| Year |
Citation |
Score |
| 2023 |
Cudia D, Ahoulou EO, Ames JB. Chemical shift assignments of retinal guanylyl cyclase activating protein 5 (GCAP5) with a mutation (R22A) that abolishes dimerization and enhances cyclase activation. Biomolecular Nmr Assignments. 17: 115-119. PMID 37129703 DOI: 10.1007/s12104-023-10129-3 |
0.318 |
|
| 2023 |
Bej A, Ames JB. Chemical shift assignments of calmodulin bound to a cytosolic domain of GluN2A (residues 1004-1024) from the NMDA receptor. Biomolecular Nmr Assignments. PMID 37029330 DOI: 10.1007/s12104-023-10125-7 |
0.349 |
|
| 2023 |
Bej A, Ames JB. Chemical shift assignments of calmodulin bound to the GluN1 C0 domain (residues 841-865) of the NMDA receptor. Biomolecular Nmr Assignments. PMID 36739573 DOI: 10.1007/s12104-023-10121-x |
0.322 |
|
| 2022 |
Bartels P, Salveson I, Coleman AM, Anderson DE, Jeng G, Estrada-Tobar ZM, Mimi Man KN, Yu Q, Kuzmenkina E, Nieves-Cintron M, Navedo MF, Horne MC, Hell JW, Ames JB. Half-calcified calmodulin promotes basal activity and inactivation of the L-type calcium channel Ca1.2. The Journal of Biological Chemistry. 102701. PMID 36395884 DOI: 10.1016/j.jbc.2022.102701 |
0.396 |
|
| 2022 |
Yadav DK, Anderson DE, Hell JW, Ames JB. Calmodulin promotes a Ca -dependent conformational change in the C-terminal regulatory domain of CaV1.2. Febs Letters. PMID 36310389 DOI: 10.1002/1873-3468.14529 |
0.393 |
|
| 2022 |
Ames JB. Structural basis of retinal membrane guanylate cyclase regulation by GCAP1 and RD3. Frontiers in Molecular Neuroscience. 15: 988142. PMID 36157073 DOI: 10.3389/fnmol.2022.988142 |
0.448 |
|
| 2022 |
Bej A, Ames JB. NMR Structures of Calmodulin Bound to Two Separate Regulatory Sites in the Retinal Cyclic Nucleotide-Gated Channel. Biochemistry. PMID 36070238 DOI: 10.1021/acs.biochem.2c00378 |
0.419 |
|
| 2022 |
Salveson I, Ames JB. Chemical shift assignments of the C-terminal domain of CaBP1 bound to the IQ-motif of voltage-gated Ca channel (Ca1.2). Biomolecular Nmr Assignments. PMID 36064846 DOI: 10.1007/s12104-022-10108-0 |
0.404 |
|
| 2022 |
Bej A, Ames JB. Chemical shift assignments of calmodulin bound to a C-terminal site (residues 1120-1147) in the β-subunit of a retinal cyclic nucleotide-gated channel (CNGB1). Biomolecular Nmr Assignments. PMID 35986879 DOI: 10.1007/s12104-022-10101-7 |
0.374 |
|
| 2022 |
Bej A, Ames JB. Chemical shift assignments of calmodulin under standard conditions at neutral pH. Biomolecular Nmr Assignments. PMID 35460468 DOI: 10.1007/s12104-022-10082-7 |
0.325 |
|
| 2022 |
Bej A, Ames JB. Chemical shift assignments of calmodulin bound to the β-subunit of a retinal cyclic nucleotide-gated channel (CNGB1). Biomolecular Nmr Assignments. PMID 35107779 DOI: 10.1007/s12104-022-10072-9 |
0.375 |
|
| 2021 |
Ames JB. L-Type Ca Channel Regulation by Calmodulin and CaBP1. Biomolecules. 11. PMID 34944455 DOI: 10.3390/biom11121811 |
0.411 |
|
| 2021 |
Cudia D, Roseman GP, Assafa TE, Shahu MK, Scholten A, Menke-Sell SK, Yamada H, Koch KW, Milhauser G, Ames JB. NMR and EPR-DEER Structure of a Dimeric Guanylate Cyclase Activator Protein-5 from Zebrafish Photoreceptors. Biochemistry. 60: 3058-3070. PMID 34609135 DOI: 10.1021/acs.biochem.1c00612 |
0.405 |
|
| 2021 |
Ames JB. Structural Insights into Retinal Guanylate Cyclase Activator Proteins (GCAPs). International Journal of Molecular Sciences. 22. PMID 34445435 DOI: 10.3390/ijms22168731 |
0.424 |
|
| 2021 |
Yu Q, Anderson DE, Kaur R, Fisher AJ, Ames JB. The Crystal Structure of Calmodulin Bound to the Cardiac Ryanodine Receptor (RyR2) at Residues Phe4246-Val4270 Reveals a Fifth Calcium Binding Site. Biochemistry. PMID 33754699 DOI: 10.1021/acs.biochem.1c00152 |
0.458 |
|
| 2021 |
Kirpich JS, Chang CW, Franse J, Yu Q, Escobar FV, Jenkins AJ, Martin SS, Narikawa R, Ames JB, Lagarias JC, Larsen DS. Comparison of the Forward and Reverse Photocycle Dynamics of Two Highly Similar Canonical Red/Green Cyanobacteriochromes Reveals Unexpected Differences. Biochemistry. PMID 33439010 DOI: 10.1021/acs.biochem.0c00796 |
0.458 |
|
| 2020 |
Turner M, Anderson DE, Bartels P, Nieves-Cintron M, Coleman AM, Henderson PB, Man KNM, Tseng PY, Yarov-Yarovoy V, Bers DM, Navedo MF, Horne MC, Ames JB, Hell JW. α-Actinin-1 promotes activity of the L-type Ca channel Ca 1.2. The Embo Journal. e102622. PMID 31985069 DOI: 10.15252/Embj.2019102622 |
0.456 |
|
| 2019 |
Salveson I, Anderson DE, Hell JW, Ames JB. Chemical shift assignments of a calmodulin intermediate with two Ca bound in complex with the IQ-motif of voltage-gated Ca channels (Ca1.2). Biomolecular Nmr Assignments. PMID 30788773 DOI: 10.1007/S12104-019-09883-0 |
0.481 |
|
| 2019 |
Cudia D, Ames JB. Chemical shift assignments of retinal guanylyl cyclase activating protein 5 (GCAP5). Biomolecular Nmr Assignments. PMID 30706384 DOI: 10.1007/S12104-019-09877-Y |
0.446 |
|
| 2018 |
Peshenko IV, Yu Q, Lim S, Cudia D, Dizhoor AM, Ames JB. Retinal degeneration 3 (RD3) protein, a retinal guanylyl cyclase regulator, forms a monomeric and elongated four helix bundle. The Journal of Biological Chemistry. PMID 30559291 DOI: 10.1074/jbc.RA118.006106 |
0.331 |
|
| 2018 |
Ames JB. Dimerization of Neuronal Calcium Sensor Proteins. Frontiers in Molecular Neuroscience. 11: 397. PMID 30450035 DOI: 10.3389/Fnmol.2018.00397 |
0.57 |
|
| 2018 |
Lim S, Yu Q, Gottlieb SM, Chang CW, Rockwell NC, Martin SS, Madsen D, Lagarias JC, Larsen DS, Ames JB. Correlating structural and photochemical heterogeneity in cyanobacteriochrome NpR6012g4. Proceedings of the National Academy of Sciences of the United States of America. 115: 4387-4392. PMID 29632180 DOI: 10.1073/Pnas.1720682115 |
0.499 |
|
| 2018 |
Lim S, Roseman G, Peshenko I, Manchala G, Cudia D, Dizhoor AM, Millhauser G, Ames JB. Retinal guanylyl cyclase activating protein 1 forms a functional dimer. Plos One. 13: e0193947. PMID 29513743 DOI: 10.1371/Journal.Pone.0193947 |
0.415 |
|
| 2018 |
Chowdhury D, Turner M, Patriarchi T, Hergarden AC, Anderson D, Zhang Y, Sun J, Chen CY, Ames JB, Hell JW. Ca/calmodulin binding to PSD-95 mediates homeostatic synaptic scaling down. The Embo Journal. 37: 122-138. PMID 29118000 DOI: 10.15252/Embj.201695829 |
0.34 |
|
| 2017 |
Lim S, Scholten A, Manchala G, Cudia D, Zlomke-Sell SK, Koch KW, Ames JB. Structural Characterization of Ferrous Ion Binding to Retinal Guanylate Cyclase Activator Protein 5 from Zebrafish Photoreceptors. Biochemistry. 56: 6652-6661. PMID 29172459 DOI: 10.1021/Acs.Biochem.7B01029 |
0.364 |
|
| 2016 |
Li C, Lim S, Braunewell KH, Ames JB. Structure and Calcium Binding Properties of a Neuronal Calcium-Myristoyl Switch Protein, Visinin-Like Protein 3. Plos One. 11: e0165921. PMID 27820860 DOI: 10.1371/Journal.Pone.0165921 |
0.586 |
|
| 2016 |
Turner M, Anderson DE, Rajan S, Hell JW, Ames JB. Chemical shift assignments of the C-terminal EF-hand domain of α-actinin-1. Biomolecular Nmr Assignments. 10: 219-22. PMID 26861220 DOI: 10.1007/S12104-016-9670-2 |
0.403 |
|
| 2016 |
Lim S, Peshenko IV, Olshevskaya EV, Dizhoor AM, Ames JB. Structure of Guanylyl Cyclase Activator Protein 1 (GCAP1) Mutant V77E in a Ca2+-free/Mg2+-bound Activator State. The Journal of Biological Chemistry. 291: 4429-41. PMID 26703466 DOI: 10.1074/jbc.M115.696161 |
0.447 |
|
| 2016 |
Lim S, Yu Q, Rockwell NC, Martin SS, Lagarias JC, Ames JB. 1H, 13C, and 15N chemical shift assignments of cyanobacteriochrome NpR6012g4 in the green-absorbing photoproduct state. Biomolecular Nmr Assignments. 10: 157-61. PMID 26537963 DOI: 10.1007/S12104-015-9657-4 |
0.527 |
|
| 2016 |
Turner M, Ames J. actinin-1 EF hand 3,4 Bound to Cav1.2 IQ Motif Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr25902 |
0.334 |
|
| 2015 |
Maric D, Olson CL, Xu X, Ames JB, Engman DM. Calcium-dependent membrane association of a flagellar calcium sensor does not require calcium binding. Molecular and Biochemical Parasitology. 201: 72-75. PMID 26099941 DOI: 10.1016/J.Molbiopara.2015.06.003 |
0.57 |
|
| 2015 |
Rockwell NC, Martin SS, Lim S, Lagarias JC, Ames JB. Characterization of Red/Green Cyanobacteriochrome NpR6012g4 by Solution Nuclear Magnetic Resonance Spectroscopy: A Hydrophobic Pocket for the C15-E,anti Chromophore in the Photoproduct. Biochemistry. 54: 3772-83. PMID 25989712 DOI: 10.1021/Acs.Biochem.5B00438 |
0.576 |
|
| 2015 |
Rockwell NC, Martin SS, Lim S, Lagarias JC, Ames JB. Characterization of Red/Green Cyanobacteriochrome NpR6012g4 by Solution Nuclear Magnetic Resonance Spectroscopy: A Protonated Bilin Ring System in Both Photostates. Biochemistry. 54: 2581-600. PMID 25843271 DOI: 10.1021/Bi501548T |
0.576 |
|
| 2015 |
Nepomuceno GM, Chan KM, Huynh V, Martin KS, Moore JT, O'Brien TE, Pollo LA, Sarabia FJ, Tadeus C, Yao Z, Anderson DE, Ames JB, Shaw JT. Synthesis and Evaluation of Quinazolines as Inhibitors of the Bacterial Cell Division Protein FtsZ. Acs Medicinal Chemistry Letters. 6: 308-12. PMID 25815151 DOI: 10.1021/Ml500497S |
0.306 |
|
| 2014 |
Park S, Li C, Haeseleer F, Palczewski K, Ames JB. Structural insights into activation of the retinal L-type Ca²⁺ channel (Cav1.4) by Ca²⁺-binding protein 4 (CaBP4). The Journal of Biological Chemistry. 289: 31262-73. PMID 25258313 DOI: 10.1074/Jbc.M114.604439 |
0.459 |
|
| 2014 |
Lim S, Rockwell NC, Martin SS, Dallas JL, Lagarias JC, Ames JB. Photoconversion changes bilin chromophore conjugation and protein secondary structure in the violet/orange cyanobacteriochrome NpF2164g3' [corrected]. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 13: 951-62. PMID 24745038 DOI: 10.1039/C3Pp50442E |
0.591 |
|
| 2014 |
Zhang Y, Matt L, Patriarchi T, Malik ZA, Chowdhury D, Park DK, Renieri A, Ames JB, Hell JW. Capping of the N-terminus of PSD-95 by calmodulin triggers its postsynaptic release. The Embo Journal. 33: 1341-53. PMID 24705785 DOI: 10.1002/Embj.201488126 |
0.347 |
|
| 2014 |
Lim S, Dizhoor AM, Ames JB. Structural diversity of neuronal calcium sensor proteins and insights for activation of retinal guanylyl cyclase by GCAP1. Frontiers in Molecular Neuroscience. 7: 19. PMID 24672427 DOI: 10.3389/fnmol.2014.00019 |
0.474 |
|
| 2014 |
Peshenko IV, Olshevskaya EV, Lim S, Ames JB, Dizhoor AM. Identification of target binding site in photoreceptor guanylyl cyclase-activating protein 1 (GCAP1). The Journal of Biological Chemistry. 289: 10140-54. PMID 24567338 DOI: 10.1074/jbc.M113.540716 |
0.315 |
|
| 2014 |
Park S, Li C, Ames JB. ¹H, ¹⁵N, and ¹³C chemical shift assignments of murine calcium-binding protein 4. Biomolecular Nmr Assignments. 8: 361-4. PMID 23925854 DOI: 10.1007/s12104-013-9517-z |
0.482 |
|
| 2014 |
Lim S, Rockwell NC, Martin SS, Lagarias JC, Ames JB. ¹H, ¹⁵N, and ¹³C chemical shift assignments of cyanobacteriochrome NpF2164g3 in the photoproduct state. Biomolecular Nmr Assignments. 8: 259-62. PMID 23749453 DOI: 10.1007/S12104-013-9496-0 |
0.516 |
|
| 2014 |
Zhang Y, Ames J. Backbone 1H, 13C, 15N resonance assignments of calcium-bound calmodulin in complex with PSD95 N-terminal peptide Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Mes/Pdb |
0.376 |
|
| 2013 |
Lim S, Peshenko IV, Dizhoor AM, Ames JB. Structural insights for activation of retinal guanylate cyclase by GCAP1. Plos One. 8: e81822. PMID 24236217 DOI: 10.1371/journal.pone.0081822 |
0.457 |
|
| 2013 |
Myers WK, Xu X, Li C, Lagerstedt JO, Budamagunta MS, Voss JC, Britt RD, Ames JB. Double electron-electron resonance probes Ca²⁺-induced conformational changes and dimerization of recoverin. Biochemistry. 52: 5800-8. PMID 23906368 DOI: 10.1021/Bi400538W |
0.445 |
|
| 2013 |
Li C, Enomoto M, Rossi AM, Seo MD, Rahman T, Stathopulos PB, Taylor CW, Ikura M, Ames JB. CaBP1, a neuronal Ca2+ sensor protein, inhibits inositol trisphosphate receptors by clamping intersubunit interactions. Proceedings of the National Academy of Sciences of the United States of America. 110: 8507-12. PMID 23650371 DOI: 10.1073/pnas.1220847110 |
0.443 |
|
| 2013 |
Lim S, Peshenko IV, Dizhoor AM, Ames JB. Backbone (1)H, (13)C, and (15)N resonance assignments of guanylyl cyclase activating protein-1, GCAP1. Biomolecular Nmr Assignments. 7: 39-42. PMID 22392341 DOI: 10.1007/s12104-012-9373-2 |
0.417 |
|
| 2013 |
Xu X, Olson CL, Engman DM, Ames JB. (1)H, (15)N, and (13)C chemical shift assignments of the calflagin Tb24 flagellar calcium binding protein of Trypanosoma brucei. Biomolecular Nmr Assignments. 7: 9-12. PMID 22382573 DOI: 10.1007/S12104-012-9366-1 |
0.353 |
|
| 2013 |
Lim S, Rockwell NC, Martin SS, Lagarias JC, Ames JB. 1H, 15N, and 13C chemical shift assignments of cyanobacteriochrome NpF2164g3 in the photoproduct state Biomolecular Nmr Assignments. 1-4. DOI: 10.1007/s12104-013-9496-0 |
0.478 |
|
| 2012 |
Xu X, Olson CL, Engman DM, Ames JB. NMR structure of the calflagin Tb24 flagellar calcium binding protein of Trypanosoma brucei. Protein Science : a Publication of the Protein Society. 21: 1942-7. PMID 23011904 DOI: 10.1002/Pro.2167 |
0.468 |
|
| 2012 |
Sugiarto G, Lau K, Qu J, Li Y, Lim S, Mu S, Ames JB, Fisher AJ, Chen X. A sialyltransferase mutant with decreased donor hydrolysis and reduced sialidase activities for directly sialylating LewisX. Acs Chemical Biology. 7: 1232-40. PMID 22583967 DOI: 10.1021/Cb300125K |
0.304 |
|
| 2012 |
Peshenko IV, Olshevskaya EV, Lim S, Ames JB, Dizhoor AM. Calcium-myristoyl Tug is a new mechanism for intramolecular tuning of calcium sensitivity and target enzyme interaction for guanylyl cyclase-activating protein 1: dynamic connection between N-fatty acyl group and EF-hand controls calcium sensitivity. The Journal of Biological Chemistry. 287: 13972-84. PMID 22383530 DOI: 10.1074/Jbc.M112.341883 |
0.573 |
|
| 2012 |
Ames JB, Lim S, Ikura M. Molecular structure and target recognition of neuronal calcium sensor proteins. Frontiers in Molecular Neuroscience. 5: 10. PMID 22363261 DOI: 10.3389/Fnmol.2012.00010 |
0.455 |
|
| 2012 |
Zhang Y, Li Z, Sacks DB, Ames JB. Structural basis for Ca2+-induced activation and dimerization of estrogen receptor α by calmodulin. The Journal of Biological Chemistry. 287: 9336-44. PMID 22275375 DOI: 10.1074/Jbc.M111.334797 |
0.344 |
|
| 2012 |
Ames JB, Lim S. Molecular structure and target recognition of neuronal calcium sensor proteins. Biochimica Et Biophysica Acta. 1820: 1205-13. PMID 22020049 DOI: 10.1016/J.Bbagen.2011.10.003 |
0.382 |
|
| 2011 |
Wang CK, Simon A, Jessen CM, Oliveira CL, Mack L, Braunewell KH, Ames JB, Pedersen JS, Hofmann A. Divalent cations and redox conditions regulate the molecular structure and function of visinin-like protein-1. Plos One. 6: e26793. PMID 22073194 DOI: 10.1371/Journal.Pone.0026793 |
0.492 |
|
| 2011 |
Zhang Y, Larsen CA, Stadler HS, Ames JB. Structural basis for sequence specific DNA binding and protein dimerization of HOXA13. Plos One. 6: e23069. PMID 21829694 DOI: 10.1371/Journal.Pone.0023069 |
0.363 |
|
| 2011 |
Park S, Li C, Ames JB. Nuclear magnetic resonance structure of calcium-binding protein 1 in a Ca(2+) -bound closed state: implications for target recognition. Protein Science : a Publication of the Protein Society. 20: 1356-66. PMID 21608059 DOI: 10.1002/Pro.662 |
0.566 |
|
| 2011 |
Xu X, Ishima R, Ames JB. Conformational dynamics of recoverin's Ca2+-myristoyl switch probed by 15N NMR relaxation dispersion and chemical shift analysis. Proteins. 79: 1910-22. PMID 21465563 DOI: 10.1002/Prot.23014 |
0.552 |
|
| 2011 |
Lim S, Strahl T, Thorner J, Ames JB. Structure of a Ca2+-myristoyl switch protein that controls activation of a phosphatidylinositol 4-kinase in fission yeast. The Journal of Biological Chemistry. 286: 12565-77. PMID 21288895 DOI: 10.1074/Jbc.M110.208868 |
0.561 |
|
| 2011 |
Li C, Pan W, Braunewell KH, Ames JB. Structural analysis of Mg2+ and Ca2+ binding, myristoylation, and dimerization of the neuronal calcium sensor and visinin-like protein 1 (VILIP-1). The Journal of Biological Chemistry. 286: 6354-66. PMID 21169352 DOI: 10.1074/Jbc.M110.173724 |
0.562 |
|
| 2011 |
Xu W, Xu X, Leal WS, Ames JB. Extrusion of the C-terminal helix in navel orangeworm moth pheromone-binding protein (AtraPBP1) controls pheromone binding. Biochemical and Biophysical Research Communications. 404: 335-8. PMID 21130734 DOI: 10.1016/J.Bbrc.2010.11.119 |
0.389 |
|
| 2010 |
Mao Y, Xu X, Xu W, Ishida Y, Leal WS, Ames JB, Clardy J. Crystal and solution structures of an odorant-binding protein from the southern house mosquito complexed with an oviposition pheromone. Proceedings of the National Academy of Sciences of the United States of America. 107: 19102-7. PMID 20956299 DOI: 10.1073/Pnas.1012274107 |
0.4 |
|
| 2010 |
Kohler AC, Gae DD, Richley MA, Stoll S, Gunn A, Lim S, Martin SS, Doukov TI, Britt RD, Ames JB, Lagarias JC, Fisher AJ. Structural basis for hydration dynamics in radical stabilization of bilin reductase mutants. Biochemistry. 49: 6206-18. PMID 20557110 DOI: 10.1021/Bi100728Q |
0.559 |
|
| 2010 |
Park S, Li C, Ames JB. 1H, 15N, and 13C chemical shift assignments of calcium-binding protein 1 with Ca2+ bound at EF1, EF3 and EF4. Biomolecular Nmr Assignments. 4: 159-61. PMID 20503119 DOI: 10.1007/s12104-010-9235-8 |
0.486 |
|
| 2010 |
Valentine KG, Peterson RW, Saad JS, Summers MF, Xu X, Ames JB, Wand AJ. Reverse micelle encapsulation of membrane-anchored proteins for solution NMR studies. Structure (London, England : 1993). 18: 9-16. PMID 20152148 DOI: 10.1016/J.Str.2009.11.010 |
0.413 |
|
| 2010 |
Xu X, Xu W, Rayo J, Ishida Y, Leal WS, Ames JB. NMR structure of navel orangeworm moth pheromone-binding protein (AtraPBP1): implications for pH-sensitive pheromone detection. Biochemistry. 49: 1469-76. PMID 20088570 DOI: 10.1021/Bi9020132 |
0.329 |
|
| 2010 |
Hamasaki-Katagiri N, Ames JB. Neuronal calcium sensor-1 (Ncs1p) is up-regulated by calcineurin to promote Ca2+ tolerance in fission yeast. The Journal of Biological Chemistry. 285: 4405-14. PMID 20018864 DOI: 10.1074/Jbc.M109.058594 |
0.5 |
|
| 2009 |
Lim S, Peshenko I, Dizhoor A, Ames JB. Effects of Ca2+, Mg2+, and myristoylation on guanylyl cyclase activating protein 1 structure and stability. Biochemistry. 48: 850-62. PMID 19143494 DOI: 10.1021/Bi801897P |
0.553 |
|
| 2009 |
Li C, Chan J, Haeseleer F, Mikoshiba K, Palczewski K, Ikura M, Ames JB. Structural insights into Ca2+-dependent regulation of inositol 1,4,5-trisphosphate receptors by CaBP1. The Journal of Biological Chemistry. 284: 2472-81. PMID 19008222 DOI: 10.1074/Jbc.M806513200 |
0.54 |
|
| 2009 |
Ames J. Backbone assignments for odorant binding protein 1 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr16175 |
0.369 |
|
| 2008 |
Li C, Ames JB. 1H, 15N, and 13C chemical shift assignments of calcium-bound calcium-binding protein 1 (CaBP1). Biomolecular Nmr Assignments. 2: 61-3. PMID 19636926 DOI: 10.1007/s12104-008-9085-9 |
0.475 |
|
| 2008 |
Xu X, Li Y, Rayo J, Ishida Y, Leal W, Ames JB. 1H, 15N, and 13C Chemical shift assignments of the navel orange worm pheromone-binding protein-1 (Atra-PBP1). Biomolecular Nmr Assignments. 2: 105-6. PMID 19636880 DOI: 10.1007/S12104-008-9096-6 |
0.318 |
|
| 2008 |
Wingard JN, Ladner J, Vanarotti M, Fisher AJ, Robinson H, Buchanan KT, Engman DM, Ames JB. Structural insights into membrane targeting by the flagellar calcium-binding protein (FCaBP), a myristoylated and palmitoylated calcium sensor in Trypanosoma cruzi. The Journal of Biological Chemistry. 283: 23388-96. PMID 18559337 DOI: 10.1074/Jbc.M803178200 |
0.809 |
|
| 2008 |
Lusin JD, Vanarotti M, Li C, Valiveti A, Ames JB. NMR structure of DREAM: Implications for Ca(2+)-dependent DNA binding and protein dimerization. Biochemistry. 47: 2252-64. PMID 18201103 DOI: 10.1021/Bi7017267 |
0.529 |
|
| 2008 |
Ames J. NMR resonance assignments for Ca2+-bound DREAM Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr15561 |
0.452 |
|
| 2007 |
Li C, Ames JB. 1H, 15N, and 13C chemical shift assignments of calcium-binding protein 1 (CaBP1). Biomolecular Nmr Assignments. 1: 77-9. PMID 19636832 DOI: 10.1007/s12104-007-9019-y |
0.47 |
|
| 2007 |
Strahl T, Huttner IG, Lusin JD, Osawa M, King D, Thorner J, Ames JB. Structural insights into activation of phosphatidylinositol 4-kinase (Pik1) by yeast frequenin (Frq1). The Journal of Biological Chemistry. 282: 30949-59. PMID 17720810 DOI: 10.1074/Jbc.M705499200 |
0.471 |
|
| 2007 |
Stathopulos PB, Ames JB, Ikura M. Structural aspects of calcium-binding proteins and their interactions with targets New Comprehensive Biochemistry. 41: 95-123. DOI: 10.1016/S0167-7306(06)41004-8 |
0.55 |
|
| 2006 |
Ames JB, Levay K, Wingard JN, Lusin JD, Slepak VZ. Structural basis for calcium-induced inhibition of rhodopsin kinase by recoverin. The Journal of Biological Chemistry. 281: 37237-45. PMID 17020884 DOI: 10.1074/Jbc.M606913200 |
0.809 |
|
| 2006 |
Stathopulos PB, Li GY, Plevin MJ, Ames JB, Ikura M. Stored Ca2+ depletion-induced oligomerization of stromal interaction molecule 1 (STIM1) via the EF-SAM region: An initiation mechanism for capacitive Ca2+ entry. The Journal of Biological Chemistry. 281: 35855-62. PMID 17020874 DOI: 10.1074/Jbc.M608247200 |
0.504 |
|
| 2006 |
Lin Y, Lusin JD, Ye D, Dunaway-Mariano D, Ames JB. Examination of the structure, stability, and catalytic potential in the engineered phosphoryl carrier domain of pyruvate phosphate dikinase. Biochemistry. 45: 1702-11. PMID 16460017 DOI: 10.1021/Bi051816L |
0.342 |
|
| 2006 |
Ikura M, Ames JB. Genetic polymorphism and protein conformational plasticity in the calmodulin superfamily: two ways to promote multifunctionality. Proceedings of the National Academy of Sciences of the United States of America. 103: 1159-64. PMID 16432210 DOI: 10.1073/Pnas.0508640103 |
0.538 |
|
| 2005 |
Buchanan KT, Ames JB, Asfaw SH, Wingard JN, Olson CL, Campana PT, Araújo AP, Engman DM. A flagellum-specific calcium sensor. The Journal of Biological Chemistry. 280: 40104-11. PMID 16148003 DOI: 10.1074/Jbc.M505777200 |
0.775 |
|
| 2005 |
Wingard JN, Chan J, Bosanac I, Haeseleer F, Palczewski K, Ikura M, Ames JB. Structural analysis of Mg2+ and Ca2+ binding to CaBP1, a neuron-specific regulator of calcium channels. The Journal of Biological Chemistry. 280: 37461-70. PMID 16147998 DOI: 10.1074/Jbc.M508541200 |
0.795 |
|
| 2005 |
Ames JB, Vyas V, Lusin JD, Mariuzza R. NMR structure of the natural killer cell receptor 2B4 (CD244): implications for ligand recognition. Biochemistry. 44: 6416-23. PMID 15850375 DOI: 10.1021/Bi050139S |
0.31 |
|
| 2005 |
Osawa M, Dace A, Tong KI, Valiveti A, Ikura M, Ames JB. Mg2+ and Ca2+ differentially regulate DNA binding and dimerization of DREAM. The Journal of Biological Chemistry. 280: 18008-14. PMID 15746104 DOI: 10.1074/Jbc.M500338200 |
0.514 |
|
| 2004 |
Zhu J, Stabler SM, Ames JB, Baskakov I, Monteiro MJ. Calcium binding sequences in calmyrin regulates interaction with presenilin-2. Experimental Cell Research. 300: 440-54. PMID 15475008 DOI: 10.1016/J.Yexcr.2004.07.020 |
0.531 |
|
| 2004 |
Hamasaki-Katagiri N, Molchanova T, Takeda K, Ames JB. Fission yeast homolog of neuronal calcium sensor-1 (Ncs1p) regulates sporulation and confers calcium tolerance. The Journal of Biological Chemistry. 279: 12744-54. PMID 14722091 DOI: 10.1074/Jbc.M311895200 |
0.554 |
|
| 2004 |
Monteiro MJ, Zhu J, Stabler SM, Ames JB. P3-200 Calcium-binding regulates calmyrin interaction with presenilin-2 Neurobiology of Aging. 25: S412. DOI: 10.1016/S0197-4580(04)81351-4 |
0.39 |
|
| 2003 |
Valentine KG, Mesleh MF, Opella SJ, Ikura M, Ames JB. Structure, topology, and dynamics of myristoylated recoverin bound to phospholipid bilayers. Biochemistry. 42: 6333-40. PMID 12767213 DOI: 10.1021/Bi0206816 |
0.506 |
|
| 2003 |
Huttner IG, Strahl T, Osawa M, King DS, Ames JB, Thorner J. Molecular interactions of yeast frequenin (Frq1) with the phosphatidylinositol 4-kinase isoform, Pik1. The Journal of Biological Chemistry. 278: 4862-74. PMID 12477731 DOI: 10.1074/Jbc.M207920200 |
0.468 |
|
| 2002 |
Ames JB, Ikura M. Structure and membrane-targeting mechanism of retinal Ca2+-binding proteins, recoverin and GCAP-2. Advances in Experimental Medicine and Biology. 514: 333-48. PMID 12596931 DOI: 10.1007/978-1-4615-0121-3_20 |
0.576 |
|
| 2002 |
Ikura M, Osawa M, Ames JB. The role of calcium-binding proteins in the control of transcription: structure to function. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 24: 625-36. PMID 12111723 DOI: 10.1002/Bies.10105 |
0.502 |
|
| 2002 |
Ames JB, Hamasaki N, Molchanova T. Structure and calcium-binding studies of a recoverin mutant (E85Q) in an allosteric intermediate state. Biochemistry. 41: 5776-87. PMID 11980481 DOI: 10.1021/Bi012153K |
0.606 |
|
| 2002 |
Yap KL, Ames JB, Swindells MB, Ikura M. Vector geometry mapping. A method to characterize the conformation of helix-loop-helix calcium-binding proteins. Methods in Molecular Biology (Clifton, N.J.). 173: 317-24. PMID 11859772 DOI: 10.1385/1-59259-184-1:317 |
0.322 |
|
| 2002 |
Ames J, Hamasaki N, Molchanova T. 1H, 13C, and 15N Chemical Shift Assignments for E85Q recoverin Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr5332 |
0.305 |
|
| 2001 |
Osawa M, Tong KI, Lilliehook C, Wasco W, Buxbaum JD, Cheng HY, Penninger JM, Ikura M, Ames JB. Calcium-regulated DNA binding and oligomerization of the neuronal calcium-sensing protein, calsenilin/DREAM/KChIP3. The Journal of Biological Chemistry. 276: 41005-13. PMID 11535596 DOI: 10.1074/Jbc.M105842200 |
0.567 |
|
| 2001 |
Tanaka T, Ames J, Kainosho M, Stryer L, Ikura M. Refinement of the Solution Structure of Calcium-Free, Myristoylated Recoverin Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr4030 |
0.708 |
|
| 2000 |
Ames JB, Hendricks KB, Strahl T, Huttner IG, Hamasaki N, Thorner J. Structure and calcium-binding properties of Frq1, a novel calcium sensor in the yeast Saccharomyces cerevisiae. Biochemistry. 39: 12149-61. PMID 11015193 DOI: 10.1021/Bi0012890 |
0.595 |
|
| 2000 |
Ames JB, Ikura M, Stryer L. Molecular structure of membrane-targeting calcium sensors in vision: recoverin and guanylate cyclase-activating protein 2. Methods in Enzymology. 316: 121-32. PMID 10800672 DOI: 10.1016/S0076-6879(00)16720-5 |
0.785 |
|
| 2000 |
Palczewski K, Polans AS, Baehr W, Ames JB. Ca2+-binding proteins in the retina: Structure, function, and the etiology of human visual diseases Bioessays. 22: 337-350. PMID 10723031 DOI: 10.1002/(Sici)1521-1878(200004)22:4<337::Aid-Bies4>3.0.Co;2-Z |
0.503 |
|
| 1999 |
Yap KL, Ames JB, Swindells MB, Ikura M. Diversity of conformational states and changes within the EF-hand protein superfamily. Proteins. 37: 499-507. PMID 10591109 DOI: 10.1002/(Sici)1097-0134(19991115)37:3<499::Aid-Prot17>3.0.Co;2-Y |
0.529 |
|
| 1999 |
Ames JB, Dizhoor AM, Ikura M, Palczewski K, Stryer L. Three-dimensional structure of guanylyl cyclase activating protein-2, a calcium-sensitive modulator of photoreceptor guanylyl cyclases. The Journal of Biological Chemistry. 274: 19329-37. PMID 10383444 DOI: 10.1074/Jbc.274.27.19329 |
0.796 |
|
| 1999 |
Baldwin AN, Ames JB. Core mutations that promote the calcium-induced allosteric transition of bovine recoverin. Biochemistry. 37: 17408-19. PMID 9860856 DOI: 10.1021/Bi980928S |
0.542 |
|
| 1998 |
Tanaka T, Ames JB, Kainosho M, Stryer L, Ikura M. Differential isotype labeling strategy for determining the structure of myristoylated recoverin by NMR spectroscopy. Journal of Biomolecular Nmr. 11: 135-52. PMID 9679292 DOI: 10.1023/A:1008212316986 |
0.726 |
|
| 1998 |
Alattia JR, Ames JB, Porumb T, Tong KI, Heng YM, Ottensmeyer P, Kay CM, Ikura M. Lateral self-assembly of E-cadherin directed by cooperative calcium binding. Febs Letters. 417: 405-8. PMID 9409761 DOI: 10.1016/S0014-5793(97)01333-1 |
0.524 |
|
| 1997 |
Ames JB, Ishima R, Tanaka T, Gordon JI, Stryer L, Ikura M. Molecular mechanics of calcium-myristoyl switches. Nature. 389: 198-202. PMID 9296500 DOI: 10.1038/38310 |
0.788 |
|
| 1996 |
Ames JB, Tanaka T, Stryer L, Ikura M. Portrait of a myristoyl switch protein. Current Opinion in Structural Biology. 6: 432-8. PMID 8794166 DOI: 10.1016/S0959-440X(96)80106-0 |
0.753 |
|
| 1995 |
Ames JB, Tanaka T, Ikura M, Stryer L. Nuclear magnetic resonance evidence for Ca(2+)-induced extrusion of the myristoyl group of recoverin. The Journal of Biological Chemistry. 270: 30909-13. PMID 8537345 DOI: 10.1074/Jbc.270.52.30909 |
0.775 |
|
| 1995 |
Ames JB, Porumb T, Tanaka T, Ikura M, Stryer L. Amino-terminal myristoylation induces cooperative calcium binding to recoverin. The Journal of Biological Chemistry. 270: 4526-33. PMID 7876221 DOI: 10.1074/Jbc.270.9.4526 |
0.784 |
|
| 1995 |
Tanaka T, Ames JB, Harvey TS, Stryer L, Ikura M. Sequestration of the membrane-targeting myristoyl group of recoverin in the calcium-free state. Nature. 376: 444-7. PMID 7630423 DOI: 10.1038/376444A0 |
0.798 |
|
| 1994 |
Ames JB, Tanaka T, Stryer L, Ikura M. Secondary structure of myristoylated recoverin determined by three-dimensional heteronuclear NMR: implications for the calcium-myristoyl switch. Biochemistry. 33: 10743-53. PMID 8075075 DOI: 10.1021/Bi00201A023 |
0.794 |
|
| 1992 |
Ames JB, Ros M, Raap J, Lugtenburg J, Mathies RA. Time-resolved ultraviolet resonance Raman studies of protein structure: application to bacteriorhodopsin. Biochemistry. 31: 5328-34. PMID 1606157 DOI: 10.1021/Bi00138A012 |
0.611 |
|
| 1992 |
Ames JB, Raap J, Lugtenburg J, Mathies RA. Resonance Raman study of halorhodopsin photocycle kinetics, chromophore structure, and chloride-pumping mechanism. Biochemistry. 31: 12546-54. PMID 1472492 DOI: 10.1021/Bi00165A002 |
0.606 |
|
| 1991 |
Mathies RA, Lin SW, Ames JB, Pollard WT. From femtoseconds to biology: mechanism of bacteriorhodopsin's light-driven proton pump. Annual Review of Biophysics and Biophysical Chemistry. 20: 491-518. PMID 1867724 DOI: 10.1146/annurev.bb.20.060191.002423 |
0.52 |
|
| 1990 |
Ames JB, Mathies RA. The role of back-reactions and proton uptake during the N----O transition in bacteriorhodopsin's photocycle: a kinetic resonance Raman study. Biochemistry. 29: 7181-90. PMID 2169875 DOI: 10.1021/Bi00483A005 |
0.577 |
|
| 1990 |
Ames JB, Bolton SR, Netto MM, Mathies RA. Ultraviolet resonance Raman spectroscopy of bacteriorhodopsin: evidence against tyrosinate in the photocycle Journal of the American Chemical Society. 112: 9007-9009. DOI: 10.1021/Ja00180A071 |
0.608 |
|
| 1989 |
Ames JB, Fodor SP, Gebhard R, Raap J, van den Berg EM, Lugtenburg J, Mathies RA. Bacteriorhodopsin's M412 intermediate contains a 13-cis, 14-s-trans, 15-anti-retinal Schiff base chromophore. Biochemistry. 28: 3681-7. PMID 2751988 DOI: 10.1021/Bi00435A009 |
0.597 |
|
| 1988 |
Fodor SP, Ames JB, Gebhard R, van den Berg EM, Stoeckenius W, Lugtenburg J, Mathies RA. Chromophore structure in bacteriorhodopsin's N intermediate: implications for the proton-pumping mechanism. Biochemistry. 27: 7097-101. PMID 2848578 DOI: 10.1021/Bi00418A064 |
0.609 |
|
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