Amy E. Palmer - Publications

2002 Stanford University, Palo Alto, CA 

67 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Mukherjee S, Hung ST, Douglas N, Manna P, Thomas C, Ekrem A, Palmer AE, Jimenez R. Engineering of a brighter variant of the FusionRed fluorescent protein using lifetime flow-cytometry and structure-guided mutations. Biochemistry. PMID 32914619 DOI: 10.1021/acs.biochem.0c00484  0.64
2019 Manna P, Hung ST, Mukherjee S, Friis P, Simpson DM, Lo M, Palmer AE, Jimenez R. Erratum: Directed evolution of excited state lifetime and brightness in FusionRed using a microfluidic sorter. Integrative Biology : Quantitative Biosciences From Nano to Macro. PMID 31788687 DOI: 10.1093/intbio/zyz032  0.64
2019 Sanford L, Carpenter MC, Palmer AE. Intracellular Zn transients modulate global gene expression in dissociated rat hippocampal neurons. Scientific Reports. 9: 9411. PMID 31253848 DOI: 10.1038/s41598-019-45844-2  0.48
2019 Slocum JD, Palmer AE, Jimenez R. Intramolecular Fluorescent Protein Association in a Class of Zinc FRET Sensors Leads to Increased Dynamic Range. The Journal of Physical Chemistry. B. PMID 30942588 DOI: 10.1021/acs.jpcb.9b02479  0.64
2019 Nolin E, Gans S, Llamas L, Bandyopadhyay S, Brittain SM, Bernasconi-Elias P, Carter KP, Loureiro JJ, Thomas JR, Schirle M, Yang Y, Guo N, Roma G, Schuierer S, Beibel M, ... ... Palmer AE, et al. Discovery of a ZIP7 inhibitor from a Notch pathway screen. Nature Chemical Biology. PMID 30643281 DOI: 10.1038/s41589-018-0200-7  0.48
2018 Manna P, Hung ST, Mukherjee S, Friis P, Simpson DM, Lo MN, Palmer AE, Jimenez R. Directed evolution of excited state lifetime and brightness in FusionRed using a microfluidic sorter. Integrative Biology : Quantitative Biosciences From Nano to Macro. PMID 30094420 DOI: 10.1039/c8ib00103k  0.64
2018 Braselmann E, Wierzba AJ, Polaski JT, Chromiński M, Holmes ZE, Hung ST, Batan D, Wheeler JR, Parker R, Jimenez R, Gryko D, Batey RT, Palmer AE. A multicolor riboswitch-based platform for imaging of RNA in live mammalian cells. Nature Chemical Biology. PMID 30061719 DOI: 10.1038/s41589-018-0103-7  0.64
2017 Carter KP, Carpenter MC, Fiedler BL, Jimenez R, Palmer AE. Critical comparison of FRET-sensor functionality in the cytosol and endoplasmic reticulum and implications for quantification of ions. Analytical Chemistry. PMID 28758723 DOI: 10.1021/acs.analchem.7b02933  0.64
2017 Carpenter MC, Palmer AE. Native and engineered sensors for Ca(2+) and Zn(2+): lessons from calmodulin and MTF1. Essays in Biochemistry. 61: 237-243. PMID 28487400 DOI: 10.1042/EBC20160069  0.48
2017 Lauinger L, Li J, Shostak A, Cemel IA, Ha N, Zhang Y, Merkl PE, Obermeyer S, Stankovic-Valentin N, Schafmeier T, Wever WJ, Bowers AA, Carter KP, Palmer AE, Tschochner H, et al. Thiolutin is a zinc chelator that inhibits the Rpn11 and other JAMM metalloproteases. Nature Chemical Biology. PMID 28459440 DOI: 10.1038/nchembio.2370  0.48
2017 Li J, Yakushi T, Parlati F, Mackinnon AL, Perez C, Ma Y, Carter KP, Colayco S, Magnuson G, Brown B, Nguyen K, Vasile S, Suyama E, Smith LH, Sergienko E, ... ... Palmer AE, et al. Capzimin is a potent and specific inhibitor of proteasome isopeptidase Rpn11. Nature Chemical Biology. PMID 28244987 DOI: 10.1038/nchembio.2326  0.48
2016 Fiedler BL, Van Buskirk S, Carter KP, Qin Y, Carpenter MC, Palmer AE, Jimenez R. Droplet Microfluidic Flow Cytometer For Sorting On Transient Cellular Responses Of Genetically-Encoded Sensors. Analytical Chemistry. PMID 27959493 DOI: 10.1021/acs.analchem.6b03235  0.64
2016 Rodriguez EA, Campbell RE, Lin JY, Lin MZ, Miyawaki A, Palmer AE, Shu X, Zhang J, Tsien RY. The Growing and Glowing Toolbox of Fluorescent and Photoactive Proteins. Trends in Biochemical Sciences. PMID 27814948 DOI: 10.1016/j.tibs.2016.09.010  0.96
2016 Palmer AE, Zhang J. Roger Y. Tsien 1952-2016. Nature Chemical Biology. PMID 27669418 DOI: 10.1038/nchembio.2213  0.96
2016 Carpenter MC, Lo MN, Palmer AE. Techniques for measuring cellular zinc. Archives of Biochemistry and Biophysics. PMID 27580940 DOI: 10.1016/  0.48
2016 Qin Y, Sammond DW, Braselmann E, Carpenter MC, Palmer AE. Development of an optical Zn2+ probe based on a single fluorescent protein. Acs Chemical Biology. PMID 27467056 DOI: 10.1021/acschembio.6b00442  0.48
2016 Carpenter MC, Palmer AE. Unraveling the mystery of the ring: Tracking heme dynamics in living cells. Proceedings of the National Academy of Sciences of the United States of America. PMID 27342864 DOI: 10.1073/pnas.1607505113  0.48
2015 Dean KM, Davis LM, Lubbeck JL, Manna P, Friis P, Palmer AE, Jimenez R. High-speed multiparameter photophysical analyses of fluorophore libraries. Analytical Chemistry. 87: 5026-30. PMID 25898152 DOI: 10.1021/acs.analchem.5b00607  0.92
2015 Kim TJ, Joo C, Seong J, Vafabakhsh R, Botvinick EL, Berns MW, Palmer AE, Wang N, Ha T, Jakobsson E, Sun J, Wang Y. Distinct mechanisms regulating mechanical force-induced Ca²⁺ signals at the plasma membrane and the ER in human MSCs. Elife. 4: e04876. PMID 25667984 DOI: 10.7554/eLife.04876  0.92
2015 Park JG, Palmer AE. Properties and use of genetically encoded FRET sensors for cytosolic and organellar Ca2+ measurements. Cold Spring Harbor Protocols. 2015: pdb.top066043. PMID 25561625 DOI: 10.1101/pdb.top066043  0.92
2015 Park JG, Palmer AE. Verifying the function and localization of genetically encoded Ca2+ sensors and converting FRET ratios to Ca2+ concentrations. Cold Spring Harbor Protocols. 2015: pdb.prot076547. PMID 25561614 DOI: 10.1101/pdb.prot076547  0.92
2015 Dean KM, Lubbeck JL, Davis LM, Regmi CK, Chapagain PP, Gerstman BS, Jimenez R, Palmer AE. Microfluidics-based selection of red-fluorescent proteins with decreased rates of photobleaching. Integrative Biology : Quantitative Biosciences From Nano to Macro. 7: 263-73. PMID 25477249 DOI: 10.1039/c4ib00251b  0.92
2014 Carter KP, Palmer AE. Metallobiology: zinc differently. Nature Chemistry. 7: 96-7. PMID 25615659 DOI: 10.1038/nchem.2165  0.92
2014 Farnsworth NL, Mead BE, Antunez LR, Palmer AE, Bryant SJ. Ionic osmolytes and intracellular calcium regulate tissue production in chondrocytes cultured in a 3D charged hydrogel. Matrix Biology : Journal of the International Society For Matrix Biology. 40: 17-26. PMID 25128592 DOI: 10.1016/j.matbio.2014.08.002  0.92
2014 Dean KM, Palmer AE. Advances in fluorescence labeling strategies for dynamic cellular imaging. Nature Chemical Biology. 10: 512-23. PMID 24937069 DOI: 10.1038/nchembio.1556  0.92
2014 Carter KP, Young AM, Palmer AE. Fluorescent sensors for measuring metal ions in living systems. Chemical Reviews. 114: 4564-601. PMID 24588137 DOI: 10.1021/cr400546e  0.92
2014 Park JG, Palmer AE. Quantitative measurement of Ca2+ and Zn2+ in mammalian cells using genetically encoded fluorescent biosensors. Methods in Molecular Biology (Clifton, N.J.). 1071: 29-47. PMID 24052378 DOI: 10.1007/978-1-62703-622-1_3  0.92
2014 Dean KM, Davis LM, Lubbeck JL, Manna P, Palmer AE, Jimenez R. Microfluidic flow cytometer for multiparameter screening of fluorophore photophysics Conference On Lasers and Electro-Optics Europe - Technical Digest. 2014.  0.92
2013 Qin Y, Miranda JG, Stoddard CI, Dean KM, Galati DF, Palmer AE. Direct comparison of a genetically encoded sensor and small molecule indicator: implications for quantification of cytosolic Zn(2+). Acs Chemical Biology. 8: 2366-71. PMID 23992616 DOI: 10.1021/cb4003859  0.92
2013 Davis LM, Lubbeck JL, Dean KM, Palmer AE, Jimenez R. Microfluidic cell sorter for use in developing red fluorescent proteins with improved photostability. Lab On a Chip. 13: 2320-7. PMID 23636097 DOI: 10.1039/c3lc50191d  0.92
2012 Jeong J, Walker JM, Wang F, Park JG, Palmer AE, Giunta C, Rohrbach M, Steinmann B, Eide DJ. Promotion of vesicular zinc efflux by ZIP13 and its implications for spondylocheiro dysplastic Ehlers-Danlos syndrome. Proceedings of the National Academy of Sciences of the United States of America. 109: E3530-8. PMID 23213233 DOI: 10.1073/pnas.1211775110  0.32
2012 Miranda JG, Weaver AL, Qin Y, Park JG, Stoddard CI, Lin MZ, Palmer AE. New alternately colored FRET sensors for simultaneous monitoring of Zn²⁺ in multiple cellular locations. Plos One. 7: e49371. PMID 23173058 DOI: 10.1371/journal.pone.0049371  0.92
2012 Geng X, Huang C, Qin Y, McCombs JE, Yuan Q, Harry BL, Palmer AE, Xia NS, Xue D. Hepatitis B virus X protein targets Bcl-2 proteins to increase intracellular calcium, required for virus replication and cell death induction. Proceedings of the National Academy of Sciences of the United States of America. 109: 18471-6. PMID 23091012 DOI: 10.1073/pnas.1204668109  0.92
2012 Park JG, Qin Y, Galati DF, Palmer AE. New sensors for quantitative measurement of mitochondrial Zn(2+). Acs Chemical Biology. 7: 1636-40. PMID 22850482 DOI: 10.1021/cb300171p  0.48
2012 Dean KM, Qin Y, Palmer AE. Visualizing metal ions in cells: an overview of analytical techniques, approaches, and probes. Biochimica Et Biophysica Acta. 1823: 1406-15. PMID 22521452 DOI: 10.1016/j.bbamcr.2012.04.001  0.92
2012 West DC, Qin Y, Peterson QP, Thomas DL, Palchaudhuri R, Morrison KC, Lucas PW, Palmer AE, Fan TM, Hergenrother PJ. Differential effects of procaspase-3 activating compounds in the induction of cancer cell death. Molecular Pharmaceutics. 9: 1425-34. PMID 22486564 DOI: 10.1021/mp200673n  0.92
2012 Lubbeck JL, Dean KM, Ma H, Palmer AE, Jimenez R. Microfluidic flow cytometer for quantifying photobleaching of fluorescent proteins in cells. Analytical Chemistry. 84: 3929-37. PMID 22424298 DOI: 10.1021/ac202825z  0.92
2012 Ma H, Gibson EA, Dittmer PJ, Jimenez R, Palmer AE. High-throughput examination of fluorescence resonance energy transfer-detected metal-ion response in mammalian cells. Journal of the American Chemical Society. 134: 2488-91. PMID 22260720 DOI: 10.1021/ja2101592  0.92
2012 Davis LM, Lubbeck JL, Dean KM, Palmer AE, Jimenez R. Real-time analysis of multi-laser-beam fluorescence for timed control of laser tweezers in a microfluidic cell-sorting device Proceedings of Spie - the International Society For Optical Engineering. 8412. DOI: 10.1117/12.2001362  0.92
2011 Dean KM, Lubbeck JL, Binder JK, Schwall LR, Jimenez R, Palmer AE. Analysis of red-fluorescent proteins provides insight into dark-state conversion and photodegradation. Biophysical Journal. 101: 961-9. PMID 21843488 DOI: 10.1016/j.bpj.2011.06.055  0.92
2011 Qin Y, Dittmer PJ, Park JG, Jansen KB, Palmer AE. Measuring steady-state and dynamic endoplasmic reticulum and Golgi Zn2+ with genetically encoded sensors. Proceedings of the National Academy of Sciences of the United States of America. 108: 7351-6. PMID 21502528 DOI: 10.1073/pnas.1015686108  0.92
2011 Palmer AE, Qin Y, Park JG, McCombs JE. Design and application of genetically encoded biosensors. Trends in Biotechnology. 29: 144-52. PMID 21251723 DOI: 10.1016/j.tibtech.2010.12.004  0.92
2010 Perocchi F, Gohil VM, Girgis HS, Bao XR, McCombs JE, Palmer AE, Mootha VK. MICU1 encodes a mitochondrial EF hand protein required for Ca(2+) uptake. Nature. 467: 291-6. PMID 20693986 DOI: 10.1038/nature09358  0.92
2010 Ong DS, Mu TW, Palmer AE, Kelly JW. Endoplasmic reticulum Ca2+ increases enhance mutant glucocerebrosidase proteostasis. Nature Chemical Biology. 6: 424-32. PMID 20453863 DOI: 10.1038/nchembio.368  0.92
2010 McCombs JE, Gibson EA, Palmer AE. Using a genetically targeted sensor to investigate the role of presenilin-1 in ER Ca2+ levels and dynamics. Molecular Biosystems. 6: 1640-9. PMID 20379593 DOI: 10.1039/c001975e  0.92
2009 Palmer AE, Franz KJ. Introduction to "cellular metal homeostasis and trafficking". Chemical Reviews. 109: 4533-5. PMID 19778037 DOI: 10.1021/cr900293t  0.92
2009 Schafer D, Gibson EA, Salim EA, Palmer AE, Jimenez R, Squier J. Microfluidic cell counter with embedded optical fibers fabricated by femtosecond laser ablation and anodic bonding. Optics Express. 17: 6068-73. PMID 19365429 DOI: 10.1364/OE.17.006068  0.92
2009 Schafer D, Gibson EA, Salim EA, Palmer AE, Jimenez R, Squier J. An optically integrated microfluidic cell counter fabricated by femtosecond laser ablation and anodic bonding Optics Infobase Conference Papers 0.92
2008 Wallace DJ, Meyer zum Alten Borgloh S, Astori S, Yang Y, Bausen M, Kügler S, Palmer AE, Tsien RY, Sprengel R, Kerr JN, Denk W, Hasan MT. Single-spike detection in vitro and in vivo with a genetic Ca2+ sensor. Nature Methods. 5: 797-804. PMID 19160514 DOI: 10.1038/nmeth.1242  0.92
2008 McCombs JE, Palmer AE. Measuring calcium dynamics in living cells with genetically encodable calcium indicators. Methods (San Diego, Calif.). 46: 152-9. PMID 18848629 DOI: 10.1016/j.ymeth.2008.09.015  0.92
2008 Xu C, Xu W, Palmer AE, Reed JC. BI-1 regulates endoplasmic reticulum Ca2+ homeostasis downstream of Bcl-2 family proteins. The Journal of Biological Chemistry. 283: 11477-84. PMID 18299329 DOI: 10.1074/jbc.M708385200  0.32
2008 Palmer AE, Dittmer P, McCombs JE. Genetically encoded sensors for calcium and zinc Progress in Biomedical Optics and Imaging - Proceedings of Spie. 6868. DOI: 10.1117/12.764262  0.92
2006 Palmer AE, Tsien RY. Measuring calcium signaling using genetically targetable fluorescent indicators. Nature Protocols. 1: 1057-65. PMID 17406387 DOI: 10.1038/nprot.2006.172  0.92
2006 Duman JG, Chen L, Palmer AE, Hille B. Contributions of intracellular compartments to calcium dynamics: implicating an acidic store. Traffic (Copenhagen, Denmark). 7: 859-72. PMID 16787398 DOI: 10.1111/j.1600-0854.2006.00432.x  0.92
2006 Palmer AE, Giacomello M, Kortemme T, Hires SA, Lev-Ram V, Baker D, Tsien RY. Ca2+ indicators based on computationally redesigned calmodulin-peptide pairs. Chemistry & Biology. 13: 521-30. PMID 16720273 DOI: 10.1016/j.chembiol.2006.03.007  0.92
2005 Quintanar L, Yoon J, Aznar CP, Palmer AE, Andersson KK, Britt RD, Solomon EI. Spectroscopic and electronic structure studies of the trinuclear Cu cluster active site of the multicopper oxidase laccase: Nature of its coordination unsaturation Journal of the American Chemical Society. 127: 13832-13845. PMID 16201804 DOI: 10.1021/ja0421405  0.92
2004 Palmer AE, Jin C, Reed JC, Tsien RY. Bcl-2-mediated alterations in endoplasmic reticulum Ca2+ analyzed with an improved genetically encoded fluorescent sensor. Proceedings of the National Academy of Sciences of the United States of America. 101: 17404-9. PMID 15585581 DOI: 10.1073/pnas.0408030101  0.92
2004 Shaner NC, Campbell RE, Steinbach PA, Giepmans BN, Palmer AE, Tsien RY. Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nature Biotechnology. 22: 1567-72. PMID 15558047 DOI: 10.1038/nbt1037  0.92
2003 Palmer AE, Szilagyi RK, Cherry JR, Jones A, Xu F, Solomon EI. Spectroscopic characterization of the Leu513His variant of fungal laccase: effect of increased axial ligand interaction on the geometric and electronic structure of the type 1 Cu site. Inorganic Chemistry. 42: 4006-17. PMID 12817956 DOI: 10.1021/ic026099n  0.92
2003 Andersson KK, Schmidt PP, Katterle B, Strand KR, Palmer AE, Lee SK, Solomon EI, Gräslund A, Barra AL. Examples of high-frequency EPR studies in bioinorganic chemistry. Journal of Biological Inorganic Chemistry : Jbic : a Publication of the Society of Biological Inorganic Chemistry. 8: 235-47. PMID 12589559 DOI: 10.1007/s00775-002-0429-0  1
2002 Campbell RE, Tour O, Palmer AE, Steinbach PA, Baird GS, Zacharias DA, Tsien RY. A monomeric red fluorescent protein. Proceedings of the National Academy of Sciences of the United States of America. 99: 7877-82. PMID 12060735 DOI: 10.1073/pnas.082243699  0.92
2002 Palmer AE, Quintanar L, Severance S, Wang TP, Kosman DJ, Solomon EI. Spectroscopic characterization and O2 reactivity of the trinuclear Cu cluster of mutants of the multicopper oxidase Fet3p. Biochemistry. 41: 6438-48. PMID 12009907  1
2001 Solomon EI, Chen P, Metz M, Lee SK, Palmer AE. Oxygen Binding, Activation, and Reduction to Water by Copper Proteins. Angewandte Chemie (International Ed. in English). 40: 4570-4590. PMID 12404359 DOI: 10.1002/1521-3773(20011217)40:24<4570::AID-ANIE4570>3.0.CO;2-4  1
2001 Machonkin TE, Quintanar L, Palmer AE, Hassett R, Severance S, Kosman DJ, Solomon EI. Spectroscopy and reactivity of the type 1 copper site in Fet3p from Saccharomyces cerevisiae: correlation of structure with reactivity in the multicopper oxidases. Journal of the American Chemical Society. 123: 5507-17. PMID 11389633 DOI: 10.1021/ja003975s  1
1999 Xu F, Palmer AE, Yaver DS, Berka RM, Gambetta GA, Brown SH, Solomon EI. Targeted mutations in a Trametes villosa laccase. Axial perturbations of the T1 copper. The Journal of Biological Chemistry. 274: 12372-5. PMID 10212209 DOI: 10.1074/jbc.274.18.12372  1
1998 Xu F, Berka RM, Wahleithner JA, Nelson BA, Shuster JR, Brown SH, Palmer AE, Solomon EI. Site-directed mutations in fungal laccase: effect on redox potential, activity and pH profile. The Biochemical Journal. 334: 63-70. PMID 9693103 DOI: 10.1042/BJ3340063  0.92
1998 Solomon EI, Palmer AE, Sundaram UM, Machonkin TE. Spectroscopic Studies of O2 Intermediates in Copper Proteins: Electronic Structure Contributions to Function in Bioinorganic Chemistry Acs Symposium Series. 692: 423-452.  1
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