James Benjamin Ames - Publications

Affiliations: 
1998-2006 University of Maryland, College Park, College Park, MD 
 2006- University of California, Davis, Davis, CA 
Area:
Molecular Biology, Biochemistry
Website:
https://chemistry.ucdavis.edu/people/james-ames

144 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Cudia D, Roseman GP, Assafa TE, Shahu MK, Scholten A, Menke-Sell SK, Yamada H, Koch KW, Milhauser G, Ames JB. NMR and EPR-DEER Structure of a Dimeric Guanylate Cyclase Activator Protein-5 from Zebrafish Photoreceptors. Biochemistry. 60: 3058-3070. PMID 34609135 DOI: 10.1021/acs.biochem.1c00612  1
2021 Zhang Y, Fang X, Ascota L, Li L, Guerra L, Vega A, Salinas A, Gonzalez A, Garza C, Tsin A, Hell JW, Ames JB. Zinc-chelating PSD-95 N-terminus Impairs Its Palmitoyl Modification. Protein Science : a Publication of the Protein Society. PMID 34538002 DOI: 10.1002/pro.4187  1
2021 Zhang Y, Hell JW, Ames JB. Chemical shift assignments of the N-terminal domain of PSD95 (PSD95-NT). Biomolecular Nmr Assignments. PMID 33929702 DOI: 10.1007/s12104-021-10028-5  1
2021 Yu Q, Anderson DE, Kaur R, Fisher AJ, Ames JB. The Crystal Structure of Calmodulin Bound to the Cardiac Ryanodine Receptor (RyR2) at Residues Phe4246-Val4270 Reveals a Fifth Calcium Binding Site. Biochemistry. PMID 33754699 DOI: 10.1021/acs.biochem.1c00152  1
2021 Kirpich JS, Chang CW, Franse J, Yu Q, Escobar FV, Jenkins AJ, Martin SS, Narikawa R, Ames JB, Lagarias JC, Larsen DS. Comparison of the Forward and Reverse Photocycle Dynamics of Two Highly Similar Canonical Red/Green Cyanobacteriochromes Reveals Unexpected Differences. Biochemistry. PMID 33439010 DOI: 10.1021/acs.biochem.0c00796  1
2020 Turner M, Anderson DE, Bartels P, Nieves-Cintron M, Coleman AM, Henderson PB, Man KNM, Tseng PY, Yarov-Yarovoy V, Bers DM, Navedo MF, Horne MC, Ames JB, Hell JW. α-Actinin-1 promotes activity of the L-type Ca channel Ca1.2. The Embo Journal. 39: e106171. PMID 33433005 DOI: 10.15252/embj.2020106171  1
2020 Silva A, Xiao W, Wang Y, Wang W, Chang HW, Ames JB, Lam KS, Zhang Y. Structure-Activity Relationship of RGD-Containing Cyclic Octapeptide and αvβ3 Integrin Allows for Rapid Identification of a New Peptide Antagonist. International Journal of Molecular Sciences. 21. PMID 32349271 DOI: 10.3390/ijms21093076  1
2020 Turner M, Anderson DE, Bartels P, Nieves-Cintron M, Coleman AM, Henderson PB, Man KNM, Tseng PY, Yarov-Yarovoy V, Bers DM, Navedo MF, Horne MC, Ames JB, Hell JW. α-Actinin-1 promotes activity of the L-type Ca channel Ca 1.2. The Embo Journal. e102622. PMID 31985069 DOI: 10.15252/Embj.2019102622  1
2019 Soma S, Morgada MN, Naik MT, Boulet A, Roesler AA, Dziuba N, Ghosh A, Yu Q, Lindahl PA, Ames JB, Leary SC, Vila AJ, Gohil VM. COA6 Is Structurally Tuned to Function as a Thiol-Disulfide Oxidoreductase in Copper Delivery to Mitochondrial Cytochrome c Oxidase. Cell Reports. 29: 4114-4126.e5. PMID 31851937 DOI: 10.1016/J.Celrep.2019.11.054  1
2019 Salveson I, Anderson DE, Hell JW, Ames JB. Chemical shift assignments of a calmodulin intermediate with two Ca bound in complex with the IQ-motif of voltage-gated Ca channels (Ca1.2). Biomolecular Nmr Assignments. PMID 30788773 DOI: 10.1007/S12104-019-09883-0  1
2019 Cudia D, Ames JB. Chemical shift assignments of retinal guanylyl cyclase activating protein 5 (GCAP5). Biomolecular Nmr Assignments. PMID 30706384 DOI: 10.1007/S12104-019-09877-Y  1
2018 Peshenko IV, Yu Q, Lim S, Cudia D, Dizhoor AM, Ames JB. Retinal degeneration 3 (RD3) protein, a retinal guanylyl cyclase regulator, forms a monomeric and elongated four helix bundle. The Journal of Biological Chemistry. PMID 30559291 DOI: 10.1074/jbc.RA118.006106  1
2018 Ames JB. Dimerization of Neuronal Calcium Sensor Proteins. Frontiers in Molecular Neuroscience. 11: 397. PMID 30450035 DOI: 10.3389/Fnmol.2018.00397  0.01
2018 Lim S, Yu Q, Gottlieb SM, Chang CW, Rockwell NC, Martin SS, Madsen D, Lagarias JC, Larsen DS, Ames JB. Correlating structural and photochemical heterogeneity in cyanobacteriochrome NpR6012g4. Proceedings of the National Academy of Sciences of the United States of America. 115: 4387-4392. PMID 29632180 DOI: 10.1073/Pnas.1720682115  1
2018 Lim S, Roseman G, Peshenko I, Manchala G, Cudia D, Dizhoor AM, Millhauser G, Ames JB. Retinal guanylyl cyclase activating protein 1 forms a functional dimer. Plos One. 13: e0193947. PMID 29513743 DOI: 10.1371/Journal.Pone.0193947  1
2018 Matt L, Kim K, Hergarden AC, Patriarchi T, Malik ZA, Park DK, Chowdhury D, Buonarati OR, Henderson PB, Gökçek Saraç Ç, Zhang Y, Mohapatra D, Horne MC, Ames JB, Hell JW. α-Actinin Anchors PSD-95 at Postsynaptic Sites. Neuron. 97: 1094-1109.e9. PMID 29429936 DOI: 10.1016/J.Neuron.2018.01.036  1
2018 Lim S, Cudia D, Yu Q, Peshenko I, Dizhoor AM, Ames JB. Chemical shift assignments of retinal degeneration 3 protein (RD3). Biomolecular Nmr Assignments. 12: 167-170. PMID 29327102 DOI: 10.1007/s12104-018-9802-y  1
2018 Chowdhury D, Turner M, Patriarchi T, Hergarden AC, Anderson D, Zhang Y, Sun J, Chen CY, Ames JB, Hell JW. Ca/calmodulin binding to PSD-95 mediates homeostatic synaptic scaling down. The Embo Journal. 37: 122-138. PMID 29118000 DOI: 10.15252/Embj.201695829  1
2018 Haider SJ, Siegel AH, Spratt KF, Ames JB, Graham JA, Cheung YY. Detection of femoroplasty on pre- and post-arthroscopic comparison radiographs following treatment of femoroacetabular impingement syndrome: multi-reader accuracy and agreement study. Skeletal Radiology. 47: 233-242. PMID 29110048 DOI: 10.1007/s00256-017-2789-0  0.01
2017 Lim S, Scholten A, Manchala G, Cudia D, Zlomke-Sell SK, Koch KW, Ames JB. Structural Characterization of Ferrous Ion Binding to Retinal Guanylate Cyclase Activator Protein 5 from Zebrafish Photoreceptors. Biochemistry. 56: 6652-6661. PMID 29172459 DOI: 10.1021/Acs.Biochem.7B01029  1
2017 Reeves RA, DeWolf MC, Shaughnessy PJ, Ames JB, Henderson ER. Use of minimally invasive spine surgical instruments for the treatment of bone tumors. Expert Review of Medical Devices. 14: 881-890. PMID 28958177 DOI: 10.1080/17434440.2017.1386549  0.01
2017 Li Z, Zhang Y, Hedman AC, Ames JB, Sacks DB. Calmodulin Lobes Facilitate Dimerization and Activation of Estrogen Receptor-α. The Journal of Biological Chemistry. 292: 4614-4622. PMID 28174300 DOI: 10.1074/Jbc.M116.754804  1
2016 Li C, Lim S, Braunewell KH, Ames JB. Structure and Calcium Binding Properties of a Neuronal Calcium-Myristoyl Switch Protein, Visinin-Like Protein 3. Plos One. 11: e0165921. PMID 27820860 DOI: 10.1371/Journal.Pone.0165921  1
2016 Turner M, Anderson DE, Rajan S, Hell JW, Ames JB. Chemical shift assignments of the C-terminal EF-hand domain of α-actinin-1. Biomolecular Nmr Assignments. 10: 219-22. PMID 26861220 DOI: 10.1007/S12104-016-9670-2  1
2016 Wang Y, Xiao W, Zhang Y, Meza L, Tseng H, Takada Y, Ames JB, Lam KS. Optimization of RGD-Containing Cyclic Peptides against αvβ3 Integrin. Molecular Cancer Therapeutics. 15: 232-40. PMID 26719578 DOI: 10.1158/1535-7163.Mct-15-0544  1
2016 Lim S, Peshenko IV, Olshevskaya EV, Dizhoor AM, Ames JB. Structure of Guanylyl Cyclase Activator Protein 1 (GCAP1) Mutant V77E in a Ca2+-free/Mg2+-bound Activator State. The Journal of Biological Chemistry. 291: 4429-41. PMID 26703466 DOI: 10.1074/jbc.M115.696161  1
2016 Lim S, Yu Q, Rockwell NC, Martin SS, Lagarias JC, Ames JB. 1H, 13C, and 15N chemical shift assignments of cyanobacteriochrome NpR6012g4 in the green-absorbing photoproduct state. Biomolecular Nmr Assignments. 10: 157-61. PMID 26537963 DOI: 10.1007/S12104-015-9657-4  1
2016 Yu Q, Lim S, Rockwell NC, Martin SS, Clark Lagarias J, Ames JB. 1H, 15N, and 13C chemical shift assignments of cyanobacteriochrome NpR6012g4 in the red-absorbing dark state. Biomolecular Nmr Assignments. 10: 139-42. PMID 26482922 DOI: 10.1007/S12104-015-9653-8  1
2016 Turner M, Ames J. actinin-1 EF hand 3,4 Bound to Cav1.2 IQ Motif Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr25902  1
2015 Maric D, Olson CL, Xu X, Ames JB, Engman DM. Calcium-dependent membrane association of a flagellar calcium sensor does not require calcium binding. Molecular and Biochemical Parasitology. 201: 72-75. PMID 26099941 DOI: 10.1016/J.Molbiopara.2015.06.003  1
2015 Rockwell NC, Martin SS, Lim S, Lagarias JC, Ames JB. Characterization of Red/Green Cyanobacteriochrome NpR6012g4 by Solution Nuclear Magnetic Resonance Spectroscopy: A Hydrophobic Pocket for the C15-E,anti Chromophore in the Photoproduct. Biochemistry. 54: 3772-83. PMID 25989712 DOI: 10.1021/Acs.Biochem.5B00438  1
2015 Rockwell NC, Martin SS, Lim S, Lagarias JC, Ames JB. Characterization of Red/Green Cyanobacteriochrome NpR6012g4 by Solution Nuclear Magnetic Resonance Spectroscopy: A Protonated Bilin Ring System in Both Photostates. Biochemistry. 54: 2581-600. PMID 25843271 DOI: 10.1021/Bi501548T  1
2015 Nepomuceno GM, Chan KM, Huynh V, Martin KS, Moore JT, O'Brien TE, Pollo LA, Sarabia FJ, Tadeus C, Yao Z, Anderson DE, Ames JB, Shaw JT. Synthesis and Evaluation of Quinazolines as Inhibitors of the Bacterial Cell Division Protein FtsZ. Acs Medicinal Chemistry Letters. 6: 308-12. PMID 25815151 DOI: 10.1021/Ml500497S  1
2015 Turner M, Zhang Y, Carlson HL, Stadler HS, Ames JB. Chemical shift assignments of mouse HOXD13 DNA binding domain bound to duplex DNA. Biomolecular Nmr Assignments. 9: 267-70. PMID 25491407 DOI: 10.1007/s12104-014-9589-4  1
2014 Park S, Li C, Haeseleer F, Palczewski K, Ames JB. Structural insights into activation of the retinal L-type Ca²⁺ channel (Cav1.4) by Ca²⁺-binding protein 4 (CaBP4). The Journal of Biological Chemistry. 289: 31262-73. PMID 25258313 DOI: 10.1074/Jbc.M114.604439  1
2014 Lim S, Rockwell NC, Martin SS, Dallas JL, Lagarias JC, Ames JB. Photoconversion changes bilin chromophore conjugation and protein secondary structure in the violet/orange cyanobacteriochrome NpF2164g3' [corrected]. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 13: 951-62. PMID 24745038 DOI: 10.1039/C3Pp50442E  1
2014 Zhang Y, Matt L, Patriarchi T, Malik ZA, Chowdhury D, Park DK, Renieri A, Ames JB, Hell JW. Capping of the N-terminus of PSD-95 by calmodulin triggers its postsynaptic release. The Embo Journal. 33: 1341-53. PMID 24705785 DOI: 10.1002/Embj.201488126  1
2014 Lim S, Dizhoor AM, Ames JB. Structural diversity of neuronal calcium sensor proteins and insights for activation of retinal guanylyl cyclase by GCAP1. Frontiers in Molecular Neuroscience. 7: 19. PMID 24672427 DOI: 10.3389/fnmol.2014.00019  1
2014 Peshenko IV, Olshevskaya EV, Lim S, Ames JB, Dizhoor AM. Identification of target binding site in photoreceptor guanylyl cyclase-activating protein 1 (GCAP1). The Journal of Biological Chemistry. 289: 10140-54. PMID 24567338 DOI: 10.1074/jbc.M113.540716  1
2014 Park S, Li C, Ames JB. ¹H, ¹⁵N, and ¹³C chemical shift assignments of murine calcium-binding protein 4. Biomolecular Nmr Assignments. 8: 361-4. PMID 23925854 DOI: 10.1007/s12104-013-9517-z  1
2014 Lim S, Rockwell NC, Martin SS, Lagarias JC, Ames JB. ¹H, ¹⁵N, and ¹³C chemical shift assignments of cyanobacteriochrome NpF2164g3 in the photoproduct state. Biomolecular Nmr Assignments. 8: 259-62. PMID 23749453 DOI: 10.1007/S12104-013-9496-0  1
2014 Li C, Ames JB. ¹H, ¹³C, and ¹⁵N chemical shift assignments of neuronal calcium sensor protein, hippocalcin. Biomolecular Nmr Assignments. 8: 63-6. PMID 23250791 DOI: 10.1007/s12104-012-9453-3  1
2014 Zhang Y, Ames J. Backbone 1H, 13C, 15N resonance assignments of calcium-bound calmodulin in complex with PSD95 N-terminal peptide Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Mes/Pdb  1
2013 Lim S, Peshenko IV, Dizhoor AM, Ames JB. Structural insights for activation of retinal guanylate cyclase by GCAP1. Plos One. 8: e81822. PMID 24236217 DOI: 10.1371/journal.pone.0081822  1
2013 Myers WK, Xu X, Li C, Lagerstedt JO, Budamagunta MS, Voss JC, Britt RD, Ames JB. Double electron-electron resonance probes Ca²⁺-induced conformational changes and dimerization of recoverin. Biochemistry. 52: 5800-8. PMID 23906368 DOI: 10.1021/Bi400538W  1
2013 Li C, Enomoto M, Rossi AM, Seo MD, Rahman T, Stathopulos PB, Taylor CW, Ikura M, Ames JB. CaBP1, a neuronal Ca2+ sensor protein, inhibits inositol trisphosphate receptors by clamping intersubunit interactions. Proceedings of the National Academy of Sciences of the United States of America. 110: 8507-12. PMID 23650371 DOI: 10.1073/pnas.1220847110  1
2013 Lim S, Peshenko IV, Dizhoor AM, Ames JB. Backbone (1)H, (13)C, and (15)N resonance assignments of guanylyl cyclase activating protein-1, GCAP1. Biomolecular Nmr Assignments. 7: 39-42. PMID 22392341 DOI: 10.1007/s12104-012-9373-2  1
2013 Xu X, Olson CL, Engman DM, Ames JB. (1)H, (15)N, and (13)C chemical shift assignments of the calflagin Tb24 flagellar calcium binding protein of Trypanosoma brucei. Biomolecular Nmr Assignments. 7: 9-12. PMID 22382573 DOI: 10.1007/S12104-012-9366-1  1
2013 Lim S, Rockwell NC, Martin SS, Lagarias JC, Ames JB. 1H, 15N, and 13C chemical shift assignments of cyanobacteriochrome NpF2164g3 in the photoproduct state Biomolecular Nmr Assignments. 1-4. DOI: 10.1007/s12104-013-9496-0  1
2012 Kim MB, O'Brien TE, Moore JT, Anderson DE, Foss MH, Weibel DL, Ames JB, Shaw JT. The Synthesis and Antimicrobial Activity of Heterocyclic Derivatives of Totarol. Acs Medicinal Chemistry Letters. 3: 818-822. PMID 23119123 DOI: 10.1021/Ml3001775  1
2012 Ames JB, Horan MP, Van der Meijden OA, Leake MJ, Millett PJ. Association between acromial index and outcomes following arthroscopic repair of full-thickness rotator cuff tears. The Journal of Bone and Joint Surgery. American Volume. 94: 1862-9. PMID 23079878 DOI: 10.2106/JBJS.K.01500  1
2012 Xu X, Olson CL, Engman DM, Ames JB. NMR structure of the calflagin Tb24 flagellar calcium binding protein of Trypanosoma brucei. Protein Science : a Publication of the Protein Society. 21: 1942-7. PMID 23011904 DOI: 10.1002/Pro.2167  1
2012 Anderson DE, Kim MB, Moore JT, O'Brien TE, Sorto NA, Grove CI, Lackner LL, Ames JB, Shaw JT. Comparison of small molecule inhibitors of the bacterial cell division protein FtsZ and identification of a reliable cross-species inhibitor. Acs Chemical Biology. 7: 1918-28. PMID 22958099 DOI: 10.1021/Cb300340J  1
2012 Sugiarto G, Lau K, Qu J, Li Y, Lim S, Mu S, Ames JB, Fisher AJ, Chen X. A sialyltransferase mutant with decreased donor hydrolysis and reduced sialidase activities for directly sialylating LewisX. Acs Chemical Biology. 7: 1232-40. PMID 22583967 DOI: 10.1021/Cb300125K  1
2012 Peshenko IV, Olshevskaya EV, Lim S, Ames JB, Dizhoor AM. Calcium-myristoyl Tug is a new mechanism for intramolecular tuning of calcium sensitivity and target enzyme interaction for guanylyl cyclase-activating protein 1: dynamic connection between N-fatty acyl group and EF-hand controls calcium sensitivity. The Journal of Biological Chemistry. 287: 13972-84. PMID 22383530 DOI: 10.1074/Jbc.M112.341883  1
2012 Ames JB, Lim S, Ikura M. Molecular structure and target recognition of neuronal calcium sensor proteins. Frontiers in Molecular Neuroscience. 5: 10. PMID 22363261 DOI: 10.3389/Fnmol.2012.00010  1
2012 Seo MD, Velamakanni S, Ishiyama N, Stathopulos PB, Rossi AM, Khan SA, Dale P, Li C, Ames JB, Ikura M, Taylor CW. Structural and functional conservation of key domains in InsP3 and ryanodine receptors. Nature. 483: 108-12. PMID 22286060 DOI: 10.1038/nature10751  1
2012 Zhang Y, Li Z, Sacks DB, Ames JB. Structural basis for Ca2+-induced activation and dimerization of estrogen receptor α by calmodulin. The Journal of Biological Chemistry. 287: 9336-44. PMID 22275375 DOI: 10.1074/Jbc.M111.334797  1
2012 Ames JB, Lim S. Molecular structure and target recognition of neuronal calcium sensor proteins. Biochimica Et Biophysica Acta. 1820: 1205-13. PMID 22020049 DOI: 10.1016/J.Bbagen.2011.10.003  1
2012 Ames J. NMR assignments for TB24 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr18011  0.04
2012 Briggs KK, Willimon SC, Ames J, Herzog MM, Philippon MJ. Paper 34: Hip Arthroscopy in the Adult Dysplastic Hip Arthroscopy: the Journal of Arthroscopic & Related Surgery. 28: e63. DOI: 10.1016/j.arthro.2012.04.040  0.01
2011 Wang CK, Simon A, Jessen CM, Oliveira CL, Mack L, Braunewell KH, Ames JB, Pedersen JS, Hofmann A. Divalent cations and redox conditions regulate the molecular structure and function of visinin-like protein-1. Plos One. 6: e26793. PMID 22073194 DOI: 10.1371/Journal.Pone.0026793  1
2011 Ames JB. Choosing a fellowship. American Journal of Orthopedics (Belle Mead, N.J.). 40: E196-7. PMID 22022686  0.01
2011 Ames JB, Millett PJ. Combined posterior osseous Bankart lesion and posterior humeral avulsion of the glenohumeral ligaments: a case report and pathoanatomic subtyping of "floating" posterior inferior glenohumeral ligament lesions. The Journal of Bone and Joint Surgery. American Volume. 93: e118(1)-(4). PMID 22012535 DOI: 10.2106/JBJS.K.00010  1
2011 Zhang Y, Larsen CA, Stadler HS, Ames JB. Structural basis for sequence specific DNA binding and protein dimerization of HOXA13. Plos One. 6: e23069. PMID 21829694 DOI: 10.1371/Journal.Pone.0023069  1
2011 Park S, Li C, Ames JB. Nuclear magnetic resonance structure of calcium-binding protein 1 in a Ca(2+) -bound closed state: implications for target recognition. Protein Science : a Publication of the Protein Society. 20: 1356-66. PMID 21608059 DOI: 10.1002/Pro.662  1
2011 Xu X, Ishima R, Ames JB. Conformational dynamics of recoverin's Ca2+-myristoyl switch probed by 15N NMR relaxation dispersion and chemical shift analysis. Proteins. 79: 1910-22. PMID 21465563 DOI: 10.1002/Prot.23014  1
2011 Lim S, Strahl T, Thorner J, Ames JB. Structure of a Ca2+-myristoyl switch protein that controls activation of a phosphatidylinositol 4-kinase in fission yeast. The Journal of Biological Chemistry. 286: 12565-77. PMID 21288895 DOI: 10.1074/Jbc.M110.208868  1
2011 Li C, Pan W, Braunewell KH, Ames JB. Structural analysis of Mg2+ and Ca2+ binding, myristoylation, and dimerization of the neuronal calcium sensor and visinin-like protein 1 (VILIP-1). The Journal of Biological Chemistry. 286: 6354-66. PMID 21169352 DOI: 10.1074/Jbc.M110.173724  1
2011 Xu W, Xu X, Leal WS, Ames JB. Extrusion of the C-terminal helix in navel orangeworm moth pheromone-binding protein (AtraPBP1) controls pheromone binding. Biochemical and Biophysical Research Communications. 404: 335-8. PMID 21130734 DOI: 10.1016/J.Bbrc.2010.11.119  1
2010 Mao Y, Xu X, Xu W, Ishida Y, Leal WS, Ames JB, Clardy J. Crystal and solution structures of an odorant-binding protein from the southern house mosquito complexed with an oviposition pheromone. Proceedings of the National Academy of Sciences of the United States of America. 107: 19102-7. PMID 20956299 DOI: 10.1073/Pnas.1012274107  1
2010 Ames JB, Lurie JD, Tomek IM, Zhou W, Koval KJ. Does surgeon volume for total hip arthroplasty affect outcomes after hemiarthroplasty for femoral neck fracture? American Journal of Orthopedics (Belle Mead, N.J.). 39: E84-9. PMID 20882210  0.01
2010 Kohler AC, Gae DD, Richley MA, Stoll S, Gunn A, Lim S, Martin SS, Doukov TI, Britt RD, Ames JB, Lagarias JC, Fisher AJ. Structural basis for hydration dynamics in radical stabilization of bilin reductase mutants. Biochemistry. 49: 6206-18. PMID 20557110 DOI: 10.1021/Bi100728Q  1
2010 Park S, Li C, Ames JB. 1H, 15N, and 13C chemical shift assignments of calcium-binding protein 1 with Ca2+ bound at EF1, EF3 and EF4. Biomolecular Nmr Assignments. 4: 159-61. PMID 20503119 DOI: 10.1007/s12104-010-9235-8  1
2010 Zhang Y, Thornburg CK, Stadler HS, Ames JB. Backbone chemical shift assignments of mouse HOXA13 DNA binding domain bound to duplex DNA. Biomolecular Nmr Assignments. 4: 97-9. PMID 20232265 DOI: 10.1007/s12104-010-9216-y  1
2010 Valentine KG, Peterson RW, Saad JS, Summers MF, Xu X, Ames JB, Wand AJ. Reverse micelle encapsulation of membrane-anchored proteins for solution NMR studies. Structure (London, England : 1993). 18: 9-16. PMID 20152148 DOI: 10.1016/J.Str.2009.11.010  1
2010 Xu X, Xu W, Rayo J, Ishida Y, Leal WS, Ames JB. NMR structure of navel orangeworm moth pheromone-binding protein (AtraPBP1): implications for pH-sensitive pheromone detection. Biochemistry. 49: 1469-76. PMID 20088570 DOI: 10.1021/Bi9020132  1
2010 Hamasaki-Katagiri N, Ames JB. Neuronal calcium sensor-1 (Ncs1p) is up-regulated by calcineurin to promote Ca2+ tolerance in fission yeast. The Journal of Biological Chemistry. 285: 4405-14. PMID 20018864 DOI: 10.1074/Jbc.M109.058594  1
2009 Schenauer MR, Meissen JK, Seo Y, Ames JB, Leary JA. Heparan sulfate separation, sequencing, and isomeric differentiation: ion mobility spectrometry reveals specific iduronic and glucuronic acid-containing hexasaccharides. Analytical Chemistry. 81: 10179-85. PMID 19925012 DOI: 10.1021/Ac902186H  0.04
2009 Zhang Y, Thornburg CK, Stadler HS, Ames JB. (1)H, (15)N, and (13)C chemical shift assignments of mouse HOXA13 DNA binding domain. Biomolecular Nmr Assignments. 3: 199-201. PMID 19888690 DOI: 10.1007/s12104-009-9174-4  1
2009 Xu X, Xu W, Ishida Y, Li Y, Leal WS, Ames JB. (1)H, (15)N, and (13)C chemical shift assignments of the mosquito odorant binding protein-1 (CquiOBP1) bound to the mosquito oviposition pheromone. Biomolecular Nmr Assignments. 3: 195-7. PMID 19888689 DOI: 10.1007/S12104-009-9173-5  1
2009 Lim S, Ames JB. (1)H, (15)N, and (13)C chemical shift assignments of neuronal calcium sensor-1 homolog from fission yeast. Biomolecular Nmr Assignments. 3: 269-71. PMID 19851889 DOI: 10.1007/s12104-009-9191-3  1
2009 Leal WS, Ishida Y, Pelletier J, Xu W, Rayo J, Xu X, Ames JB. Olfactory proteins mediating chemical communication in the navel orangeworm moth, Amyelois transitella. Plos One. 4: e7235. PMID 19789654 DOI: 10.1371/Journal.Pone.0007235  1
2009 Saludes JP, Ames JB, Gervay-Hague J. Synthesis and structural characterization of sialic acid-glutamic acid hybrid foldamers as conformational surrogates of alpha-2,8-linked polysialic acid. Journal of the American Chemical Society. 131: 5495-505. PMID 19323529 DOI: 10.1021/Ja808286X  0.01
2009 Lim S, Peshenko I, Dizhoor A, Ames JB. Effects of Ca2+, Mg2+, and myristoylation on guanylyl cyclase activating protein 1 structure and stability. Biochemistry. 48: 850-62. PMID 19143494 DOI: 10.1021/Bi801897P  1
2009 Li C, Chan J, Haeseleer F, Mikoshiba K, Palczewski K, Ikura M, Ames JB. Structural insights into Ca2+-dependent regulation of inositol 1,4,5-trisphosphate receptors by CaBP1. The Journal of Biological Chemistry. 284: 2472-81. PMID 19008222 DOI: 10.1074/Jbc.M806513200  1
2009 Ames J. 1H, 13C, 15N Chemical shift assignments of A13 homeodomain Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr16252  0.04
2009 Ames J. Backbone assignments for odorant binding protein 1 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr16175  0.04
2008 Li C, Ames JB. 1H, 15N, and 13C chemical shift assignments of calcium-bound calcium-binding protein 1 (CaBP1). Biomolecular Nmr Assignments. 2: 61-3. PMID 19636926 DOI: 10.1007/s12104-008-9085-9  1
2008 Xu X, Li Y, Rayo J, Ishida Y, Leal W, Ames JB. 1H, 15N, and 13C Chemical shift assignments of the navel orange worm pheromone-binding protein-1 (Atra-PBP1). Biomolecular Nmr Assignments. 2: 105-6. PMID 19636880 DOI: 10.1007/S12104-008-9096-6  1
2008 Wingard JN, Ladner J, Vanarotti M, Fisher AJ, Robinson H, Buchanan KT, Engman DM, Ames JB. Structural insights into membrane targeting by the flagellar calcium-binding protein (FCaBP), a myristoylated and palmitoylated calcium sensor in Trypanosoma cruzi. The Journal of Biological Chemistry. 283: 23388-96. PMID 18559337 DOI: 10.1074/Jbc.M803178200  1
2008 Lusin JD, Vanarotti M, Li C, Valiveti A, Ames JB. NMR structure of DREAM: Implications for Ca(2+)-dependent DNA binding and protein dimerization. Biochemistry. 47: 2252-64. PMID 18201103 DOI: 10.1021/Bi7017267  1
2008 Ames J. Chemical shift assignments for Atra-PBP1 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr15601  0.04
2008 Ames J. NMR resonance assignments for Ca2+-bound DREAM Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr15561  0.01
2007 Li C, Ames JB. 1H, 15N, and 13C chemical shift assignments of calcium-binding protein 1 (CaBP1). Biomolecular Nmr Assignments. 1: 77-9. PMID 19636832 DOI: 10.1007/s12104-007-9019-y  1
2007 Strahl T, Huttner IG, Lusin JD, Osawa M, King D, Thorner J, Ames JB. Structural insights into activation of phosphatidylinositol 4-kinase (Pik1) by yeast frequenin (Frq1). The Journal of Biological Chemistry. 282: 30949-59. PMID 17720810 DOI: 10.1074/Jbc.M705499200  1
2007 Stathopulos PB, Ames JB, Ikura M. Structural aspects of calcium-binding proteins and their interactions with targets New Comprehensive Biochemistry. 41: 95-123. DOI: 10.1016/S0167-7306(06)41004-8  1
2006 Ames JB, Levay K, Wingard JN, Lusin JD, Slepak VZ. Structural basis for calcium-induced inhibition of rhodopsin kinase by recoverin. The Journal of Biological Chemistry. 281: 37237-45. PMID 17020884 DOI: 10.1074/Jbc.M606913200  1
2006 Stathopulos PB, Li GY, Plevin MJ, Ames JB, Ikura M. Stored Ca2+ depletion-induced oligomerization of stromal interaction molecule 1 (STIM1) via the EF-SAM region: An initiation mechanism for capacitive Ca2+ entry. The Journal of Biological Chemistry. 281: 35855-62. PMID 17020874 DOI: 10.1074/Jbc.M608247200  1
2006 Lin Y, Lusin JD, Ye D, Dunaway-Mariano D, Ames JB. Examination of the structure, stability, and catalytic potential in the engineered phosphoryl carrier domain of pyruvate phosphate dikinase. Biochemistry. 45: 1702-11. PMID 16460017 DOI: 10.1021/Bi051816L  1
2006 Ikura M, Ames JB. Genetic polymorphism and protein conformational plasticity in the calmodulin superfamily: two ways to promote multifunctionality. Proceedings of the National Academy of Sciences of the United States of America. 103: 1159-64. PMID 16432210 DOI: 10.1073/Pnas.0508640103  1
2005 Buchanan KT, Ames JB, Asfaw SH, Wingard JN, Olson CL, Campana PT, Araújo AP, Engman DM. A flagellum-specific calcium sensor. The Journal of Biological Chemistry. 280: 40104-11. PMID 16148003 DOI: 10.1074/Jbc.M505777200  1
2005 Wingard JN, Chan J, Bosanac I, Haeseleer F, Palczewski K, Ikura M, Ames JB. Structural analysis of Mg2+ and Ca2+ binding to CaBP1, a neuron-specific regulator of calcium channels. The Journal of Biological Chemistry. 280: 37461-70. PMID 16147998 DOI: 10.1074/Jbc.M508541200  1
2005 Ames JB, Vyas V, Lusin JD, Mariuzza R. NMR structure of the natural killer cell receptor 2B4 (CD244): implications for ligand recognition. Biochemistry. 44: 6416-23. PMID 15850375 DOI: 10.1021/Bi050139S  1
2005 Osawa M, Dace A, Tong KI, Valiveti A, Ikura M, Ames JB. Mg2+ and Ca2+ differentially regulate DNA binding and dimerization of DREAM. The Journal of Biological Chemistry. 280: 18008-14. PMID 15746104 DOI: 10.1074/Jbc.M500338200  1
2004 Zhu J, Stabler SM, Ames JB, Baskakov I, Monteiro MJ. Calcium binding sequences in calmyrin regulates interaction with presenilin-2. Experimental Cell Research. 300: 440-54. PMID 15475008 DOI: 10.1016/J.Yexcr.2004.07.020  0.01
2004 Hamasaki-Katagiri N, Molchanova T, Takeda K, Ames JB. Fission yeast homolog of neuronal calcium sensor-1 (Ncs1p) regulates sporulation and confers calcium tolerance. The Journal of Biological Chemistry. 279: 12744-54. PMID 14722091 DOI: 10.1074/Jbc.M311895200  1
2004 Monteiro MJ, Zhu J, Stabler SM, Ames JB. P3-200 Calcium-binding regulates calmyrin interaction with presenilin-2 Neurobiology of Aging. 25: S412. DOI: 10.1016/S0197-4580(04)81351-4  0.01
2003 Valentine KG, Mesleh MF, Opella SJ, Ikura M, Ames JB. Structure, topology, and dynamics of myristoylated recoverin bound to phospholipid bilayers. Biochemistry. 42: 6333-40. PMID 12767213 DOI: 10.1021/Bi0206816  1
2003 Huttner IG, Strahl T, Osawa M, King DS, Ames JB, Thorner J. Molecular interactions of yeast frequenin (Frq1) with the phosphatidylinositol 4-kinase isoform, Pik1. The Journal of Biological Chemistry. 278: 4862-74. PMID 12477731 DOI: 10.1074/Jbc.M207920200  1
2002 Ames JB, Ikura M. Structure and membrane-targeting mechanism of retinal Ca2+-binding proteins, recoverin and GCAP-2. Advances in Experimental Medicine and Biology. 514: 333-48. PMID 12596931 DOI: 10.1007/978-1-4615-0121-3_20  1
2002 Ikura M, Osawa M, Ames JB. The role of calcium-binding proteins in the control of transcription: structure to function. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 24: 625-36. PMID 12111723 DOI: 10.1002/Bies.10105  1
2002 Ames JB, Hamasaki N, Molchanova T. Structure and calcium-binding studies of a recoverin mutant (E85Q) in an allosteric intermediate state. Biochemistry. 41: 5776-87. PMID 11980481 DOI: 10.1021/Bi012153K  1
2002 Yap KL, Ames JB, Swindells MB, Ikura M. Vector geometry mapping. A method to characterize the conformation of helix-loop-helix calcium-binding proteins. Methods in Molecular Biology (Clifton, N.J.). 173: 317-24. PMID 11859772 DOI: 10.1385/1-59259-184-1:317  1
2002 Ames J, Hamasaki N, Molchanova T. 1H, 13C, and 15N Chemical Shift Assignments for E85Q recoverin Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr5332  1
2001 Osawa M, Tong KI, Lilliehook C, Wasco W, Buxbaum JD, Cheng HY, Penninger JM, Ikura M, Ames JB. Calcium-regulated DNA binding and oligomerization of the neuronal calcium-sensing protein, calsenilin/DREAM/KChIP3. The Journal of Biological Chemistry. 276: 41005-13. PMID 11535596 DOI: 10.1074/Jbc.M105842200  1
2001 Laskowski IA, Pratschke J, Wilhelm MJ, Paz D, Ames JB, Dong VM, Beato F, Sayegh MH, Hancock WW, Tilney NL. Prolongation of survival and preservation of allograft structure and function by a signaling CD28 mAB in a rat model of chronic kidney rejection. Transplantation Proceedings. 33: 567-8. PMID 11266961 DOI: 10.1016/S0041-1345(00)02145-X  0.01
2001 Tanaka T, Ames J, Kainosho M, Stryer L, Ikura M. Refinement of the Solution Structure of Calcium-Free, Myristoylated Recoverin Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr4030  1
2000 Ames JB, Hendricks KB, Strahl T, Huttner IG, Hamasaki N, Thorner J. Structure and calcium-binding properties of Frq1, a novel calcium sensor in the yeast Saccharomyces cerevisiae. Biochemistry. 39: 12149-61. PMID 11015193 DOI: 10.1021/Bi0012890  1
2000 Ames JB, Ikura M, Stryer L. Molecular structure of membrane-targeting calcium sensors in vision: recoverin and guanylate cyclase-activating protein 2. Methods in Enzymology. 316: 121-32. PMID 10800672 DOI: 10.1016/S0076-6879(00)16720-5  1
2000 Palczewski K, Polans AS, Baehr W, Ames JB. Ca2+-binding proteins in the retina: Structure, function, and the etiology of human visual diseases Bioessays. 22: 337-350. PMID 10723031 DOI: 10.1002/(Sici)1521-1878(200004)22:4<337::Aid-Bies4>3.0.Co;2-Z  1
1999 Yap KL, Ames JB, Swindells MB, Ikura M. Diversity of conformational states and changes within the EF-hand protein superfamily. Proteins. 37: 499-507. PMID 10591109 DOI: 10.1002/(Sici)1097-0134(19991115)37:3<499::Aid-Prot17>3.0.Co;2-Y  1
1999 Ames JB, Dizhoor AM, Ikura M, Palczewski K, Stryer L. Three-dimensional structure of guanylyl cyclase activating protein-2, a calcium-sensitive modulator of photoreceptor guanylyl cyclases. The Journal of Biological Chemistry. 274: 19329-37. PMID 10383444 DOI: 10.1074/Jbc.274.27.19329  1
1999 Baldwin AN, Ames JB. Core mutations that promote the calcium-induced allosteric transition of bovine recoverin. Biochemistry. 37: 17408-19. PMID 9860856 DOI: 10.1021/Bi980928S  0.01
1998 Tanaka T, Ames JB, Kainosho M, Stryer L, Ikura M. Differential isotype labeling strategy for determining the structure of myristoylated recoverin by NMR spectroscopy. Journal of Biomolecular Nmr. 11: 135-52. PMID 9679292 DOI: 10.1023/A:1008212316986  1
1998 Alattia JR, Ames JB, Porumb T, Tong KI, Heng YM, Ottensmeyer P, Kay CM, Ikura M. Lateral self-assembly of E-cadherin directed by cooperative calcium binding. Febs Letters. 417: 405-8. PMID 9409761 DOI: 10.1016/S0014-5793(97)01333-1  0.04
1997 Ames JB, Ishima R, Tanaka T, Gordon JI, Stryer L, Ikura M. Molecular mechanics of calcium-myristoyl switches. Nature. 389: 198-202. PMID 9296500 DOI: 10.1038/38310  1
1996 Ames JB, Tanaka T, Stryer L, Ikura M. Portrait of a myristoyl switch protein. Current Opinion in Structural Biology. 6: 432-8. PMID 8794166 DOI: 10.1016/S0959-440X(96)80106-0  1
1995 Ames JB, Tanaka T, Ikura M, Stryer L. Nuclear magnetic resonance evidence for Ca(2+)-induced extrusion of the myristoyl group of recoverin. The Journal of Biological Chemistry. 270: 30909-13. PMID 8537345 DOI: 10.1074/Jbc.270.52.30909  1
1995 Ames JB, Porumb T, Tanaka T, Ikura M, Stryer L. Amino-terminal myristoylation induces cooperative calcium binding to recoverin. The Journal of Biological Chemistry. 270: 4526-33. PMID 7876221 DOI: 10.1074/Jbc.270.9.4526  1
1995 Tanaka T, Ames JB, Harvey TS, Stryer L, Ikura M. Sequestration of the membrane-targeting myristoyl group of recoverin in the calcium-free state. Nature. 376: 444-7. PMID 7630423 DOI: 10.1038/376444A0  1
1994 Ames JB, Tanaka T, Stryer L, Ikura M. Secondary structure of myristoylated recoverin determined by three-dimensional heteronuclear NMR: implications for the calcium-myristoyl switch. Biochemistry. 33: 10743-53. PMID 8075075 DOI: 10.1021/Bi00201A023  1
1992 Ames JB, Ros M, Raap J, Lugtenburg J, Mathies RA. Time-resolved ultraviolet resonance Raman studies of protein structure: application to bacteriorhodopsin. Biochemistry. 31: 5328-34. PMID 1606157 DOI: 10.1021/Bi00138A012  1
1992 Ames JB, Raap J, Lugtenburg J, Mathies RA. Resonance Raman study of halorhodopsin photocycle kinetics, chromophore structure, and chloride-pumping mechanism. Biochemistry. 31: 12546-54. PMID 1472492 DOI: 10.1021/Bi00165A002  1
1991 Mathies RA, Lin SW, Ames JB, Pollard WT. From femtoseconds to biology: mechanism of bacteriorhodopsin's light-driven proton pump. Annual Review of Biophysics and Biophysical Chemistry. 20: 491-518. PMID 1867724 DOI: 10.1146/annurev.bb.20.060191.002423  1
1990 Ames JB, Mathies RA. The role of back-reactions and proton uptake during the N----O transition in bacteriorhodopsin's photocycle: a kinetic resonance Raman study. Biochemistry. 29: 7181-90. PMID 2169875 DOI: 10.1021/Bi00483A005  1
1990 Ames JB, Bolton SR, Netto MM, Mathies RA. Ultraviolet resonance Raman spectroscopy of bacteriorhodopsin: evidence against tyrosinate in the photocycle Journal of the American Chemical Society. 112: 9007-9009. DOI: 10.1021/Ja00180A071  0.01
1989 MacLeod G, Ames J. Soy flavor and its improvement. Critical Reviews in Food Science and Nutrition. 27: 219-400. PMID 3067980 DOI: 10.1080/10408398809527487  0.01
1989 Ames JB, Fodor SP, Gebhard R, Raap J, van den Berg EM, Lugtenburg J, Mathies RA. Bacteriorhodopsin's M412 intermediate contains a 13-cis, 14-s-trans, 15-anti-retinal Schiff base chromophore. Biochemistry. 28: 3681-7. PMID 2751988 DOI: 10.1021/Bi00435A009  1
1988 Fodor SP, Ames JB, Gebhard R, van den Berg EM, Stoeckenius W, Lugtenburg J, Mathies RA. Chromophore structure in bacteriorhodopsin's N intermediate: implications for the proton-pumping mechanism. Biochemistry. 27: 7097-101. PMID 2848578 DOI: 10.1021/Bi00418A064  1
1897 Ames JB. Can a Murderer Acquire Title by His Crime and Keep It? The American Law Register and Review. 45: 225. DOI: 10.2307/3306067  0.01
1890 Ames JB. The Disseisin of Chattels. II. The Nature of Ownership Harvard Law Review. 3: 313. DOI: 10.2307/1322295  0.01
1890 Ames JB. The Disseisin of Chattels. III. Inalienability of Choses in Action Harvard Law Review. 3: 337. DOI: 10.2307/1321166  0.01
1889 Ames JB. Assumpsit for Use and Occupation Harvard Law Review. 2: 377. DOI: 10.2307/1322080  0.01
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