| Year |
Citation |
Score |
| 2015 |
Kumar MP, Turki H, Preston D, Koller D. Parameter Estimation and Energy Minimization for Region-Based Semantic Segmentation. Ieee Transactions On Pattern Analysis and Machine Intelligence. 37: 1373-86. PMID 26352446 DOI: 10.1109/Tpami.2014.2372766 |
0.332 |
|
| 2015 |
Pierson E, Koller D, Battle A, Mostafavi S, Ardlie KG, Getz G, Wright FA, Kellis M, Volpi S, Dermitzakis ET. Sharing and Specificity of Co-expression Networks across 35 Human Tissues. Plos Computational Biology. 11: e1004220. PMID 25970446 DOI: 10.1371/Journal.Pcbi.1004220 |
0.33 |
|
| 2014 |
Mostafavi S, Ortiz-Lopez A, Bogue MA, Hattori K, Pop C, Koller D, Mathis D, Benoist C. Variation and genetic control of gene expression in primary immunocytes across inbred mouse strains. Journal of Immunology (Baltimore, Md. : 1950). 193: 4485-96. PMID 25267973 DOI: 10.4049/Jimmunol.1401280 |
0.325 |
|
| 2014 |
Mostafavi S, Battle A, Zhu X, Potash JB, Weissman MM, Shi J, Beckman K, Haudenschild C, McCormick C, Mei R, Gameroff MJ, Gindes H, Adams P, Goes FS, Mondimore FM, ... ... Koller D, et al. Type I interferon signaling genes in recurrent major depression: increased expression detected by whole-blood RNA sequencing. Molecular Psychiatry. 19: 1267-74. PMID 24296977 DOI: 10.1038/Mp.2013.161 |
0.324 |
|
| 2014 |
Battle A, Mostafavi S, Zhu X, Potash JB, Weissman MM, McCormick C, Haudenschild CD, Beckman KB, Shi J, Mei R, Urban AE, Montgomery SB, Levinson DF, Koller D. Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals. Genome Research. 24: 14-24. PMID 24092820 DOI: 10.1101/Gr.155192.113 |
0.319 |
|
| 2013 |
Mostafavi S, Battle A, Zhu X, Urban AE, Levinson D, Montgomery SB, Koller D. Normalizing RNA-sequencing data by modeling hidden covariates with prior knowledge. Plos One. 8: e68141. PMID 23874524 DOI: 10.1371/Journal.Pone.0068141 |
0.327 |
|
| 2013 |
Jojic V, Shay T, Sylvia K, Zuk O, Sun X, Kang J, Regev A, Koller D, Best AJ, Knell J, Goldrath A, Joic V, Koller D, Shay T, et al. Identification of transcriptional regulators in the mouse immune system. Nature Immunology. 14: 633-43. PMID 23624555 DOI: 10.1038/Ni.2587 |
0.327 |
|
| 2013 |
Shay T, Jojic V, Zuk O, Rothamel K, Puyraimond-Zemmour D, Feng T, Wakamatsu E, Benoist C, Koller D, Regev A. Conservation and divergence in the transcriptional programs of the human and mouse immune systems Proceedings of the National Academy of Sciences of the United States of America. 110: 2946-2951. PMID 23382184 DOI: 10.1073/Pnas.1222738110 |
0.31 |
|
| 2012 |
Donner Y, Feng T, Benoist C, Koller D. Imputing gene expression from selectively reduced probe sets Nature Methods. 9: 1120-1125. PMID 23064520 DOI: 10.1038/Nmeth.2207 |
0.367 |
|
| 2012 |
Boxem M, Maliga Z, Klitgord N, Li N, Lemmens I, Mana M, Lichtervelde LD, Mul JD, Peut DVD, Devos M, Simonis N, Yildirim MA, Cokol M, Kao HL, Smet ASD, ... ... Koller D, et al. Erratum: A protein domain-based interactome network for C. elegans early embryogenesis (Cell (2008) 134 (534-545)) Cell. 151. DOI: 10.1016/J.Cell.2012.11.042 |
0.432 |
|
| 2010 |
Battle A, Jonikas MC, Walter P, Weissman JS, Koller D. Automated identification of pathways from quantitative genetic interaction data. Molecular Systems Biology. 6: 379. PMID 20531408 DOI: 10.1038/Msb.2010.27 |
0.356 |
|
| 2010 |
Hillenmeyer ME, Ericson E, Davis RW, Nislow C, Koller D, Giaever G. Systematic analysis of genome-wide fitness data in yeast reveals novel gene function and drug action. Genome Biology. 11: R30. PMID 20226027 DOI: 10.1186/Gb-2010-11-3-R30 |
0.327 |
|
| 2010 |
Moussavi F, Heitz G, Amat F, Comolli LR, Koller D, Horowitz M. 3D segmentation of cell boundaries from whole cell cryogenic electron tomography volumes. Journal of Structural Biology. 170: 134-45. PMID 20035877 DOI: 10.1016/J.Jsb.2009.12.015 |
0.306 |
|
| 2009 |
Chechik G, Koller D. Timing of gene expression responses to environmental changes. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 279-90. PMID 19193146 DOI: 10.1089/Cmb.2008.13Tt |
0.332 |
|
| 2009 |
Lee SI, Dudley AM, Drubin D, Silver PA, Krogan NJ, Pe'er D, Koller D. Learning a prior on regulatory potential from eQTL data. Plos Genetics. 5: e1000358. PMID 19180192 DOI: 10.1371/Journal.Pgen.1000358 |
0.375 |
|
| 2009 |
Wang H, Kakaradov B, Collins SR, Karotki L, Fiedler D, Shales M, Shokat KM, Walther TC, Krogan NJ, Koller D. A complex-based reconstruction of the Saccharomyces cerevisiae interactome. Molecular & Cellular Proteomics : McP. 8: 1361-81. PMID 19176519 DOI: 10.1074/Mcp.M800490-Mcp200 |
0.482 |
|
| 2008 |
Boxem M, Maliga Z, Klitgord N, Li N, Lemmens I, Mana M, de Lichtervelde L, Mul JD, van de Peut D, Devos M, Simonis N, Yildirim MA, Cokol M, Kao HL, de Smet AS, ... ... Koller D, et al. A protein domain-based interactome network for C. elegans early embryogenesis. Cell. 134: 534-45. PMID 18692475 DOI: 10.1016/J.Cell.2008.07.009 |
0.463 |
|
| 2008 |
Gould S, Rodgers J, Cohen D, Elidan G, Koller D. Multi-Class Segmentation with Relative Location Prior International Journal of Computer Vision. 80: 300-316. DOI: 10.1007/S11263-008-0140-X |
0.301 |
|
| 2007 |
Stranger BE, Nica AC, Forrest MS, Dimas A, Bird CP, Beazley C, Ingle CE, Dunning M, Flicek P, Koller D, Montgomery S, Tavaré S, Deloukas P, Dermitzakis ET. Population genomics of human gene expression. Nature Genetics. 39: 1217-24. PMID 17873874 DOI: 10.1038/Ng2142 |
0.309 |
|
| 2007 |
Wang H, Segal E, Ben-Hur A, Li QR, Vidal M, Koller D. InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale. Genome Biology. 8: R192. PMID 17868464 DOI: 10.1186/Gb-2007-8-9-R192 |
0.565 |
|
| 2007 |
Bacchus F, Grove A, Halpern JY, Koller D. A RESPONSE TO “BELIEVING ON THE BASIS OF THE EVIDENCE” Computational Intelligence. 10: 21-25. DOI: 10.1111/j.1467-8640.1994.tb00141.x |
0.343 |
|
| 2006 |
Lee SI, Pe'er D, Dudley AM, Church GM, Koller D. Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification. Proceedings of the National Academy of Sciences of the United States of America. 103: 14062-7. PMID 16968785 DOI: 10.1073/Pnas.0601852103 |
0.345 |
|
| 2006 |
Blum B, Shelton CR, Koller D. A Continuation Method for Nash Equilibria in Structured Games Journal of Artificial Intelligence Research. 25: 457-502. DOI: 10.1613/Jair.1947 |
0.304 |
|
| 2006 |
Rodgers J, Anguelov D, Pang HC, Koller D. Object pose detection in range scan data Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 2: 2445-2452. DOI: 10.1109/CVPR.2006.212 |
0.733 |
|
| 2005 |
Battle A, Segal E, Koller D. Probabilistic discovery of overlapping cellular processes and their regulation. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 12: 909-27. PMID 16201912 DOI: 10.1089/Cmb.2005.12.909 |
0.538 |
|
| 2005 |
Segal E, Friedman N, Kaminski N, Regev A, Koller D. From signatures to models: understanding cancer using microarrays. Nature Genetics. 37: S38-45. PMID 15920529 DOI: 10.1038/Ng1561 |
0.626 |
|
| 2005 |
Anguelov D, Srinivasan P, Koller D, Thrun S, Rodgers J, Davis J. SCAPE: Shape Completion and Animation of People Acm Transactions On Graphics. 24: 408-416. DOI: 10.1145/1073204.1073207 |
0.723 |
|
| 2005 |
Anguelov D, Taskar B, Chatalbashev V, Koller D, Gupta D, Heitz G, Ng A. Discriminative learning of Markov Random fields for segmentation of 3D scan data Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 2: 169-176. DOI: 10.1109/CVPR.2005.133 |
0.742 |
|
| 2004 |
Segal E, Friedman N, Koller D, Regev A. A module map showing conditional activity of expression modules in cancer. Nature Genetics. 36: 1090-8. PMID 15448693 DOI: 10.1038/Ng1434 |
0.615 |
|
| 2004 |
Marion RM, Regev A, Segal E, Barash Y, Koller D, Friedman N, O'Shea EK. Sfp1 is a stress- and nutrient-sensitive regulator of ribosomal protein gene expression. Proceedings of the National Academy of Sciences of the United States of America. 101: 14315-22. PMID 15353587 DOI: 10.1073/Pnas.0405353101 |
0.629 |
|
| 2004 |
Getoor L, Rhee JT, Koller D, Small P. Understanding tuberculosis epidemiology using structured statistical models. Artificial Intelligence in Medicine. 30: 233-56. PMID 15081074 DOI: 10.1016/J.Artmed.2003.11.003 |
0.679 |
|
| 2004 |
Halpern JY, Koller D. Representation Dependence in Probabilistic Inference Journal of Artificial Intelligence Research. 21: 319-356. DOI: 10.1613/Jair.1292 |
0.513 |
|
| 2004 |
Anguelov D, Koller D, Parker E, Thrun S. Detecting and modeling doors with mobile robots Proceedings - Ieee International Conference On Robotics and Automation. 2004: 3777-3784. |
0.721 |
|
| 2003 |
Stuart JM, Segal E, Koller D, Kim SK. A gene-coexpression network for global discovery of conserved genetic modules. Science (New York, N.Y.). 302: 249-55. PMID 12934013 DOI: 10.1126/Science.1087447 |
0.516 |
|
| 2003 |
Segal E, Yelensky R, Koller D. Genome-wide discovery of transcriptional modules from DNA sequence and gene expression. Bioinformatics (Oxford, England). 19: i273-82. PMID 12855470 DOI: 10.1093/Bioinformatics/Btg1038 |
0.548 |
|
| 2003 |
Segal E, Wang H, Koller D. Discovering molecular pathways from protein interaction and gene expression data. Bioinformatics (Oxford, England). 19: i264-71. PMID 12855469 DOI: 10.1093/Bioinformatics/Btg1037 |
0.627 |
|
| 2003 |
Segal E, Shapira M, Regev A, Pe'er D, Botstein D, Koller D, Friedman N. Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. Nature Genetics. 34: 166-76. PMID 12740579 DOI: 10.1038/Ng1165 |
0.652 |
|
| 2003 |
Segal E, Battle A, Koller D. Decomposing gene expression into cellular processes. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 89-100. PMID 12603020 DOI: 10.1142/9789812776303_0009 |
0.464 |
|
| 2003 |
Guestrin C, Koller D, Parr R, Venkataraman S. Efficient solution algorithms for factored MDPs Journal of Artificial Intelligence Research. 19: 399-468. DOI: 10.1613/Jair.1000 |
0.711 |
|
| 2003 |
Friedman N, Koller D. Being Bayesian about network structure. A Bayesian approach to structure discovery in Bayesian networks Machine Learning. 50: 95-125. DOI: 10.1023/A:1020249912095 |
0.577 |
|
| 2002 |
Tong S, Koller D. Support vector machine active learning with applications to text classification Journal of Machine Learning Research. 2: 45-66. DOI: 10.1162/153244302760185243 |
0.554 |
|
| 2002 |
Segal E, Barash Y, Simon I, Friedman N, Koller D. From promoter sequence to expression: A probabilistic framework Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 263-272. |
0.4 |
|
| 2002 |
Segal E, Koller D. Probabilistic hierarchical clustering for biological data Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 273-280. |
0.39 |
|
| 2001 |
Segal E, Taskar B, Gasch A, Friedman N, Koller D. Rich probabilistic models for gene expression. Bioinformatics (Oxford, England). 17: S243-52. PMID 11473015 DOI: 10.1093/Bioinformatics/17.Suppl_1.S243 |
0.748 |
|
| 2001 |
Getoor L, Taskar B, Koller D. Selectivity estimation using probabilistic models Proceedings of the Acm Sigmod International Conference On Management of Data. 461-472. |
0.613 |
|
| 2000 |
Friedman N, Halpern JY, Koller D. First-order conditional logic for default reasoning revisited Acm Transactions On Computational Logic. 1: 175-207. DOI: 10.1145/359496.359500 |
0.622 |
|
| 1997 |
Binder J, Koller D, Russell S, Kanazawa K. Adaptive Probabilistic Networks with Hidden Variables Machine Learning. 29: 213-244. DOI: 10.1023/A:1007421730016 |
0.326 |
|
| 1997 |
Koller D, Pfeffer A. Representations and solutions for game-theoretic problems Artificial Intelligence. 94: 167-215. DOI: 10.1016/S0004-3702(97)00023-4 |
0.304 |
|
| 1997 |
Karger DR, Koller D. (De)randomized Construction of Small Sample Spaces in NC Journal of Computer and System Sciences. 55: 402-413. DOI: 10.1006/Jcss.1997.1532 |
0.332 |
|
| 1996 |
Grove AJ, Halpern JY, Koller D. Asymptotic conditional probabilities: The non-unary case Journal of Symbolic Logic. 61: 250-276. DOI: 10.2307/2275609 |
0.488 |
|
| 1996 |
Grove AJ, Halpern JY, Koller D. Asymptotic conditional probabilities: The unary case Siam Journal On Computing. 25: 1-51. DOI: 10.1137/S0097539793257034 |
0.488 |
|
| 1996 |
Bacchus F, Grove AJ, Halpern JY, Koller D. From statistical knowledge bases to degrees of belief Artificial Intelligence. 87: 75-143. DOI: 10.1016/S0004-3702(96)00003-3 |
0.51 |
|
| 1992 |
Grove AJ, Halpern JY, Koller D. Random worlds and maximum entropy Proceedings - Symposium On Logic in Computer Science. 22-33. DOI: 10.1613/Jair.61 |
0.49 |
|
| 1992 |
Grove AJ, Halpern JY, Koller D. Asymptotic conditional probabilities for first-order logic Conference Proceedings of the Annual Acm Symposium On Theory of Computing. 294-305. |
0.429 |
|
| 1992 |
Bacchus F, Grove A, Halpern JY, Koller D. From statistics to beliefs Proceedings Tenth National Conference On Artificial Intelligence. 602-608. |
0.443 |
|
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