autophagy. 9: 2178-9. PMID 24141181 DOI: 10.4161/Auto.26740  0.426
2013 Wang K, Jin M, Liu X, Klionsky DJ. Proteolytic processing of Atg32 by the mitochondrial i-AAA protease Yme1 regulates mitophagy. Autophagy. 9: 1828-36. PMID 24025448 DOI: 10.4161/Auto.26281  0.442
2013 Mao K, Klionsky DJ. Mitochondrial fission facilitates mitophagy in Saccharomyces cerevisiae. Autophagy. 9: 1900-1. PMID 24025250 DOI: 10.4161/Auto.25804  0.386
2013 Mao K, Klionsky DJ. Participation of mitochondrial fission during mitophagy. Cell Cycle (Georgetown, Tex.). 12: 3131-2. PMID 24013417 DOI: 10.4161/Cc.26352  0.413
2013 Belaid A, Ndiaye PD, Klionsky DJ, Hofman P, Mograbi B. Signalphagy: scheduled signal termination by macroautophagy. Autophagy. 9: 1629-30. PMID 24004837 DOI: 10.4161/Auto.25880  0.422
2013 Chew LH, Setiaputra D, Klionsky DJ, Yip CK. Structural characterization of the Saccharomyces cerevisiae autophagy regulatory complex Atg17-Atg31-Atg29. Autophagy. 9: 1467-74. PMID 23939028 DOI: 10.4161/Auto.25687  0.361
2013 Füllgrabe J, Klionsky DJ, Joseph B. Histone post-translational modifications regulate autophagy flux and outcome. Autophagy. 9: 1621-3. PMID 23934085 DOI: 10.4161/Auto.25803  0.457
2013 Füllgrabe J, Lynch-Day MA, Heldring N, Li W, Struijk RB, Ma Q, Hermanson O, Rosenfeld MG, Klionsky DJ, Joseph B. The histone H4 lysine 16 acetyltransferase hMOF regulates the outcome of autophagy. Nature. 500: 468-71. PMID 23863932 DOI: 10.1038/Nature12313  0.412
2013 Mao K, Chew LH, Inoue-Aono Y, Cheong H, Nair U, Popelka H, Yip CK, Klionsky DJ. Atg29 phosphorylation regulates coordination of the Atg17-Atg31-Atg29 complex with the Atg11 scaffold during autophagy initiation. Proceedings of the National Academy of Sciences of the United States of America. 110: E2875-84. PMID 23858448 DOI: 10.1073/Pnas.1300064110  0.489
2013 Loos B, Engelbrecht AM, Lockshin RA, Klionsky DJ, Zakeri Z. The variability of autophagy and cell death susceptibility: Unanswered questions. Autophagy. 9: 1270-85. PMID 23846383 DOI: 10.4161/Auto.25560  0.428
2013 Mao K, Wang K, Liu X, Klionsky DJ. The scaffold protein Atg11 recruits fission machinery to drive selective mitochondria degradation by autophagy. Developmental Cell. 26: 9-18. PMID 23810512 DOI: 10.1016/J.Devcel.2013.05.024  0.402
2013 Klionsky DJ, Codogno P. The mechanism and physiological function of macroautophagy. Journal of Innate Immunity. 5: 427-33. PMID 23774579 DOI: 10.1159/000351979  0.498
2013 Reggiori F, Klionsky DJ. Autophagic processes in yeast: mechanism, machinery and regulation. Genetics. 194: 341-61. PMID 23733851 DOI: 10.1534/Genetics.112.149013  0.528
2013 Belaid A, Cerezo M, Chargui A, Corcelle-Termeau E, Pedeutour F, Giuliano S, Ilie M, Rubera I, Tauc M, Barale S, Bertolotto C, Brest P, Vouret-Craviari V, Klionsky DJ, Carle GF, et al. Autophagy plays a critical role in the degradation of active RHOA, the control of cell cytokinesis, and genomic stability. Cancer Research. 73: 4311-22. PMID 23704209 DOI: 10.1158/0008-5472.Can-12-4142  0.432
2013 Bernard A, Klionsky DJ. Autophagosome formation: tracing the source. Developmental Cell. 25: 116-7. PMID 23639440 DOI: 10.1016/J.Devcel.2013.04.004  0.359
2013 Bernard A, Popelka H, Klionsky DJ. A unique hairpin-type tail-anchored SNARE starts to solve a long-time puzzle. Autophagy. 9: 813-4. PMID 23575358 DOI: 10.4161/Auto.24359  0.428
2013 Klionsky DJ. Ancient autophagy. Autophagy. 9: 445-6. PMID 23388466 DOI: 10.4161/auto.23907  0.318
2013 Kaiser SE, Qiu Y, Coats JE, Mao K, Klionsky DJ, Schulman BA. Structures of Atg7-Atg3 and Atg7-Atg10 reveal noncanonical mechanisms of E2 recruitment by the autophagy E1. Autophagy. 9: 778-80. PMID 23388412 DOI: 10.4161/Auto.23644  0.32
2013 Jin M, Liu X, Klionsky DJ. SnapShot: Selective autophagy. Cell. 152: 368-368.e2. PMID 23332767 DOI: 10.1016/J.Cell.2013.01.004  0.471
2013 Deffieu M, Bhatia-Kiššová I, Salin B, Klionsky DJ, Pinson B, Manon S, Camougrand N. Increased levels of reduced cytochrome b and mitophagy components are required to trigger nonspecific autophagy following induced mitochondrial dysfunction. Journal of Cell Science. 126: 415-26. PMID 23230142 DOI: 10.1242/Jcs.103713  0.41
2013 Klionsky DJ. Why just eat in, when you can also eat out? Autophagy. 9: 119. PMID 23159909 DOI: 10.4161/Auto.22915  0.488
2013 Klionsky DJ. The intense gravitational attraction of autophagy Autophagy. 9: 1127-1128. DOI: 10.4161/Auto.25572  0.345
2013 Belaid A, N'diaye PD, Cerezo M, Brest P, Klionsky DJ, Carle GF, Hofman P, Mograbi B. Abstract A224: Autophagy and SQSTM1 on the RHOA(d) again. Molecular Cancer Therapeutics. 12. DOI: 10.1158/1535-7163.Targ-13-A224  0.436
2012 Kaiser SE, Mao K, Taherbhoy AM, Yu S, Olszewski JL, Duda DM, Kurinov I, Deng A, Fenn TD, Klionsky DJ, Schulman BA. Noncanonical E2 recruitment by the autophagy E1 revealed by Atg7-Atg3 and Atg7-Atg10 structures. Nature Structural & Molecular Biology. 19: 1242-9. PMID 23142976 DOI: 10.1038/Nsmb.2415  0.302
2012 Wang K, Yang Z, Liu X, Mao K, Nair U, Klionsky DJ. Phosphatidylinositol 4-kinases are required for autophagic membrane trafficking. The Journal of Biological Chemistry. 287: 37964-72. PMID 22977244 DOI: 10.1074/Jbc.M112.371591  0.383
2012 Klionsky DJ, Abdalla FC, Abeliovich H, Abraham RT, Acevedo-Arozena A, Adeli K, Agholme L, Agnello M, Agostinis P, Aguirre-Ghiso JA, Ahn HJ, Ait-Mohamed O, Ait-Si-Ali S, Akematsu T, Akira S, et al. Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy. 8: 445-544. PMID 22966490 DOI: 10.4161/Auto.19496  0.765
2012 Backues SK, Lynch-Day MA, Klionsky DJ. The Ume6-Sin3-Rpd3 complex regulates ATG8 transcription to control autophagosome size. Autophagy. 8: 1835-6. PMID 22960621 DOI: 10.4161/Auto.21845  0.397
2012 Klionsky DJ. Look people, "Atg" is an abbreviation for "autophagy-related." That's it. Autophagy. 8: 1281-2. PMID 22889836 DOI: 10.4161/Auto.21812  0.397
2012 Mijaljica D, Nazarko TY, Brumell JH, Huang WP, Komatsu M, Prescott M, Simonsen A, Yamamoto A, Zhang H, Klionsky DJ, Devenish RJ. Receptor protein complexes are in control of autophagy. Autophagy. 8: 1701-5. PMID 22874568 DOI: 10.4161/Auto.21332  0.384
2012 Klionsky DJ. A human autophagy interaction network. Autophagy. 8: 439-41. PMID 22781101 DOI: 10.4161/Auto.19926  0.306
2012 Cebollero E, van der Vaart A, Zhao M, Rieter E, Klionsky DJ, Helms JB, Reggiori F. Phosphatidylinositol-3-phosphate clearance plays a key role in autophagosome completion. Current Biology : Cb. 22: 1545-53. PMID 22771041 DOI: 10.1016/J.Cub.2012.06.029  0.489
2012 Klionsky DJ, Bergamini E. Searching for the fountain of autophagy-dependent youth: Ettore Bergamini Autophagy. 8: 1169-1174. PMID 22739129 DOI: 10.4161/Auto.20788  0.315
2012 Bartholomew CR, Suzuki T, Du Z, Backues SK, Jin M, Lynch-Day MA, Umekawa M, Kamath A, Zhao M, Xie Z, Inoki K, Klionsky DJ. Ume6 transcription factor is part of a signaling cascade that regulates autophagy. Proceedings of the National Academy of Sciences of the United States of America. 109: 11206-10. PMID 22733735 DOI: 10.1073/Pnas.1200313109  0.53
2012 Backues SK, Klionsky DJ. Atg11: a Rab-dependent, coiled-coil membrane protein that acts as a tether for autophagy. Autophagy. 8: 1275-8. PMID 22717525 DOI: 10.4161/Auto.21153  0.439
2012 Yen WL, Klionsky DJ. Proteinase protection of prApe1 as a tool to monitor Cvt vesicle/autophagosome biogenesis. Autophagy. 8: 1245-9. PMID 22653261 DOI: 10.4161/Auto.20916  0.443
2012 Devenish RJ, Klionsky DJ. Autophagy: mechanism and physiological relevance 'brewed' from yeast studies. Frontiers in Bioscience (Scholar Edition). 4: 1354-63. PMID 22652877 DOI: 10.2741/S337  0.437
2012 Yu ZQ, Ni T, Hong B, Wang HY, Jiang FJ, Zou S, Chen Y, Zheng XL, Klionsky DJ, Liang Y, Xie Z. Dual roles of Atg8-PE deconjugation by Atg4 in autophagy. Autophagy. 8: 883-92. PMID 22652539 DOI: 10.4161/Auto.19652  0.448
2012 Nair U, Yen WL, Mari M, Cao Y, Xie Z, Baba M, Reggiori F, Klionsky DJ. A role for Atg8-PE deconjugation in autophagosome biogenesis. Autophagy. 8: 780-93. PMID 22622160 DOI: 10.4161/Auto.19385  0.491
2012 Shimada Y, Klionsky DJ. Autophagy contributes to lysosomal storage disorders. Autophagy. 8: 715-6. PMID 22617443 DOI: 10.4161/Auto.19920  0.412
2012 Umekawa M, Klionsky DJ. The Cytoplasm-to-Vacuole Targeting Pathway: A Historical Perspective. International Journal of Cell Biology. 2012: 142634. PMID 22481942 DOI: 10.1155/2012/142634  0.506
2012 Lynch-Day MA, Mao K, Wang K, Zhao M, Klionsky DJ. The role of autophagy in Parkinson's disease. Cold Spring Harbor Perspectives in Medicine. 2: a009357. PMID 22474616 DOI: 10.1101/Cshperspect.A009357  0.301
2012 Umekawa M, Klionsky DJ. Ksp1 kinase regulates autophagy via the target of rapamycin complex 1 (TORC1) pathway Journal of Biological Chemistry. 287: 16300-16310. PMID 22447937 DOI: 10.1074/Jbc.M112.344952  0.482
2012 Klionsky DJ, Hurley JH. Self-eating with your fingers. Cell Research. 22: 783-5. PMID 22410794 DOI: 10.1038/Cr.2012.39  0.495
2012 Nair U, Thumm M, Klionsky DJ, Krick R. GFP-Atg8 protease protection as a tool to monitor autophagosome biogenesis. Autophagy. 7: 1546-50. PMID 22108003 DOI: 10.4161/Auto.7.12.18424  0.437
2012 Klionsky DJ. Nonclassical protein sorting. Trends in Cell Biology. 7: 225-9. PMID 17708950 DOI: 10.1016/S0962-8924(97)01050-7  0.44
2011 Nair U, Klionsky DJ. Activation of autophagy is required for muscle homeostasis during physical exercise Autophagy. 7: 1405-1406. PMID 22082869 DOI: 10.4161/Auto.7.12.18315  0.309
2011 Bass A, Sauer D, Klionsky DJ. A PCR analysis of the ubiquitin-like conjugation systems in macroautophagy. Autophagy. 7: 1410-4. PMID 22024756 DOI: 10.4161/Auto.7.12.16991  0.422
2011 Mao K, Klionsky DJ. MAPKs regulate mitophagy in Saccharomyces cerevisiae. Autophagy. 7: 1564-5. PMID 22024747 DOI: 10.4161/Auto.7.12.17971  0.492
2011 Nair U, Klionsky DJ. Autophagosome biogenesis requires SNAREs Autophagy. 7: 1570-1572. PMID 22024744 DOI: 10.4161/Auto.7.12.18001  0.335
2011 Klionsky DJ, Baehrecke EH, Brumell JH, Chu CT, Codogno P, Cuervo AM, Debnath J, Deretic V, Elazar Z, Eskelinen EL, Finkbeiner S, Fueyo-Margareto J, Gewirtz D, Jäättelä M, Kroemer G, et al. A comprehensive glossary of autophagy-related molecules and processes (2nd edition). Autophagy. 7: 1273-94. PMID 21997368 DOI: 10.4161/Auto.7.11.17661  0.462
2011 Klionsky DJ. For the last time, it is GFP-Atg8, not Atg8-GFP (and the same goes for LC3) Autophagy. 7: 1093-1094. PMID 21993240 DOI: 10.4161/Auto.7.10.15492  0.389
2011 Nair U, Jotwani A, Geng J, Gammoh N, Richerson D, Yen WL, Griffith J, Nag S, Wang K, Moss T, Baba M, McNew JA, Jiang X, Reggiori F, Melia TJ, ... Klionsky DJ, et al. SNARE proteins are required for macroautophagy. Cell. 146: 290-302. PMID 21784249 DOI: 10.1016/J.Cell.2011.06.022  0.439
2011 Taylor RW, Qi JY, Talaga AK, Ma TP, Pan L, Bartholomew CR, Klionsky DJ, Moens CB, Gamse JT. Asymmetric inhibition of Ulk2 causes left-right differences in habenular neuropil formation. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 9869-78. PMID 21734278 DOI: 10.1523/Jneurosci.0435-11.2011  0.36
2011 Klionsky DJ, Nemchenko A. There is more to autophagy than induction: Regulating the roller coaster Autophagy. 7: 801-802. PMID 21636971 DOI: 10.4161/Auto.7.8.16609  0.453
2011 Mao K, Wang K, Zhao M, Xu T, Klionsky DJ. Two MAPK-signaling pathways are required for mitophagy in Saccharomyces cerevisiae. The Journal of Cell Biology. 193: 755-67. PMID 21576396 DOI: 10.1083/Jcb.201102092  0.501
2011 Nyfeler B, Bergman P, Triantafellow E, Wilson CJ, Zhu Y, Radetich B, Finan PM, Klionsky DJ, Murphy LO. Relieving autophagy and 4EBP1 from rapamycin resistance. Molecular and Cellular Biology. 31: 2867-76. PMID 21576371 DOI: 10.1128/Mcb.05430-11  0.423
2011 Mao K, Klionsky DJ. AMPK activates autophagy by phosphorylating ULK1. Circulation Research. 108: 787-8. PMID 21454792 DOI: 10.1161/Res.0B013E3182194C29  0.466
2011 Klionsky DJ, Meijer AJ. From the urea cycle to autophagy: Alfred J. Meijer Autophagy. 7: 805-813. PMID 21389787 DOI: 10.4161/Auto.7.8.15192  0.453
2011 Yuga M, Gomi K, Klionsky DJ, Shintani T. Aspartyl aminopeptidase is imported from the cytoplasm to the vacuole by selective autophagy in Saccharomyces cerevisiae. The Journal of Biological Chemistry. 286: 13704-13. PMID 21343297 DOI: 10.1074/Jbc.M110.173906  0.425
2011 Klionsky DJ. The autophagosome is overrated! Autophagy. 7: 353-354. PMID 21258205 DOI: 10.4161/Auto.7.4.14730  0.47
2011 Wang K, Klionsky DJ. Mitochondria removal by autophagy Autophagy. 7: 297-300. PMID 21252623 DOI: 10.4161/Auto.7.3.14502  0.433
2011 Kanki T, Klionsky DJ, Okamoto K. Mitochondria autophagy in yeast. Antioxidants & Redox Signaling. 14: 1989-2001. PMID 21194379 DOI: 10.1089/Ars.2010.3762  0.396
2011 Chen Y, Klionsky DJ. The regulation of autophagy - Unanswered questions Journal of Cell Science. 124: 161-170. PMID 21187343 DOI: 10.1242/Jcs.064576  0.506
2011 Thumm M, Klionsky DJ. New thoughts regarding Atg8 and ubiquitination Autophagy. 7: 125-126. PMID 21160277 DOI: 10.4161/Auto.7.2.14428  0.462
2011 Shahnazari S, Namolovan A, Klionsky DJ, Brumell JH. A role for diacylglycerol in antibacterial autophagy. Autophagy. 7: 331-3. PMID 21079417 DOI: 10.4161/Auto.7.3.14045  0.464
2011 Huang J, Birmingham CL, Shahnazari S, Shiu J, Zheng YT, Smith AC, Campellone KG, Heo WD, Gruenheid S, Meyer T, Welch MD, Ktistakis NT, Kim PK, Klionsky DJ, Brumell JH. Antibacterial autophagy occurs at PI(3)P-enriched domains of the endoplasmic reticulum and requires Rab1 GTPase. Autophagy. 7: 17-26. PMID 20980813 DOI: 10.4161/Auto.7.1.13840  0.468
2011 Backues SK, Klionsky DJ. Autophagy gets in on the regulatory act. Journal of Molecular Cell Biology. 3: 76-7. PMID 20947614 DOI: 10.1093/Jmcb/Mjq033  0.432
2011 Zhao M, Klionsky DJ. AMPK-dependent phosphorylation of ULK1 induces autophagy Cell Metabolism. 13: 119-120. DOI: 10.1016/J.Cmet.2011.01.009  0.392
2010 Yang Z, Klionsky DJ. Eaten alive: A history of macroautophagy Nature Cell Biology. 12: 814-822. PMID 20811353 DOI: 10.1038/Ncb0910-814  0.449
2010 Geng J, Klionsky DJ. The Golgi as a potential membrane source for autophagy Autophagy. 6: 950-951. PMID 20729630 DOI: 10.4161/Auto.6.7.13009  0.403
2010 Shahnazari S, Yen WL, Birmingham CL, Shiu J, Namolovan A, Zheng YT, Nakayama K, Klionsky DJ, Brumell JH. A diacylglycerol-dependent signaling pathway contributes to regulation of antibacterial autophagy. Cell Host & Microbe. 8: 137-46. PMID 20674539 DOI: 10.1016/J.Chom.2010.07.002  0.493
2010 Munakata N, Klionsky DJ. "Autophagy suite": Atg9 cycling in the cytoplasm to vacuole targeting pathway Autophagy. 6: 679-685. PMID 20543572 DOI: 10.4161/Auto.6.6.12396  0.49
2010 He C, Klionsky DJ. Analyzing autophagy in zebrafish Autophagy. 6: 642-644. PMID 20495344 DOI: 10.4161/Auto.6.5.12092  0.329
2010 Kanki T, Klionsky DJ. The molecular mechanism of mitochondria autophagy in yeast: MicroReview Molecular Microbiology. 75: 795-800. PMID 20487284 DOI: 10.1111/J.1365-2958.2009.07035.X  0.433
2010 Klionsky DJ, Codogno P, Cuervo AM, Deretic V, Elazar Z, Fueyo-Margareto J, Gewirtz DA, Kroemer G, Levine B, Mizushima N, Rubinsztein DC, Thumm M, Tooze SA. A comprehensive glossary of autophagy-related molecules and processes. Autophagy. 6: 438-48. PMID 20484971 DOI: 10.4161/Auto.6.4.12244  0.454
2010 Geng J, Nair U, Yasumura-Yorimitsu K, Klionsky DJ. Post-Golgi Sec proteins are required for autophagy in Saccharomyces cerevisiae. Molecular Biology of the Cell. 21: 2257-69. PMID 20444978 DOI: 10.1091/Mbc.E09-11-0969  0.508
2010 Klionsky DJ. The molecular machinery of autophagy and its role in physiology and disease Seminars in Cell and Developmental Biology. 21: 663. PMID 20430106 DOI: 10.1016/J.Semcdb.2010.04.005  0.361
2010 Yang Z, Geng J, Yen WL, Wang K, Klionsky DJ. Positive or negative roles of different cyclin-dependent kinase Pho85-cyclin complexes orchestrate induction of autophagy in Saccharomyces cerevisiae. Molecular Cell. 38: 250-64. PMID 20417603 DOI: 10.1016/J.Molcel.2010.02.033  0.443
2010 Lynch-Day MA, Bhandari D, Menon S, Huang J, Cai H, Bartholomew CR, Brumell JH, Ferro-Novick S, Klionsky DJ. Trs85 directs a Ypt1 GEF, TRAPPIII, to the phagophore to promote autophagy. Proceedings of the National Academy of Sciences of the United States of America. 107: 7811-6. PMID 20375281 DOI: 10.1073/Pnas.1000063107  0.466
2010 Kanki T, Wang K, Klionsky DJ. A genomic screen for yeast mutants defective in mitophagy. Autophagy. 6: 278-80. PMID 20364111 DOI: 10.4161/Auto.6.2.10901  0.372
2010 Inoue Y, Klionsky DJ. Regulation of macroautophagy in Saccharomyces cerevisiae Seminars in Cell and Developmental Biology. 21: 664-670. PMID 20359542 DOI: 10.1016/J.Semcdb.2010.03.009  0.521
2010 Nair U, Cao Y, Xie Z, Klionsky DJ. Roles of the lipid-binding motifs of Atg18 and Atg21 in the cytoplasm to vacuole targeting pathway and autophagy. The Journal of Biological Chemistry. 285: 11476-88. PMID 20154084 DOI: 10.1074/Jbc.M109.080374  0.453
2010 Lynch-Day MA, Klionsky DJ. The Cvt pathway as a model for selective autophagy. Febs Letters. 584: 1359-66. PMID 20146925 DOI: 10.1016/J.Febslet.2010.02.013  0.457
2010 Geng J, Klionsky DJ. Determining Atg protein stoichiometry at the phagophore assembly site by fluorescence microscopy Autophagy. 6: 144-147. PMID 20131413 DOI: 10.4161/Auto.6.1.10249  0.467
2010 Dice JF, Klionsky DJ. Artophagy: The art of autophagy - Macroautophagy Autophagy. 6: 320-321. PMID 20118653 DOI: 10.4161/Auto.6.3.11263  0.313
2010 Yen WL, Shintani T, Nair U, Cao Y, Richardson BC, Li Z, Hughson FM, Baba M, Klionsky DJ. The conserved oligomeric Golgi complex is involved in double-membrane vesicle formation during autophagy. The Journal of Cell Biology. 188: 101-14. PMID 20065092 DOI: 10.1083/Jcb.200904075  0.452
2010 Yang Z, Klionsky DJ. Mammalian autophagy: Core molecular machinery and signaling regulation Current Opinion in Cell Biology. 22: 124-131. PMID 20034776 DOI: 10.1016/J.Ceb.2009.11.014  0.496
2010 Thevissen K, Yen WL, Carmona-Gutierrez D, Idkowiak-Baldys J, Aerts AM, François IE, Madeo F, Klionsky DJ, Hannun YA, Cammue BP. Skn1 and Ipt1 negatively regulate autophagy in Saccharomyces cerevisiae. Fems Microbiology Letters. 303: 163-8. PMID 20030721 DOI: 10.1111/J.1574-6968.2009.01869.X  0.405
2010 Vellai T, Klionsky DJ. A second report from the EMBO conference on autophagy: Mechanism, regulation and selectivity of autophagy Autophagy. 6: 197-198. PMID 20026910 DOI: 10.4161/Auto.6.1.10819  0.469
2010 Goodsell DS, Klionsky DJ. Artophagy: The art of autophagy - The Cvt pathway Autophagy. 6: 3-6. PMID 20023390 DOI: 10.4161/Auto.6.1.10812  0.411
2010 Klionsky DJ. An autophagy glossary Autophagy. 6: 437. DOI: 10.4161/Auto.6.4.12243  0.425
2010 Klionsky DJ. The Autophagy Connection Developmental Cell. 19: 11-12. DOI: 10.1016/J.Devcel.2010.07.005  0.332
2009 Klionsky DJ. A report from the EMBO conference on autophagy Autophagy. 5: 1235-1239. PMID 19901526 DOI: 10.4161/Auto.5.8.10480  0.304
2009 Kanki T, Kang D, Klionsky DJ. Monitoring mitophagy in yeast: the Om45-GFP processing assay. Autophagy. 5: 1186-9. PMID 19806021 DOI: 10.4161/Auto.5.8.9854  0.466
2009 Yang Z, Klionsky DJ. An overview of the molecular mechanism of autophagy Current Topics in Microbiology and Immunology. 335: 1-32. PMID 19802558 DOI: 10.1007/978-3-642-00302-8_1  0.485
2009 Kanki T, Wang K, Baba M, Bartholomew CR, Lynch-Day MA, Du Z, Geng J, Mao K, Yang Z, Yen WL, Klionsky DJ. A genomic screen for yeast mutants defective in selective mitochondria autophagy. Molecular Biology of the Cell. 20: 4730-8. PMID 19793921 DOI: 10.1091/Mbc.E09-03-0225  0.389
2009 Kanki T, Klionsky DJ. Atg32 is a tag for mitochondria degradation in yeast Autophagy. 5: 1201-1202. PMID 19736522 DOI: 10.4161/Auto.5.8.9747  0.49
2009 Vellai T, Takács-Vellai K, Sass M, Klionsky DJ. The regulation of aging: does autophagy underlie longevity? Trends in Cell Biology. 19: 487-94. PMID 19726187 DOI: 10.1016/J.Tcb.2009.07.007  0.445
2009 Monastyrska I, Rieter E, Klionsky DJ, Reggiori F. Multiple roles of the cytoskeleton in autophagy. Biological Reviews of the Cambridge Philosophical Society. 84: 431-48. PMID 19659885 DOI: 10.1111/J.1469-185X.2009.00082.X  0.514
2009 He C, Klionsky DJ. Regulation mechanisms and signaling pathways of autophagy Annual Review of Genetics. 43: 67-93. PMID 19653858 DOI: 10.1146/Annurev-Genet-102808-114910  0.493
2009 Kanki T, Klionsky DJ. Mitochondrial abnormalities drive cell death in Wolfram syndrome 2 Cell Research. 19: 922-923. PMID 19648948 DOI: 10.1038/Cr.2009.94  0.359
2009 Kanki T, Wang K, Cao Y, Baba M, Klionsky DJ. Atg32 is a mitochondrial protein that confers selectivity during mitophagy. Developmental Cell. 17: 98-109. PMID 19619495 DOI: 10.1016/J.Devcel.2009.06.014  0.427
2009 Klionsky DJ, Dice JF. Chaperone-mediated autophagy: The heretofore untold story of J. Fred "Paulo" Dice Autophagy. 5: 1079-1084. PMID 19617700 DOI: 10.4161/Auto.5.8.9476  0.411
2009 Rubinsztein DC, Cuervo AM, Ravikumar B, Sarkar S, Korolchuk V, Kaushik S, Klionsky DJ. In search of an "autophagomometer". Autophagy. 5: 585-9. PMID 19411822 DOI: 10.4161/Auto.5.5.8823  0.383
2009 Galluzzi L, Aaronson SA, Abrams J, Alnemri ES, Andrews DW, Baehrecke EH, Bazan NG, Blagosklonny MV, Blomgren K, Borner C, Bredesen DE, Brenner C, Castedo M, Cidlowski JA, Ciechanover A, ... ... Klionsky DJ, et al. Guidelines for the use and interpretation of assays for monitoring cell death in higher eukaryotes. Cell Death and Differentiation. 16: 1093-107. PMID 19373242 DOI: 10.1038/Cdd.2009.44  0.343
2009 Klionsky DJ. Crohn's disease, autophagy, and the paneth cell New England Journal of Medicine. 360: 1785-1786. PMID 19369659 DOI: 10.1056/Nejmcibr0810347  0.323
2009 Cao Y, Nair U, Yasumura-Yorimitsu K, Klionsky DJ. A multiple ATG gene knockout strain for yeast two-hybrid analysis. Autophagy. 5: 699-705. PMID 19337029 DOI: 10.4161/Auto.5.5.8382  0.352
2009 Yorimitsu T, He C, Wang K, Klionsky DJ. Tap42-associated protein phosphatase type 2A negatively regulates induction of autophagy. Autophagy. 5: 616-24. PMID 19223769 DOI: 10.4161/Auto.5.5.8091  0.512
2009 He C, Bartholomew CR, Zhou W, Klionsky DJ. Assaying autophagic activity in transgenic GFP-Lc3 and GFP-Gabarap zebrafish embryos. Autophagy. 5: 520-6. PMID 19221467 DOI: 10.4161/Auto.5.4.7768  0.406
2009 He C, Baba M, Klionsky DJ. Double duty of Atg9 self-association in autophagosome biogenesis. Autophagy. 5: 385-7. PMID 19182520 DOI: 10.4161/Auto.5.3.7699  0.388
2008 Noda T, Klionsky DJ. The quantitative Pho8Delta60 assay of nonspecific autophagy Methods in Enzymology. 451: 33-42. PMID 19185711 DOI: 10.1016/S0076-6879(08)03203-5  0.419
2008 Cheong H, Klionsky DJ. Biochemical methods to monitor autophagy-related processes in yeast Methods in Enzymology. 451: 1-26. PMID 19185709 DOI: 10.1016/S0076-6879(08)03201-1  0.472
2008 Klionsky DJ, Deter RL. In the autophagy trenches: The early research career of Russell L. Deter Autophagy. 4: 978-981. PMID 18971633 DOI: 10.4161/Auto.6961  0.326
2008 Cao Y, Klionsky DJ. New insights into autophagy using a multiple knockout strain Autophagy. 4: 1073-1075. PMID 18971623 DOI: 10.4161/Auto.6962  0.447
2008 Yen WL, Klionsky DJ. How to live long and prosper: Autophagy, mitochondria, and aging Physiology. 23: 248-262. PMID 18927201 DOI: 10.1152/Physiol.00013.2008  0.484
2008 He C, Baba M, Cao Y, Klionsky DJ. Self-interaction is critical for Atg9 transport and function at the phagophore assembly site during autophagy. Molecular Biology of the Cell. 19: 5506-16. PMID 18829864 DOI: 10.1091/Mbc.E08-05-0544  0.415
2008 Kanki T, Klionsky DJ. Mitophagy in yeast occurs through a selective mechanism Journal of Biological Chemistry. 283: 32386-32393. PMID 18818209 DOI: 10.1074/Jbc.M802403200  0.465
2008 Klionsky DJ, Elazar Z, Seglen PO, Rubinsztein DC. Does bafilomycin A1 block the fusion of autophagosomes with lysosomes? Autophagy. 4: 849-50. PMID 18758232 DOI: 10.4161/Auto.6845  0.32
2008 Geng J, Klionsky DJ. Quantitative regulation of vesicle formation in yeast nonspecific autophagy Autophagy. 4: 955-957. PMID 18758231 DOI: 10.4161/Auto.6791  0.519
2008 Cao Y, Cheong H, Song H, Klionsky DJ. In vivo reconstitution of autophagy in Saccharomyces cerevisiae. The Journal of Cell Biology. 182: 703-13. PMID 18725539 DOI: 10.1083/Jcb.200801035  0.506
2008 Xie Z, Nair U, Klionsky DJ. Dissecting autophagosome formation: the missing pieces. Autophagy. 4: 920-2. PMID 18719358 DOI: 10.4161/Auto.6692  0.437
2008 Monastyrska I, Reggiori F, Klionsky DJ. Harpooning the Cvt complex to the phagophore assembly site. Autophagy. 4: 914-6. PMID 18708760 DOI: 10.4161/Auto.6657  0.494
2008 Geng J, Klionsky DJ. The Atg8 and Atg12 ubiquitin-like conjugation systems in macroautophagy. 'Protein Modifications: Beyond the Usual Suspects' Review Series Embo Reports. 9: 859-864. PMID 18704115 DOI: 10.1038/Embor.2008.163  0.465
2008 Klionsky DJ. Autophagy revisited: A conversation with Christian de Duve Autophagy. 4: 740-743. PMID 18567941 DOI: 10.4161/Auto.6398  0.377
2008 Cheong H, Klionsky DJ. Dual role of Atg1 in regulation of autophagy-specific PAS assembly in Saccharomyces cerevisiae Autophagy. 4: 724-726. PMID 18552550 DOI: 10.4161/Auto.6375  0.453
2008 Xie Z, Nair U, Klionsky DJ. Atg8 controls phagophore expansion during autophagosome formation. Molecular Biology of the Cell. 19: 3290-8. PMID 18508918 DOI: 10.1091/Mbc.E07-12-1292  0.445
2008 Deretic V, Klionsky DJ. How cells clean house. Scientific American. 298: 74-81. PMID 18444328 DOI: 10.1038/Scientificamerican0508-74  0.401
2008 Legakis JE, Klionsky DJ. Analysis of autophagosome membrane cycling by fluorescence microscopy. Methods in Molecular Biology (Clifton, N.J.). 445: 135-45. PMID 18425448 DOI: 10.1007/978-1-59745-157-4_9  0.427
2008 Mizushima N, Levine B, Cuervo AM, Klionsky DJ. Autophagy fights disease through cellular self-digestion. Nature. 451: 1069-75. PMID 18305538 DOI: 10.1038/Nature06639  0.444
2008 Monastyrska I, He C, Geng J, Hoppe AD, Li Z, Klionsky DJ. Arp2 links autophagic machinery with the actin cytoskeleton. Molecular Biology of the Cell. 19: 1962-75. PMID 18287533 DOI: 10.1091/Mbc.E07-09-0892  0.447
2008 Klionsky DJ, Abeliovich H, Agostinis P, Agrawal DK, Aliev G, Askew DS, Baba M, Baehrecke EH, Bahr BA, Ballabio A, Bamber BA, Bassham DC, Bergamini E, Bi X, Biard-Piechaczyk M, et al. Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes. Autophagy. 4: 151-75. PMID 18188003 DOI: 10.4161/Auto.5338  0.383
2008 Klionsky DJ. A reagent forum Autophagy. 4: 739. DOI: 10.4161/Auto.6635  0.3
2008 Geng J, Baba M, Nair U, Klionsky DJ. Quantitative analysis of autophagy-related protein stoichiometry by fluorescence microscopy Journal of Cell Biology. 183: 1175-1175. DOI: 10.1083/Jcb.20071111220081120C  0.414
2008 Legakis JE, Klionsky DJ. Analysis of autophagosome membrane cycling by fluorescence microscopy Methods in Molecular Biology. 445: 135-145. DOI: 10.1007/978-1-59745-157-4_9  0.315
2007 Cheong H, Nair U, Geng J, Klionsky DJ. The Atg1 kinase complex is involved in the regulation of protein recruitment to initiate sequestering vesicle formation for nonspecific autophagy in Saccharomyces cerevisiae. Molecular Biology of the Cell. 19: 668-81. PMID 18077553 DOI: 10.1091/Mbc.E07-08-0826  0.498
2007 Klionsky DJ. Monitoring autophagy in yeast: The Pho8Δ60 assay Methods in Molecular Biology. 390: 363-371. PMID 17951700 DOI: 10.1007/978-1-59745-466-7_24  0.478
2007 Xie Z, Klionsky DJ. Autophagosome formation: Core machinery and adaptations Nature Cell Biology. 9: 1102-1109. PMID 17909521 DOI: 10.1038/Ncb1007-1102  0.491
2007 Cao Y, Klionsky DJ. Physiological functions of Atg6/Beclin 1: A unique autophagy-related protein Cell Research. 17: 839-849. PMID 17893711 DOI: 10.1038/Cr.2007.78  0.504
2007 Klionsky DJ. Autophagy: From phenomenology to molecular understanding in less than a decade Nature Reviews Molecular Cell Biology. 8: 931-937. PMID 17712358 DOI: 10.1038/Nrm2245  0.366
2007 Yorimitsu T, Zaman S, Broach JR, Klionsky DJ. Protein kinase A and Sch9 cooperatively regulate induction of autophagy in Saccharomyces cerevisiae. Molecular Biology of the Cell. 18: 4180-9. PMID 17699586 DOI: 10.1091/Mbc.E07-05-0485  0.446
2007 Huang J, Klionsky DJ. Autophagy and human disease Cell Cycle. 6: 1837-1849. PMID 17671424 DOI: 10.4161/Cc.6.15.4511  0.481
2007 Mijaljica D, Prescott M, Klionsky DJ, Devenish RJ. Autophagy and vacuole homeostasis: a case for self-degradation? Autophagy. 3: 417-21. PMID 17534141 DOI: 10.4161/Auto.4441  0.439
2007 Yorimitsu T, Klionsky DJ. Eating the endoplasmic reticulum: quality control by autophagy Trends in Cell Biology. 17: 279-285. PMID 17481899 DOI: 10.1016/J.Tcb.2007.04.005  0.486
2007 Huang J, Reggiori F, Klionsky DJ. The transmembrane domain of acid trehalase mediates ubiquitin-independent multivesicular body pathway sorting. Molecular Biology of the Cell. 18: 2511-24. PMID 17475771 DOI: 10.1091/Mbc.E06-11-0995  0.441
2007 Legakis JE, Yen WL, Klionsky DJ. A cycling protein complex required for selective autophagy. Autophagy. 3: 422-32. PMID 17426440 DOI: 10.4161/Auto.4129  0.499
2007 Rubinsztein DC, Gestwicki JE, Murphy LO, Klionsky DJ. Potential therapeutic applications of autophagy. Nature Reviews. Drug Discovery. 6: 304-12. PMID 17396135 DOI: 10.1038/Nrd2272  0.415
2007 He C, Klionsky DJ. Atg9 trafficking in autophagy-related pathways Autophagy. 3: 271-274. PMID 17329962 DOI: 10.4161/Auto.3912  0.432
2007 Mizushima N, Klionsky DJ. Protein turnover via autophagy: Implications for metabolism Annual Review of Nutrition. 27: 19-40. PMID 17311494 DOI: 10.1146/Annurev.Nutr.27.061406.093749  0.506
2007 Yen WL, Klionsky DJ. Atg27 is a second transmembrane cycling protein Autophagy. 3: 254-256. PMID 17297289 DOI: 10.4161/Auto.3823  0.482
2007 Klionsky DJ, Cuervo AM, Seglen PO. Methods for monitoring autophagy from yeast to human. Autophagy. 3: 181-206. PMID 17224625 DOI: 10.4161/Auto.3678  0.423
2007 Yorimitsu T, Klionsky DJ. Endoplasmic reticulum stress: A new pathway to induce aytophagy Autophagy. 3: 160-162. PMID 17204854 DOI: 10.4161/Auto.3653  0.408
2007 Yang Z, Klionsky DJ. Permeases recycle amino acids resulting from autophagy Autophagy. 3: 149-150. PMID 17204852 DOI: 10.4161/Auto.3631  0.39
2007 Tal R, Winter G, Ecker N, Klionsky DJ, Abeliovich H. Aup1p, a yeast mitochondrial protein phosphatase homolog, is required for efficient stationary phase mitophagy and cell survival. The Journal of Biological Chemistry. 282: 5617-24. PMID 17166847 DOI: 10.1074/Jbc.M605940200  0.462
2007 Yen WL, Legakis JE, Nair U, Klionsky DJ. Atg27 is required for autophagy-dependent cycling of Atg9. Molecular Biology of the Cell. 18: 581-93. PMID 17135291 DOI: 10.1091/Mbc.E06-07-0612  0.492
2007 Cao Y, Klionsky DJ. Atg26 is not involved in autophagy-related pathways in Saccharomyces cerevisiae Autophagy. 3: 17-20. PMID 17012830 DOI: 10.4161/Auto.3371  0.503
2007 Klionsky DJ. Looking back on two years of Autophagy Autophagy. 3: 1-3. DOI: 10.4161/Auto.3413  0.307
2006 He C, Song H, Yorimitsu T, Monastyrska I, Yen WL, Legakis JE, Klionsky DJ. Recruitment of Atg9 to the preautophagosomal structure by Atg11 is essential for selective autophagy in budding yeast. The Journal of Cell Biology. 175: 925-35. PMID 17178909 DOI: 10.1083/Jcb.200606084  0.508
2006 He C, Klionsky DJ. Autophagy and neurodegeneration Acs Chemical Biology. 1: 211-213. PMID 17163674 DOI: 10.1021/Cb600182H  0.433
2006 Yang Z, Huang J, Geng J, Nair U, Klionsky DJ. Atg22 recycles amino acids to link the degradative and recycling functions of autophagy. Molecular Biology of the Cell. 17: 5094-104. PMID 17021250 DOI: 10.1091/Mbc.E06-06-0479  0.443
2006 Monastyrska I, Klionsky DJ. Autophagy in organelle homeostasis: Peroxisome turnover Molecular Aspects of Medicine. 27: 483-494. PMID 16973210 DOI: 10.1016/J.Mam.2006.08.004  0.481
2006 Yorimitsu T, Nair U, Yang Z, Klionsky DJ. Endoplasmic reticulum stress triggers autophagy. The Journal of Biological Chemistry. 281: 30299-304. PMID 16901900 DOI: 10.1074/Jbc.M607007200  0.417
2006 Klionsky DJ. Let's not forget about non-specific autophagy Autophagy. 2: 257. PMID 16880729 DOI: 10.4161/Auto.3199  0.312
2006 Monastyrska I, Shintani T, Klionsky DJ, Reggiori F. Atg11 directs autophagosome cargoes to the PAS along actin cables. Autophagy. 2: 119-21. PMID 16874092 DOI: 10.4161/Auto.2.2.2298  0.481
2006 Klionsky DJ, Kumar A. A systems biology approach to learning autophagy. Autophagy. 2: 12-23. PMID 16874048 DOI: 10.4161/Auto.2227  0.371
2006 Reggiori F, Klionsky DJ. Atg9 sorting from mitochondria is impaired in early secretion and VFT-complex mutants in Saccharomyces cerevisiae Journal of Cell Science. 119: 2903-2911. PMID 16787937 DOI: 10.1242/Jcs.03047  0.518
2006 Klionsky DJ. Good riddance to bad rubbish Nature. 441: 819-820. PMID 16778876 DOI: 10.1038/441819A  0.377
2006 Klionsky DJ. How selective is autophagy? Autophagy. 2: 151-152. DOI: 10.4161/Auto.2785  0.331
2006 Legakis JE, Klionsky DJ. Overview of Autophagy Autophagy in Immunity and Infection: a Novel Immune Effector. 1-17. DOI: 10.1002/352760880X.ch1  0.314
2005 Towns R, Kabeya Y, Yoshimori T, Guo C, Shangguan Y, Hong S, Kaplan M, Klionsky DJ, Wiley JW. Sera from patients with type 2 diabetes and neuropathy induce autophagy and colocalization with mitochondria in SY5Y cells. Autophagy. 1: 163-70. PMID 16874076 DOI: 10.4161/Auto.1.3.2068  0.311
2005 Reggiori F, Shintani T, Nair U, Klionsky DJ. Atg9 cycles between mitochondria and the pre-autophagosomal structure in yeasts. Autophagy. 1: 101-9. PMID 16874040 DOI: 10.4161/Auto.1.2.1840  0.508
2005 Nazarko TY, Huang J, Nicaud JM, Klionsky DJ, Sibirny AA. Trs85 is required for macroautophagy, pexophagy and cytoplasm to vacuole targeting in Yarrowia lipolytica and Saccharomyces cerevisiae. Autophagy. 1: 37-45. PMID 16874038 DOI: 10.4161/Auto.1.1.1512  0.42
2005 Klionsky DJ. The correct way to monitor autophagy in higher eukaryotes Autophagy. 1: 65. PMID 16874029 DOI: 10.4161/Auto.1.2.1899  0.378
2005 Yorimitsu T, Klionsky DJ. Autophagy: Molecular machinery for self-eating Cell Death and Differentiation. 12: 1542-1552. PMID 16247502 DOI: 10.1038/Sj.Cdd.4401765  0.47
2005 Nair U, Klionsky DJ. Molecular mechanisms and regulation of specific and nonspecific autophagy pathways in yeast Journal of Biological Chemistry. 280: 41785-41788. PMID 16230342 DOI: 10.1074/Jbc.R500016200  0.442
2005 Reggiori F, Monastyrska I, Shintani T, Klionsky DJ. The actin cytoskeleton is required for selective types of autophagy, but not nonspecific autophagy, in the yeast Saccharomyces cerevisiae. Molecular Biology of the Cell. 16: 5843-56. PMID 16221887 DOI: 10.1091/Mbc.E05-07-0629  0.471
2005 Reggiori F, Klionsky DJ. Autophagosomes: Biogenesis from scratch? Current Opinion in Cell Biology. 17: 415-422. PMID 15978794 DOI: 10.1016/J.Ceb.2005.06.007  0.449
2005 Cheong H, Yorimitsu T, Reggiori F, Legakis JE, Wang CW, Klionsky DJ. Atg17 regulates the magnitude of the autophagic response. Molecular Biology of the Cell. 16: 3438-53. PMID 15901835 DOI: 10.1091/Mbc.E04-10-0894  0.685
2005 Klionsky DJ. Autophagy. Current Biology : Cb. 15: R282-3. PMID 15854889 DOI: 10.1016/j.cub.2005.04.013  0.31
2005 Yorimitsu T, Klionsky DJ. Atg11 links cargo to the vesicle-forming machinery in the cytoplasm to vacuole targeting pathway Molecular Biology of the Cell. 16: 1593-1605. PMID 15659643 DOI: 10.1091/Mbc.E04-11-1035  0.46
2005 Klionsky DJ. The molecular machinery of autophagy: Unanswered questions Journal of Cell Science. 118: 7-18. PMID 15615779 DOI: 10.1242/Jcs.01620  0.534
2004 Shintani T, Klionsky DJ. Autophagy in health and disease: a double-edged sword. Science (New York, N.Y.). 306: 990-5. PMID 15528435 DOI: 10.1126/Science.1099993  0.444
2004 Strømhaug PE, Reggiori F, Guan J, Wang CW, Klionsky DJ. Atg21 is a phosphoinositide binding protein required for efficient lipidation and localization of Atg8 during uptake of aminopeptidase I by selective autophagy. Molecular Biology of the Cell. 15: 3553-66. PMID 15155809 DOI: 10.1091/Mbc.E04-02-0147  0.733
2004 Shintani T, Klionsky DJ. Cargo proteins facilitate the formation of transport vesicles in the cytoplasm to vacuole targeting pathway. The Journal of Biological Chemistry. 279: 29889-94. PMID 15138258 DOI: 10.1074/Jbc.M404399200  0.456
2004 Levine B, Klionsky DJ. Development by self-digestion: Molecular mechanisms and biological functions of autophagy Developmental Cell. 6: 463-477. PMID 15068787 DOI: 10.1016/S1534-5807(04)00099-1  0.508
2004 Budovskaya YV, Stephan JS, Reggiori F, Klionsky DJ, Herman PK. The Ras/cAMP-dependent protein kinase signaling pathway regulates an early step of the autophagy process in Saccharomyces cerevisiae. The Journal of Biological Chemistry. 279: 20663-71. PMID 15016820 DOI: 10.1074/Jbc.M400272200  0.41
2004 Reggiori F, Wang CW, Nair U, Shintani T, Abeliovich H, Klionsky DJ. Early stages of the secretory pathway, but not endosomes, are required for Cvt vesicle and autophagosome assembly in Saccharomyces cerevisiae. Molecular Biology of the Cell. 15: 2189-204. PMID 15004240 DOI: 10.1091/Mbc.E03-07-0479  0.633
2004 Reggiori F, Tucker KA, Stromhaug PE, Klionsky DJ. The Atg1-Atg13 complex regulates Atg9 and Atg23 retrieval transport from the pre-autophagosomal structure. Developmental Cell. 6: 79-90. PMID 14723849 DOI: 10.1016/S1534-5807(03)00402-7  0.474
2003 Wang CW, Stromhaug PE, Kauffman EJ, Weisman LS, Klionsky DJ. Yeast homotypic vacuole fusion requires the Ccz1-Mon1 complex during the tethering/docking stage. The Journal of Cell Biology. 163: 973-85. PMID 14662743 DOI: 10.1083/Jcb.200308071  0.576
2003 Tucker KA, Reggiori F, Dunn WA, Klionsky DJ. Atg23 is essential for the cytoplasm to vacuole targeting pathway and efficient autophagy but not pexophagy. The Journal of Biological Chemistry. 278: 48445-52. PMID 14504273 DOI: 10.1074/Jbc.M309238200  0.521
2003 Wang CW, Klionsky DJ. The molecular mechanism of autophagy. Molecular Medicine (Cambridge, Mass.). 9: 65-76. PMID 12865942 DOI: 10.1007/Bf03402040  0.674
2003 Abeliovich H, Zhang C, Dunn WA, Shokat KM, Klionsky DJ. Chemical genetic analysis of Apg1 reveals a non-kinase role in the induction of autophagy. Molecular Biology of the Cell. 14: 477-90. PMID 12589048 DOI: 10.1091/Mbc.E02-07-0413  0.477
2003 Reggiori F, Wang CW, Stromhaug PE, Shintani T, Klionsky DJ. Vps51 is part of the yeast Vps fifty-three tethering complex essential for retrograde traffic from the early endosome and Cvt vesicle completion. The Journal of Biological Chemistry. 278: 5009-20. PMID 12446664 DOI: 10.1074/Jbc.M210436200  0.619
2002 Huang WP, Klionsky DJ. Autophagy in yeast: A review of the molecular machinery Cell Structure and Function. 27: 409-420. PMID 12576634 DOI: 10.1247/Csf.27.409  0.518
2002 Shintani T, Huang WP, Stromhaug PE, Klionsky DJ. Mechanism of cargo selection in the cytoplasm to vacuole targeting pathway. Developmental Cell. 3: 825-37. PMID 12479808 DOI: 10.1016/S1534-5807(02)00373-8  0.519
2002 Reggiori F, Klionsky DJ. Autophagy in the eukaryotic cell Eukaryotic Cell. 1: 11-21. PMID 12455967 DOI: 10.1128/Ec.01.1.11-21.2002  0.482
2002 Khalfan WA, Klionsky DJ. Molecular machinery required for autophagy and the cytoplasm to vacuole targeting (Cvt) pathway in S. cerevisiae. Current Opinion in Cell Biology. 14: 468-75. PMID 12383798 DOI: 10.1016/S0955-0674(02)00343-5  0.5
2002 Wang CW, Stromhaug PE, Shima J, Klionsky DJ. The Ccz1-Mon1 protein complex is required for the late step of multiple vacuole delivery pathways. The Journal of Biological Chemistry. 277: 47917-27. PMID 12364329 DOI: 10.1074/Jbc.M208191200  0.649
2002 Nice DC, Sato TK, Stromhaug PE, Emr SD, Klionsky DJ. Cooperative binding of the cytoplasm to vacuole targeting pathway proteins, Cvt13 and Cvt20, to phosphatidylinositol 3-phosphate at the pre-autophagosomal structure is required for selective autophagy. The Journal of Biological Chemistry. 277: 30198-207. PMID 12048214 DOI: 10.1074/Jbc.M204736200  0.793
2002 Kim J, Huang WP, Stromhaug PE, Klionsky DJ. Convergence of multiple autophagy and cytoplasm to vacuole targeting components to a perivacuolar membrane compartment prior to de Novo vesicle formation Journal of Biological Chemistry. 277: 763-773. PMID 11675395 DOI: 10.1074/Jbc.M109134200  0.441
2001 Guan J, Stromhaug PE, George MD, Habibzadegah-Tari P, Bevan A, Dunn WA, Klionsky DJ. Cvt18/Gsa12 is required for cytoplasm-to-vacuole transport, pexophagy, and autophagy in Saccharomyces cerevisiae and Pichia pastoris. Molecular Biology of the Cell. 12: 3821-38. PMID 11739783 DOI: 10.1091/Mbc.12.12.3821  0.659
2001 Abeliovich H, Klionsky DJ. Autophagy in yeast: Mechanistic insights and physiological function Microbiology and Molecular Biology Reviews. 65: 463-479. PMID 11528006 DOI: 10.1128/Mmbr.65.3.463-479.2001  0.464
2001 Stromhaug PE, Klionsky DJ. Approaching the molecular mechanism of autophagy Traffic. 2: 524-531. PMID 11489210 DOI: 10.1034/J.1600-0854.2001.20802.X  0.5
2001 Scott SV, Guan J, Hutchins MU, Kim J, Klionsky DJ. Cvt19 is a receptor for the cytoplasm-to-vacuole targeting pathway. Molecular Cell. 7: 1131-41. PMID 11430817 DOI: 10.1016/S1097-2765(01)00263-5  0.809
2001 Wang CW, Kim J, Huang WP, Abeliovich H, Stromhaug PE, Dunn WA, Klionsky DJ. Apg2 is a novel protein required for the cytoplasm to vacuole targeting, autophagy, and pexophagy pathways. The Journal of Biological Chemistry. 276: 30442-51. PMID 11382760 DOI: 10.1074/Jbc.M102342200  0.702
2001 Kim J, Kamada Y, Stromhaug PE, Guan J, Hefner-Gravink A, Baba M, Scott SV, Ohsumi Y, Dunn WA, Klionsky DJ. Cvt9/Gsa9 functions in sequestering selective cytosolic cargo destined for the vacuole. The Journal of Cell Biology. 153: 381-96. PMID 11309418 DOI: 10.1083/Jcb.153.2.381  0.594
2001 Hutchins MU, Klionsky DJ. Vacuolar localization of oligomeric alpha-mannosidase requires the cytoplasm to vacuole targeting and autophagy pathway components in Saccharomyces cerevisiae. The Journal of Biological Chemistry. 276: 20491-8. PMID 11264288 DOI: 10.1074/Jbc.M101150200  0.824
2001 Kim J, Huang WP, Klionsky DJ. Membrane recruitment of Aut7p in the autophagy and cytoplasm to vacuole targeting pathways requires Aut1p, Aut2p, and the autophagy conjugation complex Journal of Cell Biology. 152: 51-64. PMID 11149920 DOI: 10.1083/Jcb.152.1.51  0.455
2001 Teter SA, Eggerton KP, Scott SV, Kim J, Fischer AM, Klionsky DJ. Degradation of lipid vesicles in the yeast vacuole requires function of Cvt17, a putative lipase. The Journal of Biological Chemistry. 276: 2083-7. PMID 11085977 DOI: 10.1074/Jbc.C000739200  0.501
2000 Klionsky DJ, Emr SD. Autophagy as a regulated pathway of cellular degradation. Science (New York, N.Y.). 290: 1717-21. PMID 11099404 DOI: 10.1126/Science.290.5497.1717  0.518
2000 Abeliovich H, Dunn WA, Kim J, Klionsky DJ. Dissection of autophagosome biogenesis into distinct nucleation and expansion steps Journal of Cell Biology. 151: 1025-1033. PMID 11086004 DOI: 10.1083/Jcb.151.5.1025  0.494
2000 Kim J, Klionsky DJ. Autophagy, cytoplasm-to-vacuole targeting pathway, and pexophagy in yeast and mammalian cells Annual Review of Biochemistry. 69: 303-342. PMID 10966461 DOI: 10.1146/Annurev.Biochem.69.1.303  0.517
2000 Teter SA, Klionsky DJ. Transport of proteins to the yeast vacuole: Autophagy, cytoplasm-to-vacuole targeting, and role of the vacuole in degradation Seminars in Cell and Developmental Biology. 11: 173-179. PMID 10906274 DOI: 10.1006/Scdb.2000.0163  0.46
2000 Scott SV, Nice DC, Nau JJ, Weisman LS, Kamada Y, Keizer-Gunnink I, Funakoshi T, Veenhuis M, Ohsumi Y, Klionsky DJ. Apg13p and Vac8p are part of a complex of phosphoproteins that are required for cytoplasm to vacuole targeting. The Journal of Biological Chemistry. 275: 25840-9. PMID 10837477 DOI: 10.1074/Jbc.M002813200  0.781
2000 Kim J, Scott SV, Klionsky DJ. Alternative protein sorting pathways International Review of Cytology. 198: 153-201. PMID 10804463 DOI: 10.1016/S0074-7696(00)98005-7  0.461
2000 George MD, Baba M, Scott SV, Mizushima N, Garrison BS, Ohsumi Y, Klionsky DJ. Apg5p functions in the sequestration step in the cytoplasm-to-vacuole targeting and macroautophagy pathways. Molecular Biology of the Cell. 11: 969-82. PMID 10712513 DOI: 10.1091/Mbc.11.3.969  0.485
2000 Huang WP, Scott SV, Kim J, Klionsky DJ. The itinerary of a vesicle component, Aut7p/Cvt5p, terminates in the yeast vacuole via the autophagy/Cvt pathways Journal of Biological Chemistry. 275: 5845-5851. PMID 10681575 DOI: 10.1074/Jbc.275.8.5845  0.519
2000 Noda T, Kim J, Huang WP, Baba M, Tokunaga C, Ohsumi Y, Klionsky DJ. Apg9p/Cvt7p is an integral membrane protein required for transport vesicle formation in the Cvt and autophagy pathways Journal of Cell Biology. 148: 465-479. PMID 10662773 DOI: 10.1083/Jcb.148.3.465  0.45
1999 Klionsky DJ, Ohsumi Y. Vacuolar import of proteins and organelles from the cytoplasm Annual Review of Cell and Developmental Biology. 15: 1-32. PMID 10611955 DOI: 10.1146/Annurev.Cellbio.15.1.1  0.456
1999 Hutchins MU, Veenhuis M, Klionsky DJ. Peroxisome degradation in Saccharomyces cerevisiae is dependent on machinery of macroautophagy and the Cvt pathway. Journal of Cell Science. 112: 4079-87. PMID 10547367  0.831
1999 Teter SA, Klionsky DJ. How to get a folded protein across a membrane Trends in Cell Biology. 9: 428-431. PMID 10511706 DOI: 10.1016/S0962-8924(99)01652-9  0.433
1999 Kim J, Dalton VM, Eggerton KP, Scott SV, Klionsky DJ. Apg7p/Cvt2p is required for the cytoplasm-to-vacuole targeting, macroautophagy, and peroxisome degradation pathways Molecular Biology of the Cell. 10: 1337-1351. PMID 10233148 DOI: 10.1091/Mbc.10.5.1337  0.487
1999 Klionsky DJ, Tomashek JJ. An interactive exercise to learn eukaryotic cell structure & organelle function American Biology Teacher. 61: 539-542. DOI: 10.2307/4450758  0.32
1998 Mizushima N, Noda T, Yoshimori T, Tanaka Y, Ishii T, George MD, Klionsky DJ, Ohsumi M, Ohsumi Y. A protein conjugation system essential for autophagy. Nature. 395: 395-8. PMID 9759731 DOI: 10.1038/26506  0.481
1998 Scott SV, Klionsky DJ. Delivery of proteins and organelles to the vacuole from the cytoplasm Current Opinion in Cell Biology. 10: 523-529. PMID 9719874 DOI: 10.1016/S0955-0674(98)80068-9  0.405
1998 Klionsky DJ. Nonclassical protein sorting to the yeast vacuole Journal of Biological Chemistry. 273: 10807-10810. PMID 9556549 DOI: 10.1074/Jbc.273.18.10807  0.362
1998 Baba M, Osumi M, Scott SV, Klionsky DJ, Ohsumi Y. Two distinct pathways for targeting proteins from the cytoplasm to the vacuole/lysosome. The Journal of Cell Biology. 139: 1687-95. PMID 9412464 DOI: 10.1083/Jcb.139.7.1687  0.505
1997 Matoba S, Morano KA, Klionsky DJ, Kim K, Ogrydziak DM. Dipeptidyl aminopeptidase processing and biosynthesis of alkaline extracellular protease from Yarrowia lipolytica Microbiology. 143: 3263-3272. PMID 9353927 DOI: 10.1099/00221287-143-10-3263  0.33
1997 Tomashek JJ, Graham LA, Hutchins MU, Stevens TH, Klionsky DJ. V1-situated stalk subunits of the yeast vacuolar proton-translocating ATPase. The Journal of Biological Chemistry. 272: 26787-93. PMID 9334266 DOI: 10.1074/Jbc.272.42.26787  0.76
1997 Scott SV, Baba M, Ohsumi Y, Klionsky DJ. Aminopeptidase I is targeted to the vacuole by a nonclassical vesicular mechanism. The Journal of Cell Biology. 138: 37-44. PMID 9214379 DOI: 10.1083/Jcb.138.1.37  0.447
1997 Tomashek JJ, Garrison BS, Klionsky DJ. Reconstitution in vitro of the V1 complex from the yeast vacuolar proton-translocating ATPase. Assembly recapitulates mechanism. The Journal of Biological Chemistry. 272: 16618-23. PMID 9195975 DOI: 10.1074/Jbc.272.26.16618  0.305
1997 Kim J, Scott SV, Oda MN, Klionsky DJ. Transport of a large oligomeric protein by the cytoplasm to vacuole protein targeting pathway Journal of Cell Biology. 137: 609-618. PMID 9151668 DOI: 10.1083/Jcb.137.3.609  0.477
1997 Klionsky DJ. Protein transport from the cytoplasm into the vacuole Journal of Membrane Biology. 157: 105-115. PMID 9151652 DOI: 10.1007/S002329900220  0.462
1996 Nelson N, Klionsky DJ. Vacuolar H+-ATPase: From mammals to yeast and back Experientia. 52: 1101-1110. PMID 8988252 DOI: 10.1007/Bf01952108  0.314
1996 Scott SV, Hefner-Gravink A, Morano KA, Noda T, Ohsumi Y, Klionsky DJ. Cytoplasm-to-vacuole targeting and autophagy employ the same machinery to deliver proteins to the yeast vacuole Proceedings of the National Academy of Sciences of the United States of America. 93: 12304-12308. PMID 8901576 DOI: 10.1073/Pnas.93.22.12304  0.455
1996 Wang YX, Zhao H, Harding TM, Gomes de Mesquita DS, Woldringh CL, Klionsky DJ, Munn AL, Weisman LS. Multiple classes of yeast mutants are defective in vacuole partitioning yet target vacuole proteins correctly. Molecular Biology of the Cell. 7: 1375-89. PMID 8885233 DOI: 10.1091/Mbc.7.9.1375  0.393
1996 Harding TM, Hefner-Gravink A, Thumm M, Klionsky DJ. Genetic and phenotypic overlap between autophagy and the cytoplasm to vacuole protein targeting pathway Journal of Biological Chemistry. 271: 17621-17624. PMID 8663607 DOI: 10.1074/Jbc.271.30.17621  0.431
1996 Oda MN, Scott SV, Hefner-Gravink A, Caffarelli AD, Klionsky DJ. Identification of a cytoplasm to vacuole targeting determinant in aminopeptidase I. The Journal of Cell Biology. 132: 999-1010. PMID 8601598 DOI: 10.1083/Jcb.132.6.999  0.327
1995 Scott SV, Klionsky DJ. In vitro reconstitution of cytoplasm to vacuole protein targeting in yeast Journal of Cell Biology. 131: 1727-1735. PMID 8557740 DOI: 10.1083/Jcb.131.6.1727  0.473
1995 Harding TM, Morano KA, Scott SV, Klionsky DJ. Isolation and characterization of yeast mutants in the cytoplasm to vacuole protein targeting pathway Journal of Cell Biology. 131: 591-602. PMID 7593182 DOI: 10.1083/Jcb.131.3.591  0.424
1992 Klionsky DJ, Cueva R, Yaver DS. Aminopeptidase I of Saccharomyces cerevisiae is localized to the vacuole independent of the secretory pathway Journal of Cell Biology. 119: 287-299. PMID 1400574 DOI: 10.1083/Jcb.119.2.287  0.447
1990 Klionsky DJ, Herman PK, Emr SD. The fungal vacuole: Composition, function, and biogenesis Microbiological Reviews. 54: 266-292. PMID 2215422 DOI: 10.1128/Mmbr.54.3.266-292.1990  0.398
1988 Klionsky DJ, Banta LM, Emr SD. Intracellular sorting and processing of a yeast vacuolar hydrolase: proteinase A propeptide contains vacuolar targeting information Molecular and Cellular Biology. 8: 2105-2116. PMID 3290649 DOI: 10.1128/Mcb.8.5.2105  0.375
1988 Robinson JS, Klionsky DJ, Banta LM, Emr SD. Protein sorting in Saccharomyces cerevisiae: Isolation of mutants defective in the delivery and processing of multiple vacuolar hydrolases Molecular and Cellular Biology. 8: 4936-4948. PMID 3062374 DOI: 10.1128/Mcb.8.11.4936  0.392
1988 Banta LM, Robinson JS, Klionsky DJ, Emr SD. Organelle assembly in yeast: characterization of yeast mutants defective in vacuolar biogenesis and protein sorting Journal of Cell Biology. 107: 1369-1383. PMID 3049619 DOI: 10.1083/Jcb.107.4.1369  0.392
1987 Bedwell DM, Klionsky DJ, Emr SD. The yeast F1-ATPase beta subunit precursor contains functionally redundant mitochondrial protein import information Molecular and Cellular Biology. 7: 4038-4047. PMID 2893254 DOI: 10.1128/Mcb.7.11.4038  0.32
1985 Aris JP, Klionsky DJ, Simoni RD. The F0 subunits of the Escherichia coli F1F0-ATP synthase are sufficient to form a functional proton pore Journal of Biological Chemistry. 260: 11207-11215. PMID 2863271  0.694
1984 Klionsky DJ, Brusilow WS, Simoni RD. In vivo evidence for the role of the epsilon subunit as an inhibitor of the proton-translocating ATPase of Escherichia coli. Journal of Bacteriology. 160: 1055-60. PMID 6238948 DOI: 10.1128/Jb.160.3.1055-1060.1984  0.485
1983 Humbert R, Brusilow WS, Gunsalus RP, Klionsky DJ, Simoni RD. Escherichia coli mutants defective in the uncH gene. Journal of Bacteriology. 153: 416-22. PMID 6294057 DOI: 10.1128/Jb.153.1.416-422.1983  0.693
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