Brian Christopher O'Meara, Ph.D. - Publications

University of Tennessee, Knoxville, Knoxville, TN, United States 
evolution, phylogenetics

43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Beaulieu JM, O'Meara BC, Gilchrist MA. A spatially-explicit model of stabilizing selection for improving phylogenetic inference. Molecular Biology and Evolution. PMID 33306127 DOI: 10.1093/molbev/msaa318  1
2020 Landerer C, O'Meara BC, Zaretzki R, Gilchrist MA. Unlocking a signal of introgression from codons in Lachancea kluyveri using a mutation-selection model. Bmc Evolutionary Biology. 20: 109. PMID 32842959 DOI: 10.1186/S12862-020-01649-W  0.6
2020 Cope AL, O'Meara BC, Gilchrist MA. Gene expression of functionally-related genes coevolves across fungal species: detecting coevolution of gene expression using phylogenetic comparative methods. Bmc Genomics. 21: 370. PMID 32434474 DOI: 10.1186/S12864-020-6761-3  0.6
2020 Nguyen VD, Nguyen TH, Tayeen ASM, Laughinghouse HD, Sánchez-Reyes LL, Wiggins J, Pontelli E, Mozzherin D, O'Meara B, Stoltzfus A. Phylotastic: Improving Access to Tree-of-Life Knowledge With Flexible, on-the-Fly Delivery of Trees. Evolutionary Bioinformatics Online. 16: 1176934319899384. PMID 32372858 DOI: 10.1177/1176934319899384  1
2020 Jhwueng DC, O'Meara BC. On the Matrix Condition of Phylogenetic Tree. Evolutionary Bioinformatics Online. 16: 1176934320901721. PMID 32109980 DOI: 10.1177/1176934320901721  1
2019 Beaulieu JM, O'Meara BC. Diversity and skepticism are vital for comparative biology: a response to Donoghue and Edwards (2019). American Journal of Botany. PMID 31050366 DOI: 10.1002/Ajb2.1278  1
2018 Beaulieu JM, O'Meara BC, Zaretzki R, Landerer C, Chai J, Gilchrist MA. Population Genetics Based Phylogenetics Under Stabilizing Selection for an Optimal Amino Acid Sequence: A Nested Modeling Approach. Molecular Biology and Evolution. PMID 30521036 DOI: 10.1093/Molbev/Msy222  1
2018 Borstein SR, Fordyce JA, O'Meara BC, Wainwright PC, McGee MD. Reef fish functional traits evolve fastest at trophic extremes. Nature Ecology & Evolution. PMID 30478309 DOI: 10.1038/S41559-018-0725-X  1
2018 Caetano DS, O'Meara BC, Beaulieu JM. Hidden state models improve state-dependent diversification approaches, including biogeographical models. Evolution; International Journal of Organic Evolution. PMID 30226270 DOI: 10.1111/Evo.13602  1
2018 Beaulieu JM, O'Meara BC. Can we build it? Yes we can, but should we use it? Assessing the quality and value of a very large phylogeny of campanulid angiosperms. American Journal of Botany. 105: 417-432. PMID 29746717 DOI: 10.1002/Ajb2.1020  1
2016 O'Meara BC, Beaulieu JM. Past, future, and present of state-dependent models of diversification. American Journal of Botany. 103: 792-5. PMID 27208347 DOI: 10.3732/Ajb.1600012  1
2016 Beaulieu JM, O'Meara BC. Detecting hidden diversification shifts in models of trait-dependent speciation and extinction. Systematic Biology. PMID 27016728 DOI: 10.1093/sysbio/syw022  1
2015 Aldrovandi MS, Johnson JE, O'Meara BC, Petersen RH, Hughes KW. The Xeromphalina campanella/kauffmanii complex: species delineation and biogeographical patterns of speciation. Mycologia. PMID 26297781 DOI: 10.3852/15-087  1
2015 Zanne AE, Tank DC, Cornwell WK, Eastman JM, Smith SA, FitzJohn RG, McGlinn DJ, O'Meara BC, Moles AT, Reich PB, Royer DL, Soltis DE, Stevens PF, Westoby M, Wright IJ, et al. Zanne et al. reply. Nature. 521: E6-7. PMID 25993971 DOI: 10.1038/Nature14394  1
2015 Zanne AE, Tank DC, Cornwell WK, Eastman JM, Smith SA, FitzJohn RG, McGlinn DJ, O'Meara BC, Moles AT, Reich PB, Royer DL, Soltis DE, Stevens PF, Westoby M, Wright IJ, et al. Corrigendum: Three keys to the radiation of angiosperms into freezing environments. Nature. 521: 380. PMID 25993966 DOI: 10.1038/Nature14371  1
2015 Beaulieu JM, O'Meara BC, Crane P, Donoghue MJ. Heterogeneous Rates of Molecular Evolution and Diversification Could Explain the Triassic Age Estimate for Angiosperms. Systematic Biology. PMID 25944476 DOI: 10.1093/Sysbio/Syv027  1
2015 Beaulieu JM, O'Meara BC. Extinction can be estimated from moderately sized molecular phylogenies. Evolution; International Journal of Organic Evolution. 69: 1036-43. PMID 25639334 DOI: 10.1111/Evo.12614  1
2014 Banbury BL, O'Meara BC. Reol: R interface to the Encyclopedia of Life. Ecology and Evolution. 4: 2577-83. PMID 25360287 DOI: 10.1002/Ece3.1109  1
2014 Jhwueng DC, Huzurbazar S, O'Meara BC, Liu L. Investigating the performance of AIC in selecting phylogenetic models. Statistical Applications in Genetics and Molecular Biology. 13: 459-75. PMID 24867284 DOI: 10.1515/sagmb-2013-0048  1
2014 Williams JH, Taylor ML, O'Meara BC. Repeated evolution of tricellular (and bicellular) pollen. American Journal of Botany. 101: 559-71. PMID 24663667 DOI: 10.3732/Ajb.1300423  1
2014 Zanne AE, Tank DC, Cornwell WK, Eastman JM, Smith SA, FitzJohn RG, McGlinn DJ, O'Meara BC, Moles AT, Reich PB, Royer DL, Soltis DE, Stevens PF, Westoby M, Wright IJ, et al. Three keys to the radiation of angiosperms into freezing environments. Nature. 506: 89-92. PMID 24362564 DOI: 10.1038/Nature12872  1
2014 Cornwell WK, Westoby M, Falster DS, Fitzjohn RG, O'Meara BC, Pennell MW, McGlinn DJ, Eastman JM, Moles AT, Reich PB, Tank DC, Wright IJ, Aarssen L, Beaulieu JM, Kooyman RM, et al. Functional distinctiveness of major plant lineages Journal of Ecology. 102: 345-356. DOI: 10.1111/1365-2745.12208  1
2014 Beaulieu JM, O’meara BC. Hidden markov models for studying the evolution of binary morphological characters Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology. 395-408. DOI: 10.1007/978-3-662-43550-2_16  0.44
2014 O’meara BC, Beaulieu JM. Modelling stabilizing selection: The attraction of ornstein-uhlenbeck models Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology. 381-393. DOI: 10.1007/978-3-662-43550-2_15  0.6
2013 Beaulieu JM, O'Meara BC, Donoghue MJ. Identifying hidden rate changes in the evolution of a binary morphological character: the evolution of plant habit in campanulid angiosperms. Systematic Biology. 62: 725-37. PMID 23676760 DOI: 10.1093/Sysbio/Syt034  1
2013 Stoltzfus A, Lapp H, Matasci N, Deus H, Sidlauskas B, Zmasek CM, Vaidya G, Pontelli E, Cranston K, Vos R, Webb CO, Harmon LJ, Pirrung M, O'Meara B, Pennell MW, et al. Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. Bmc Bioinformatics. 14: 158. PMID 23668630 DOI: 10.1186/1471-2105-14-158  1
2013 Soltis DE, Mort ME, Latvis M, Mavrodiev EV, O'Meara BC, Soltis PS, Burleigh JG, Rubio de Casas R. Phylogenetic relationships and character evolution analysis of Saxifragales using a supermatrix approach. American Journal of Botany. 100: 916-29. PMID 23629845 DOI: 10.3732/Ajb.1300044  1
2013 Darrin Hulsey C, Keck BP, Alamillo H, O'Meara BC. Mitochondrial genome primers for Lake Malawi cichlids. Molecular Ecology Resources. 13: 347-53. PMID 23347464 DOI: 10.1111/1755-0998.12066  1
2012 Stoltzfus A, O'Meara B, Whitacre J, Mounce R, Gillespie EL, Kumar S, Rosauer DF, Vos RA. Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis. Bmc Research Notes. 5: 574. PMID 23088596 DOI: 10.1186/1756-0500-5-574  1
2012 Smith SA, O'Meara BC. treePL: divergence time estimation using penalized likelihood for large phylogenies. Bioinformatics (Oxford, England). 28: 2689-90. PMID 22908216 DOI: 10.1093/Bioinformatics/Bts492  1
2012 Beaulieu JM, Jhwueng DC, Boettiger C, O'Meara BC. Modeling stabilizing selection: expanding the Ornstein-Uhlenbeck model of adaptive evolution. Evolution; International Journal of Organic Evolution. 66: 2369-83. PMID 22834738 DOI: 10.1111/J.1558-5646.2012.01619.X  1
2012 O'Meara BC. Evolutionary inferences from phylogenies: A review of methods Annual Review of Ecology, Evolution, and Systematics. 43: 267-285. DOI: 10.1146/Annurev-Ecolsys-110411-160331  1
2011 Goff SA, Vaughn M, McKay S, Lyons E, Stapleton AE, Gessler D, Matasci N, Wang L, Hanlon M, Lenards A, Muir A, Merchant N, Lowry S, Mock S, Helmke M, et al. The iPlant Collaborative: Cyberinfrastructure for Plant Biology. Frontiers in Plant Science. 2: 34. PMID 22645531 DOI: 10.3389/Fpls.2011.00034  1
2011 Abercrombie JM, O'Meara BC, Moffatt AR, Williams JH. Developmental evolution of flowering plant pollen tube cell walls: callose synthase (CalS) gene expression patterns. Evodevo. 2: 14. PMID 21722365 DOI: 10.1186/2041-9139-2-14  1
2011 Stoltzfus A, O'Meara B, Whitacre J, Mounce R, Rosauer D, Vos R. Publishing re-usable phylogenetic trees, in theory and practice Nature Precedings. DOI: 10.1038/Npre.2011.6048.1  1
2010 O'Meara BC. New heuristic methods for joint species delimitation and species tree inference. Systematic Biology. 59: 59-73. PMID 20525620 DOI: 10.1093/Sysbio/Syp077  1
2010 Collar DC, Schulte JA, O'Meara BC, Losos JB. Habitat use affects morphological diversification in dragon lizards. Journal of Evolutionary Biology. 23: 1033-49. PMID 20345808 DOI: 10.1111/J.1420-9101.2010.01971.X  1
2009 Smith SA, O'Meara BC. Morphogenera, monophyly, and macroevolution. Proceedings of the National Academy of Sciences of the United States of America. 106: E97-8; author reply . PMID 19805242 DOI: 10.1073/Pnas.0906918106  1
2009 Collar DC, O'Meara BC, Wainwright PC, Near TJ. Piscivory limits diversification of feeding morphology in centrarchid fishes. Evolution; International Journal of Organic Evolution. 63: 1557-73. PMID 19154390 DOI: 10.1111/J.1558-5646.2009.00626.X  1
2007 McBride CS, Arguello JR, O'Meara BC. Five Drosophila genomes reveal nonneutral evolution and the signature of host specialization in the chemoreceptor superfamily. Genetics. 177: 1395-416. PMID 18039874 DOI: 10.1534/Genetics.107.078683  0.56
2006 O'Meara BC, Ané C, Sanderson MJ, Wainwright PC. Testing for different rates of continuous trait evolution using likelihood. Evolution; International Journal of Organic Evolution. 60: 922-33. PMID 16817533 DOI: 10.1554/05-130.1  1
2004 Driskell AC, Ané C, Burleigh JG, McMahon MM, O'meara BC, Sanderson MJ. Prospects for building the tree of life from large sequence databases. Science (New York, N.Y.). 306: 1172-4. PMID 15539599 DOI: 10.1126/Science.1102036  1
2001 Farrell BD, Sequeira AS, O'Meara BC, Normark BB, Chung JH, Jordal BH. The evolution of agriculture in beetles (Curculionidae: Scolytinae and Platypodinae). Evolution; International Journal of Organic Evolution. 55: 2011-27. PMID 11761062 DOI: 10.1111/J.0014-3820.2001.Tb01318.X  0.56
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