Montgomery Slatkin, Ph.D. - Publications

Affiliations: 
Integrative Biology University of California, Berkeley, Berkeley, CA 
Area:
population genetics
Website:
http://fisher.berkeley.edu/cteg/slatkin.html

196 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Barlow A, Cahill JA, Hartmann S, Theunert C, Xenikoudakis G, Fortes GG, Paijmans JLA, Rabeder G, Frischauf C, Grandal-d'Anglade A, García-Vázquez A, Murtskhvaladze M, Saarma U, Anijalg P, Skrbinšek T, ... ... Slatkin M, et al. Partial genomic survival of cave bears in living brown bears. Nature Ecology & Evolution. PMID 30150744 DOI: 10.1038/S41559-018-0654-8  0.44
2017 Yang MA, Gao X, Theunert C, Tong H, Aximu-Petri A, Nickel B, Slatkin M, Meyer M, Pääbo S, Kelso J, Fu Q. 40,000-Year-Old Individual from Asia Provides Insight into Early Population Structure in Eurasia. Current Biology : Cb. PMID 29033327 DOI: 10.1016/J.Cub.2017.09.030  0.8
2017 Prüfer K, de Filippo C, Grote S, Mafessoni F, Korlević P, Hajdinjak M, Vernot B, Skov L, Hsieh P, Peyrégne S, Reher D, Hopfe C, Nagel S, Maricic T, Fu Q, ... ... Slatkin M, et al. A high-coverage Neandertal genome from Vindija Cave in Croatia. Science (New York, N.Y.). PMID 28982794 DOI: 10.1126/Science.Aao1887  0.44
2017 Theunert C, Racimo F, Slatkin M. Joint Estimation of Relatedness Coefficients and Allele Frequencies from Ancient Samples. Genetics. PMID 28396504 DOI: 10.1534/Genetics.117.200600  0.76
2017 Theunert C, Slatkin M. Distinguishing recent admixture from ancestral population structure. Genome Biology and Evolution. PMID 28186554 DOI: 10.1093/Gbe/Evx018  0.44
2016 Racimo F, Renaud G, Slatkin M. Correction: Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans. Plos Genetics. 12: e1006444. PMID 27824857 DOI: 10.1371/Journal.Pgen.1006444  0.76
2016 Slatkin M, Racimo F. Ancient DNA and human history. Proceedings of the National Academy of Sciences of the United States of America. 113: 6380-7. PMID 27274045 DOI: 10.1073/Pnas.1524306113  0.76
2016 Racimo F, Renaud G, Slatkin M. Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans. Plos Genetics. 12: e1005972. PMID 27049965 DOI: 10.1371/Journal.Pgen.1005972  1
2016 Schraiber JG, Evans SN, Slatkin M. Bayesian Inference of Natural Selection from Allele Frequency Time Series. Genetics. PMID 27010022 DOI: 10.1534/Genetics.116.187278  0.48
2015 Librado P, Der Sarkissian C, Ermini L, Schubert M, Jónsson H, Albrechtsen A, Fumagalli M, Yang MA, Gamba C, Seguin-Orlando A, Mortensen CD, Petersen B, Hoover CA, Lorente-Galdos B, Nedoluzhko A, ... ... Slatkin M, et al. Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments. Proceedings of the National Academy of Sciences of the United States of America. PMID 26598656 DOI: 10.1073/Pnas.1513696112  1
2015 Duforet-Frebourg N, Slatkin M. Isolation-By-Distance-and-Time in a stepping-stone model. Theoretical Population Biology. PMID 26592162 DOI: 10.1016/J.Tpb.2015.11.003  1
2015 Yang MA, Slatkin M. Using Ancient Samples in Projection Analysis. G3 (Bethesda, Md.). PMID 26546309 DOI: 10.1534/G3.115.023788  1
2015 Der Sarkissian C, Ermini L, Schubert M, Yang MA, Librado P, Fumagalli M, Jónsson H, Bar-Gal GK, Albrechtsen A, Vieira FG, Petersen B, Ginolhac A, Seguin-Orlando A, Magnussen K, Fages A, ... ... Slatkin M, et al. Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse. Current Biology : Cb. PMID 26412128 DOI: 10.1016/J.Cub.2015.08.032  1
2015 Peter BM, Slatkin M. The effective founder effect in a spatially expanding population. Evolution; International Journal of Organic Evolution. 69: 721-34. PMID 25656983 DOI: 10.1111/Evo.12609  1
2015 Macholdt E, Slatkin M, Pakendorf B, Stoneking M. New insights into the history of the C-14010 lactase persistence variant in Eastern and Southern Africa. American Journal of Physical Anthropology. 156: 661-4. PMID 25448164 DOI: 10.1002/Ajpa.22675  1
2015 Chen H, Hey J, Slatkin M. A hidden Markov model for investigating recent positive selection through haplotype structure. Theoretical Population Biology. 99: 18-30. PMID 25446961 DOI: 10.1016/J.Tpb.2014.11.001  1
2014 Fu Q, Li H, Moorjani P, Jay F, Slepchenko SM, Bondarev AA, Johnson PL, Aximu-Petri A, Prüfer K, de Filippo C, Meyer M, Zwyns N, Salazar-García DC, Kuzmin YV, Keates SG, ... ... Slatkin M, et al. Genome sequence of a 45,000-year-old modern human from western Siberia. Nature. 514: 445-9. PMID 25341783 DOI: 10.1038/Nature13810  1
2014 Yang MA, Harris K, Slatkin M. The projection of a test genome onto a reference population and applications to humans and archaic hominins. Genetics. 198: 1655-70. PMID 25324161 DOI: 10.1534/Genetics.112.145359  1
2014 Lazaridis I, Patterson N, Mittnik A, Renaud G, Mallick S, Kirsanow K, Sudmant PH, Schraiber JG, Castellano S, Lipson M, Berger B, Economou C, Bollongino R, Fu Q, Bos KI, ... ... Slatkin M, et al. Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature. 513: 409-13. PMID 25230663 DOI: 10.1038/Nature13673  0.6
2014 Racimo F, Kuhlwilm M, Slatkin M. A test for ancient selective sweeps and an application to candidate sites in modern humans. Molecular Biology and Evolution. 31: 3344-58. PMID 25172957 DOI: 10.1093/Molbev/Msu255  1
2014 Macholdt E, Lede V, Barbieri C, Mpoloka SW, Chen H, Slatkin M, Pakendorf B, Stoneking M. Tracing pastoralist migrations to southern Africa with lactase persistence alleles. Current Biology : Cb. 24: 875-9. PMID 24704073 DOI: 10.1016/J.Cub.2014.03.027  1
2014 Prüfer K, Racimo F, Patterson N, Jay F, Sankararaman S, Sawyer S, Heinze A, Renaud G, Sudmant PH, de Filippo C, Li H, Mallick S, Dannemann M, Fu Q, Kircher M, ... ... Slatkin M, et al. The complete genome sequence of a Neanderthal from the Altai Mountains. Nature. 505: 43-9. PMID 24352235 DOI: 10.1038/Nature12886  1
2013 Peter BM, Slatkin M. Detecting range expansions from genetic data. Evolution; International Journal of Organic Evolution. 67: 3274-89. PMID 24152007 DOI: 10.1111/Evo.12202  1
2013 Frantz LA, Schraiber JG, Madsen O, Megens HJ, Bosse M, Paudel Y, Semiadi G, Meijaard E, Li N, Crooijmans RP, Archibald AL, Slatkin M, Schook LB, Larson G, Groenen MA. Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus. Genome Biology. 14: R107. PMID 24070215 DOI: 10.1186/Gb-2013-14-9-R107  1
2013 Slatkin M. A method for estimating the effective number of loci affecting a quantitative character. Theoretical Population Biology. 89: 44-54. PMID 23973416 DOI: 10.1016/J.Tpb.2013.08.002  1
2013 Rohlfs RV, Murphy E, Song YS, Slatkin M. The influence of relatives on the efficiency and error rate of familial searching. Plos One. 8: e70495. PMID 23967076 DOI: 10.1371/Journal.Pone.0070495  1
2013 Chen H, Slatkin M. Inferring selection intensity and allele age from multilocus haplotype structure. G3 (Bethesda, Md.). 3: 1429-42. PMID 23797107 DOI: 10.1534/G3.113.006197  1
2013 Cahill JA, Green RE, Fulton TL, Stiller M, Jay F, Ovsyanikov N, Salamzade R, St John J, Stirling I, Slatkin M, Shapiro B. Genomic evidence for island population conversion resolves conflicting theories of polar bear evolution. Plos Genetics. 9: e1003345. PMID 23516372 DOI: 10.1371/Journal.Pgen.1003345  1
2013 Wall JD, Yang MA, Jay F, Kim SK, Durand EY, Stevison LS, Gignoux C, Woerner A, Hammer MF, Slatkin M. Higher levels of neanderthal ancestry in East Asians than in Europeans. Genetics. 194: 199-209. PMID 23410836 DOI: 10.1534/Genetics.112.148213  1
2013 Bronson PG, Mack SJ, Erlich HA, Slatkin M. A sequence-based approach demonstrates that balancing selection in classical human leukocyte antigen (HLA) loci is asymmetric. Human Molecular Genetics. 22: 252-61. PMID 23065702 DOI: 10.1093/Hmg/Dds424  1
2012 Schraiber JG, Shih S, Slatkin M. Genomic tests of variation in inbreeding among individuals and among chromosomes. Genetics. 192: 1477-82. PMID 23051641 DOI: 10.1534/Genetics.112.145367  1
2012 Wall JD, Slatkin M. Paleopopulation genetics. Annual Review of Genetics. 46: 635-49. PMID 22994357 DOI: 10.1146/annurev-genet-110711-155557  1
2012 Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de Filippo C, Sudmant PH, Alkan C, Fu Q, Do R, Rohland N, ... ... Slatkin M, et al. A high-coverage genome sequence from an archaic Denisovan individual. Science (New York, N.Y.). 338: 222-6. PMID 22936568 DOI: 10.1126/Science.1224344  1
2012 Malaspinas AS, Malaspinas O, Evans SN, Slatkin M. Estimating allele age and selection coefficient from time-serial data. Genetics. 192: 599-607. PMID 22851647 DOI: 10.1534/Genetics.112.140939  1
2012 Yang MA, Malaspinas AS, Durand EY, Slatkin M. Ancient structure in Africa unlikely to explain Neanderthal and non-African genetic similarity. Molecular Biology and Evolution. 29: 2987-95. PMID 22513287 DOI: 10.1093/Molbev/Mss117  1
2012 Slatkin M, Excoffier L. Serial founder effects during range expansion: a spatial analog of genetic drift. Genetics. 191: 171-81. PMID 22367031 DOI: 10.1534/Genetics.112.139022  1
2012 Slatkin M, Kirkpatrick M. Using known QTLs to detect directional epistatic interactions. Genetics Research. 94: 39-48. PMID 22353247 DOI: 10.1017/S0016672312000043  1
2012 Gong Z, Matzke NJ, Ermentrout B, Song D, Vendetti JE, Slatkin M, Oster G. Evolution of patterns on Conus shells. Proceedings of the National Academy of Sciences of the United States of America. 109: E234-41. PMID 22219366 DOI: 10.1073/Pnas.1119859109  1
2011 Durand EY, Patterson N, Reich D, Slatkin M. Testing for ancient admixture between closely related populations. Molecular Biology and Evolution. 28: 2239-52. PMID 21325092 DOI: 10.1093/Molbev/Msr048  1
2011 Malaspinas AS, Slatkin M, Song YS. Match probabilities in a finite, subdivided population. Theoretical Population Biology. 79: 55-63. PMID 21266180 DOI: 10.1016/J.Tpb.2011.01.003  1
2010 Reich D, Green RE, Kircher M, Krause J, Patterson N, Durand EY, Viola B, Briggs AW, Stenzel U, Johnson PL, Maricic T, Good JM, Marques-Bonet T, Alkan C, Fu Q, ... ... Slatkin M, et al. Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature. 468: 1053-60. PMID 21179161 DOI: 10.1038/Nature09710  1
2010 Song YS, Wang F, Slatkin M. General epistatic models of the risk of complex diseases. Genetics. 186: 1467-73. PMID 20855570 DOI: 10.1534/Genetics.110.119008  1
2010 Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH, Hansen NF, Durand EY, Malaspinas AS, Jensen JD, Marques-Bonet T, ... ... Slatkin M, et al. A draft sequence of the Neandertal genome. Science (New York, N.Y.). 328: 710-22. PMID 20448178 DOI: 10.1126/Science.1188021  1
2010 Reish O, Slatkin M, Chapman-Shimshoni D, Elizur A, Chioza B, Castleman V, Mitchison HM. Founder mutation(s) in the RSPH9 gene leading to primary ciliary dyskinesia in two inbred Bedouin families. Annals of Human Genetics. 74: 117-25. PMID 20070851 DOI: 10.1111/J.1469-1809.2009.00559.X  1
2009 Krane DE, Bahn V, Balding D, Barlow B, Cash H, Desportes BL, D'Eustachio P, Devlin K, Doom TE, Dror I, Ford S, Funk C, Gilder J, Hampikian G, Inman K, ... ... Slatkin M, et al. Time for DNA disclosure. Science (New York, N.Y.). 326: 1631-2. PMID 20019271 DOI: 10.1126/Science.326.5960.1631  1
2009 Manolio TA, Collins FS, Cox NJ, Goldstein DB, Hindorff LA, Hunter DJ, McCarthy MI, Ramos EM, Cardon LR, Chakravarti A, Cho JH, Guttmacher AE, Kong A, Kruglyak L, Mardis E, ... ... Slatkin M, et al. Finding the missing heritability of complex diseases. Nature. 461: 747-53. PMID 19812666 DOI: 10.1038/Nature08494  1
2009 Johnson PL, Slatkin M. Inference of microbial recombination rates from metagenomic data. Plos Genetics. 5: e1000674. PMID 19798447 DOI: 10.1371/Journal.Pgen.1000674  1
2009 Novembre J, Slatkin M. Likelihood-based inference in isolation-by-distance models using the spatial distribution of low-frequency alleles. Evolution; International Journal of Organic Evolution. 63: 2914-25. PMID 19624728 DOI: 10.1111/J.1558-5646.2009.00775.X  1
2009 Slatkin M. Epigenetic inheritance and the missing heritability problem. Genetics. 182: 845-50. PMID 19416939 DOI: 10.1534/Genetics.109.102798  1
2009 Ludwig A, Pruvost M, Reissmann M, Benecke N, Brockmann GA, Castaños P, Cieslak M, Lippold S, Llorente L, Malaspinas AS, Slatkin M, Hofreiter M. Coat color variation at the beginning of horse domestication. Science (New York, N.Y.). 324: 485. PMID 19390039 DOI: 10.1126/Science.1172750  1
2009 Song YS, Patil A, Murphy EE, Slatkin M. Average probability that a "cold hit" in a DNA database search results in an erroneous attribution. Journal of Forensic Sciences. 54: 22-7. PMID 19040670 DOI: 10.1111/J.1556-4029.2008.00917.X  1
2009 Zhai W, Nielsen R, Slatkin M. An investigation of the statistical power of neutrality tests based on comparative and population genetic data. Molecular Biology and Evolution. 26: 273-83. PMID 18922762 DOI: 10.1093/Molbev/Msn231  1
2008 Green RE, Malaspinas AS, Krause J, Briggs AW, Johnson PL, Uhler C, Meyer M, Good JM, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano HA, Ronan M, Rothberg JM, ... ... Slatkin M, et al. A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing. Cell. 134: 416-26. PMID 18692465 DOI: 10.1016/J.Cell.2008.06.021  1
2008 Slatkin M. Exchangeable models of complex inherited diseases. Genetics. 179: 2253-61. PMID 18689899 DOI: 10.1534/Genetics.107.077719  1
2008 Slatkin M, Pollack JL. Subdivision in an ancestral species creates asymmetry in gene trees. Molecular Biology and Evolution. 25: 2241-6. PMID 18689871 DOI: 10.1093/Molbev/Msn172  1
2008 Krause J, Unger T, Noçon A, Malaspinas AS, Kolokotronis SO, Stiller M, Soibelzon L, Spriggs H, Dear PH, Briggs AW, Bray SC, O'Brien SJ, Rabeder G, Matheus P, Cooper A, ... Slatkin M, et al. Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary. Bmc Evolutionary Biology. 8: 220. PMID 18662376 DOI: 10.1186/1471-2148-8-220  1
2008 Slatkin M. Genotype-specific recurrence risks as indicators of the genetic architecture of complex diseases. American Journal of Human Genetics. 83: 120-6. PMID 18597734 DOI: 10.1016/J.Ajhg.2008.06.011  1
2008 Slatkin M. Linkage disequilibrium--understanding the evolutionary past and mapping the medical future. Nature Reviews. Genetics. 9: 477-85. PMID 18427557 DOI: 10.1038/Nrg2361  1
2008 Slatkin M. A Bayesian method for jointly estimating allele age and selection intensity. Genetics Research. 90: 129-37. PMID 18289407 DOI: 10.1017/S0016672307008944  1
2008 Johnson PL, Slatkin M. Accounting for bias from sequencing error in population genetic estimates. Molecular Biology and Evolution. 25: 199-206. PMID 17981928 DOI: 10.1093/Molbev/Msm239  1
2007 Slatkin M. Inbreeding coefficients and coalescence times. Genetical Research. 89: 479-87. PMID 18976537 DOI: 10.1017/S0016672308009671  1
2007 Zhai W, Slatkin M, Nielsen R. Exploring variation in the d(N)/d(S) ratio among sites and lineages using mutational mappings: applications to the influenza virus. Journal of Molecular Evolution. 65: 340-8. PMID 17846819 DOI: 10.1007/S00239-007-9019-7  1
2007 Rohland N, Malaspinas AS, Pollack JL, Slatkin M, Matheus P, Hofreiter M. Proboscidean mitogenomics: chronology and mode of elephant evolution using mastodon as outgroup. Plos Biology. 5: e207. PMID 17676977 DOI: 10.1371/Journal.Pbio.0050207  1
2007 Chen H, Green RE, Pääbo S, Slatkin M. The joint allele-frequency spectrum in closely related species. Genetics. 177: 387-98. PMID 17603120 DOI: 10.1534/Genetics.107.070730  1
2007 Leblois R, Slatkin M. Estimating the number of founder lineages from haplotypes of closely linked SNPs. Molecular Ecology. 16: 2237-45. PMID 17561887 DOI: 10.1111/J.1365-294X.2007.03288.X  1
2007 Anderson EC, Slatkin M. Estimation of the number of individuals founding colonized populations. Evolution; International Journal of Organic Evolution. 61: 972-83. PMID 17439625 DOI: 10.1111/J.1558-5646.2007.00080.X  1
2007 Hofreiter M, Münzel S, Conard NJ, Pollack J, Slatkin M, Weiss G, Pääbo S. Sudden replacement of cave bear mitochondrial DNA in the late Pleistocene. Current Biology : Cb. 17: R122-3. PMID 17307042 DOI: 10.1016/J.Cub.2007.01.026  1
2007 Song YS, Slatkin M. A graphical approach to multi-locus match probability computation: revisiting the product rule. Theoretical Population Biology. 72: 96-110. PMID 17239909 DOI: 10.1016/J.Tpb.2006.11.005  1
2007 Evans SN, Shvets Y, Slatkin M. Non-equilibrium theory of the allele frequency spectrum. Theoretical Population Biology. 71: 109-19. PMID 16887160 DOI: 10.1016/J.Tpb.2006.06.005  1
2006 Johnson PL, Slatkin M. Inference of population genetic parameters in metagenomics: a clean look at messy data. Genome Research. 16: 1320-7. PMID 16954540 DOI: 10.1101/Gr.5431206  1
2006 Krause J, Dear PH, Pollack JL, Slatkin M, Spriggs H, Barnes I, Lister AM, Ebersberger I, Pääbo S, Hofreiter M. Multiplex amplification of the mammoth mitochondrial genome and the evolution of Elephantidae. Nature. 439: 724-7. PMID 16362058 DOI: 10.1038/Nature04432  1
2006 Slatkin M, Pollack JL. The concordance of gene trees and species trees at two linked loci. Genetics. 172: 1979-84. PMID 16361238 DOI: 10.1534/Genetics.105.049593  1
2005 Novembre J, Galvani AP, Slatkin M. The geographic spread of the CCR5 Delta32 HIV-resistance allele. Plos Biology. 3: e339. PMID 16216086 DOI: 10.1371/Journal.Pbio.0030339  1
2005 Wood ET, Stover DA, Slatkin M, Nachman MW, Hammer MF. The beta -globin recombinational hotspot reduces the effects of strong selection around HbC, a recently arisen mutation providing resistance to malaria. American Journal of Human Genetics. 77: 637-42. PMID 16175509 DOI: 10.1086/491748  1
2005 Saunders MA, Slatkin M, Garner C, Hammer MF, Nachman MW. The extent of linkage disequilibrium caused by selection on G6PD in humans. Genetics. 171: 1219-29. PMID 16020776 DOI: 10.1534/Genetics.105.048140  1
2005 Slatkin M. Seeing ghosts: the effect of unsampled populations on migration rates estimated for sampled populations. Molecular Ecology. 14: 67-73. PMID 15643951 DOI: 10.1111/J.1365-294X.2004.02393.X  1
2004 Slatkin M. A population-genetic test of founder effects and implications for Ashkenazi Jewish diseases. American Journal of Human Genetics. 75: 282-93. PMID 15208782 DOI: 10.1086/423146  1
2004 Galvani AP, Slatkin M. Intense selection in an age-structured population. Proceedings. Biological Sciences / the Royal Society. 271: 171-6. PMID 15058394 DOI: 10.1098/Rspb.2003.2573  1
2004 Anderson EC, Slatkin M. Population-genetic basis of haplotype blocks in the 5q31 region. American Journal of Human Genetics. 74: 40-9. PMID 14681827 DOI: 10.1086/381040  1
2003 Galvani AP, Slatkin M. Evaluating plague and smallpox as historical selective pressures for the CCR5-Delta 32 HIV-resistance allele. Proceedings of the National Academy of Sciences of the United States of America. 100: 15276-9. PMID 14645720 DOI: 10.1073/Pnas.2435085100  1
2003 Anderson EC, Slatkin M. Orr's quantitative trait loci sign test under conditions of trait ascertainment. Genetics. 165: 445-6. PMID 14575044  1
2003 O'Hely M, Slatkin M. The loss of statistical power to distinguish populations when certain samples are ambiguous. Theoretical Population Biology. 64: 177-92. PMID 12948679 DOI: 10.1016/S0040-5809(03)00084-4  1
2003 Wall DP, Herbeck JT. Evolutionary patterns of codon usage in the chloroplast gene rbcL. Journal of Molecular Evolution. 56: 673-88; discussion 6. PMID 12911031 DOI: 10.1007/S00239-002-2440-Z  1
2003 Garner C, Slatkin M. On selecting markers for association studies: patterns of linkage disequilibrium between two and three diallelic loci. Genetic Epidemiology. 24: 57-67. PMID 12508256 DOI: 10.1002/Gepi.10217  1
2002 Schliekelman P, Slatkin M. Multiplex relative risk and estimation of the number of loci underlying an inherited disease. American Journal of Human Genetics. 71: 1369-85. PMID 12454800 DOI: 10.1086/344779  1
2002 Slatkin M. A vectorized method of importance sampling with applications to models of mutation and migration. Theoretical Population Biology. 62: 339-48. PMID 12427457 DOI: 10.1016/S0040-5809(02)00007-2  1
2002 Muirhead CA, Glass NL, Slatkin M. Multilocus self-recognition systems in fungi as a cause of trans-species polymorphism. Genetics. 161: 633-41. PMID 12072460  1
2002 Garner C, Slatkin M. Likelihood-based disequilibrium mapping for two-marker haplotype data. Theoretical Population Biology. 61: 153-61. PMID 11969387 DOI: 10.1006/Tpbi.2001.1562  1
2001 Slatkin M. Simulating genealogies of selected alleles in a population of variable size. Genetical Research. 78: 49-57. PMID 11556137 DOI: 10.1017/S0016672301005183  1
2001 Slatkin M, Bertorelle G. The use of intraallelic variability for testing neutrality and estimating population growth rate. Genetics. 158: 865-74. PMID 11404347  1
2001 Schliekelman P, Garner C, Slatkin M. Natural selection and resistance to HIV. Nature. 411: 545-6. PMID 11385558 DOI: 10.1038/35079176  1
2000 Slatkin M, Rannala B. Estimating allele age. Annual Review of Genomics and Human Genetics. 1: 225-49. PMID 11701630 DOI: 10.1146/Annurev.Genom.1.1.225  1
2000 Slatkin M. Allele age and a test for selection on rare alleles. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 355: 1663-8. PMID 11127913 DOI: 10.1098/Rstb.2000.0729  1
2000 Slatkin M, Muirhead CA. A method for estimating the intensity of overdominant selection from the distribution of allele frequencies. Genetics. 156: 2119-26. PMID 11102400  1
2000 Rannala B, Slatkin M. Methods for multipoint disease mapping using linkage disequilibrium. Genetic Epidemiology. 19: S71-7. PMID 11055373 DOI: 10.1002/1098-2272(2000)19:1+<::Aid-Gepi11>3.0.Co;2-D  0.32
2000 Rannala B, Slatkin M. Zero-recombinant haplotyping: Applications to fine mapping using SNPs Genetic Epidemiology. 19: S64-S70. PMID 11055372 DOI: 10.1002/1098-2272(2000)19:1+<::AID-GEPI10>3.0.CO;2-G  1
2000 Nielsen R, Slatkin M. Likelihood analysis of ongoing gene flow and historical association. Evolution; International Journal of Organic Evolution. 54: 44-50. PMID 10937182 DOI: 10.1111/J.0014-3820.2000.Tb00006.X  1
2000 Slatkin M. Balancing selection at closely linked, overdominant loci in a finite population. Genetics. 154: 1367-78. PMID 10757776  1
2000 Wiehe T, Mountain J, Parham P, Slatkin M. Distinguishing recombination and intragenic gene conversion by linkage disequilibrium patterns. Genetical Research. 75: 61-73. PMID 10740922 DOI: 10.1017/S0016672399004036  1
1999 Slatkin M, Muirhead CA. Overdominant alleles in a population of variable size. Genetics. 152: 775-81. PMID 10353917  1
1999 Williamson EG, Slatkin M. Using maximum likelihood to estimate population size from temporal changes in allele frequencies. Genetics. 152: 755-61. PMID 10353915  1
1999 Slatkin M. Disequilibrium mapping of a quantitative-trait locus in an expanding population. American Journal of Human Genetics. 64: 1764-72. PMID 10330364 DOI: 10.1086/302413  1
1998 Nielsen R, Mountain JL, Huelsenbeck JP, Slatkin M. MAXIMUM-LIKELIHOOD ESTIMATION OF POPULATION DIVERGENCE TIMES AND POPULATION PHYLOGENY IN MODELS WITHOUT MUTATION. Evolution; International Journal of Organic Evolution. 52: 669-677. PMID 28565245 DOI: 10.1111/J.1558-5646.1998.Tb03692.X  1
1998 Slatkin M, Wiehe T. Genetic hitch-hiking in a subdivided population. Genetical Research. 71: 155-60. PMID 9717437 DOI: 10.1017/S001667239800319X  1
1998 Wiehe T, Slatkin M. Epistatic selection in a multi-locus Levene model and implications for linkage disequilibrium. Theoretical Population Biology. 53: 75-84. PMID 9500912 DOI: 10.1006/Tpbi.1997.1342  1
1998 Rannala B, Slatkin M. Likelihood analysis of disequilibrium mapping, and related problems. American Journal of Human Genetics. 62: 459-73. PMID 9463316 DOI: 10.1086/301709  1
1998 Excoffier L, Slatkin M. Incorporating genotypes of relatives into a test of linkage disequilibrium. American Journal of Human Genetics. 62: 171-80. PMID 9443867 DOI: 10.1086/301674  1
1998 Nielsen R, Mountain JL, Huelsenbeck JP, Slatkin M. Maximum-likelihood estimation of population divergence times and population phylogeny in models without mutation Evolution. 52: 669-677.  1
1997 Slatkin M, Rannala B. The sampling distribution of disease-associated alleles. Genetics. 147: 1855-61. PMID 9409841  1
1997 Freimer NB, Service SK, Slatkin M. Expanding on population studies. Nature Genetics. 17: 371-3. PMID 9398830 DOI: 10.1038/Ng1297-371  1
1997 Slatkin M, Rannala B. Estimating the age of alleles by use of intraallelic variability. American Journal of Human Genetics. 60: 447-58. PMID 9012419  1
1997 Slatkin M. Reply to charlesworth American Naturalist. 149: 604-605. DOI: 10.1086/286010  1
1997 Thomson JD, Slatkin M, Thomson BA. Trapline foraging by bumble bees: II. Definition and detection from sequence data Behavioral Ecology. 8: 199-210.  1
1996 Slatkin M. A correction to the exact test based on the Ewens sampling distribution. Genetical Research. 68: 259-60. PMID 9062082 DOI: 10.1017/S0016672300034236  1
1996 Crouau-Roy B, Service S, Slatkin M, Freimer N. A fine-scale comparison of the human and chimpanzee genomes: linkage, linkage disequilibrium and sequence analysis. Human Molecular Genetics. 5: 1131-7. PMID 8842732 DOI: 10.1093/Hmg/5.8.1131  1
1996 Freimer NB, Slatkin M. Microsatellites: evolution and mutational processes. Ciba Foundation Symposium. 197: 51-67; discussion 67. PMID 8827368  1
1996 Slatkin M. Gene genealogies within mutant allelic classes. Genetics. 143: 579-87. PMID 8722806  1
1996 Michalakis Y, Slatkin M. Interaction of selection and recombination in the fixation of negative-epistatic genes. Genetical Research. 67: 257-69. PMID 8690274 DOI: 10.1017/S0016672300033747  1
1996 Slatkin M, Excoffier L. Testing for linkage disequilibrium in genotypic data using the Expectation-Maximization algorithm. Heredity. 76: 377-83. PMID 8626222 DOI: 10.1038/Hdy.1996.55  1
1996 Freimer NB, Blower S, Slatkin M. Pathogens & strain diversity: is sex disruptive? Nature Medicine. 2: 401-3. PMID 8597947 DOI: 10.1038/Nm0496-401  1
1996 Slatkin M. In defense of founder-flush theories of speciation American Naturalist. 147: 493-505. DOI: 10.1086/285862  1
1995 Slatkin M. Hitchhiking and associative overdominance at a microsatellite locus. Molecular Biology and Evolution. 12: 473-80. PMID 7739389 DOI: 10.1093/Oxfordjournals.Molbev.A040222  1
1995 Slatkin M. A measure of population subdivision based on microsatellite allele frequencies. Genetics. 139: 457-62. PMID 7705646  1
1995 Garza JC, Slatkin M, Freimer NB. Microsatellite allele frequencies in humans and chimpanzees, with implications for constraints on allele size. Molecular Biology and Evolution. 12: 594-603. PMID 7659015 DOI: 10.1093/Oxfordjournals.Molbev.A040239  1
1995 Peterson AC, Di Rienzo A, Lehesjoki AE, de la Chapelle A, Slatkin M, Freimer NB. The distribution of linkage disequilibrium over anonymous genome regions. Human Molecular Genetics. 4: 887-94. PMID 7633449 DOI: 10.1093/Hmg/4.5.887  1
1995 Excoffier L, Slatkin M. Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Molecular Biology and Evolution. 12: 921-7. PMID 7476138 DOI: 10.1093/Oxfordjournals.Molbev.A040269  1
1995 Bertorelle G, Slatkin M. The number of segregating sites in expanding human populations, with implications for estimates of demographic parameters. Molecular Biology and Evolution. 12: 887-92. PMID 7476134  1
1995 Slatkin M. Epistatic selection opposed by immigration in multiple locus genetic systems Journal of Evolutionary Biology. 8: 623-633. DOI: 10.1046/J.1420-9101.1995.8050623.X  1
1994 Di Rienzo A, Peterson AC, Garza JC, Valdes AM, Slatkin M, Freimer NB. Mutational processes of simple-sequence repeat loci in human populations. Proceedings of the National Academy of Sciences of the United States of America. 91: 3166-70. PMID 8159720  1
1994 Slatkin M. Linkage disequilibrium in growing and stable populations. Genetics. 137: 331-6. PMID 8056320  1
1994 Vekemans X, Slatkin M. Gene and allelic genealogies at a gametophytic self-incompatibility locus. Genetics. 137: 1157-65. PMID 7982569  1
1994 Slatkin M. An exact test for neutrality based on the Ewens sampling distribution. Genetical Research. 64: 71-4. PMID 7958833 DOI: 10.1017/S0016672300032560  1
1994 Slatkin M, Lande R. Segregation variance after hybridization of isolated populations. Genetical Research. 64: 51-6. PMID 7958831 DOI: 10.1017/S0016672300032547  1
1994 Alvarez-Buylla ER, Slatkin M. Finding confidence limits on population growth rates: Three real examples revised Ecology. 75: 255-260. DOI: 10.2307/1939401  1
1994 Olivieri I, Couvet D, Slatkin M. Allocation of reproductive effort in perennial plants under pollen limitation American Naturalist. 144: 373-394. DOI: 10.1086/285682  0.44
1993 Valdes AM, Slatkin M, Freimer NB. Allele frequencies at microsatellite loci: the stepwise mutation model revisited. Genetics. 133: 737-49. PMID 8454213  1
1993 Alvarez-Buylla ER, Slatkin M. Finding confidence limits on population growth rates: Monte Carlo test of a simple analytic method Oikos. 68: 273-282. DOI: 10.2307/3544840  1
1992 Frank SA, Slatkin M. Fisher's fundamental theorem of natural selection. Trends in Ecology & Evolution. 7: 92-5. PMID 21235964 DOI: 10.1016/0169-5347(92)90248-A  1
1992 Hudson RR, Slatkin M, Maddison WP. Estimation of levels of gene flow from DNA sequence data. Genetics. 132: 583-9. PMID 1427045  1
1991 Maddison WP, Slatkin M. NULL MODELS FOR THE NUMBER OF EVOLUTIONARY STEPS IN A CHARACTER ON A PHYLOGENETIC TREE. Evolution; International Journal of Organic Evolution. 45: 1184-1197. PMID 28564173 DOI: 10.1111/J.1558-5646.1991.Tb04385.X  0.48
1991 Alvarez-Buylla ER, Slatkin M. Finding confidence limits on population growth rates. Trends in Ecology & Evolution. 6: 221-4. PMID 21232463 DOI: 10.1016/0169-5347(91)90026-T  1
1991 Slatkin M, Voelm L. FST in a hierarchical island model. Genetics. 127: 627-9. PMID 2016058  1
1991 Slatkin M. Inbreeding coefficients and coalescence times. Genetical Research. 58: 167-75. PMID 1765264 DOI: 10.1017/S0016672300029827  1
1991 Slatkin M, Hudson RR. Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics. 129: 555-62. PMID 1743491  1
1991 Slatkin M, Arter HE. Spatial autocorrelation methods in population genetics American Naturalist. 138: 499-517. DOI: 10.1086/285228  1
1991 Maddison WP, Slatkin M. Null models for the number of evolutionary steps in a character on a phylogenetic tree Evolution. 45: 1184-1197.  1
1990 Frank SA, Slatkin M. The distribution of allelic effects under mutation and selection. Genetical Research. 55: 111-7. PMID 2370007  1
1990 Slatkin M, Frank SA. The quantitative genetic consequences of pleiotropy under stabilizing and directional selection. Genetics. 125: 207-13. PMID 2341033  1
1990 Takahata N, Slatkin M. Genealogy of neutral genes in two partially isolated populations. Theoretical Population Biology. 38: 331-50. PMID 2293402 DOI: 10.1016/0040-5809(90)90018-Q  1
1990 Slatkin M, Maddison WP. Detecting isolation by distance using phylogenies of genes. Genetics. 126: 249-60. PMID 2227384  0.48
1990 Frank SA, Slatkin M. Evolution in a variable environment American Naturalist. 136: 244-260. DOI: 10.1086/285094  1
1989 Slatkin M, Barton NH. A COMPARISON OF THREE INDIRECT METHODS FOR ESTIMATING AVERAGE LEVELS OF GENE FLOW. Evolution; International Journal of Organic Evolution. 43: 1349-1368. PMID 28564250 DOI: 10.1111/J.1558-5646.1989.Tb02587.X  1
1989 Slatkin M. Detecting small amounts of gene flow from phylogenies of alleles. Genetics. 121: 609-12. PMID 2714639  1
1989 Lenski RE, Slatkin M, Ayala FJ. Mutation and selection in bacterial populations: alternatives to the hypothesis of directed mutation. Proceedings of the National Academy of Sciences of the United States of America. 86: 2775-8. PMID 2704747 DOI: 10.1073/Pnas.86.8.2775  1
1989 Slatkin M. Population structure and evolutionary progress. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 31: 196-202. PMID 2687091 DOI: 10.1139/G89-034  1
1989 Lenski RE, Slatkin M, Ayala FJ. Another alternative to directed mutation. Nature. 337: 123-4. PMID 2643054 DOI: 10.1038/337123B0  1
1989 Slatkin M, Maddison WP. A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics. 123: 603-13. PMID 2599370  1
1988 Seperack P, Slatkin M, Arnheim N. Linkage disequilibrium in human ribosomal genes: implications for multigene family evolution. Genetics. 119: 943-9. PMID 2900795  1
1987 Slatkin M. The average number of sites separating DNA sequences drawn from a subdivided population. Theoretical Population Biology. 32: 42-9. PMID 3660274 DOI: 10.1016/0040-5809(87)90038-4  1
1987 Slatkin M. Heritable variation and heterozygosity under a balance between mutations and stabilizing selection Genetical Research. 50: 53-62. PMID 3653689 DOI: 10.1017/S0016672300023338  1
1987 Slatkin M. Gene flow and the geographic structure of natural populations Science. 236: 787-792. PMID 3576198 DOI: 10.1126/Science.3576198  1
1986 Slatkin M. Interchromosomal biased gene conversion, mutation and selection in a multigene family Genetics. 112: 681-698. PMID 3957007  1
1986 Takahata N, Slatkin M. Private alleles in a partially isolated population II. Distribution of persistence time and probability of emigration Theoretical Population Biology. 30: 180-193. PMID 3787501 DOI: 10.1016/0040-5809(86)90032-8  1
1986 Barton NH, Slatkin M. A quasi-equilibrium theory of the distribution of rare alleles in a subdivided population Heredity. 56: Pt 3/-. PMID 3733460 DOI: 10.1038/Hdy.1986.63  1
1985 Slatkin M. Genetic differentiation of transposable elements under mutation and unbiased gene conversion Genetics. 110: 145-158. PMID 2987084  1
1985 Slatkin M. Gene flow in natural populations Annual Review of Ecology and Systematics. Vol. 16. 393-430. DOI: 10.1146/Annurev.Es.16.110185.002141  1
1985 Slatkin M, Takahata N. The average frequency of private alleles in a partially isolated population Theoretical Population Biology. 28: 314-331. DOI: 10.1016/0040-5809(85)90032-2  1
1985 Slatkin M. Rare alleles as indicators of gene flow Evolution. 39: 53-65.  1
1984 Takahata N, Slatkin M. Mitochondrial gene flow Proceedings of the National Academy of Sciences of the United States of America. 81: 1764-1767. PMID 6584909 DOI: 10.1073/Pnas.81.6.1764  1
1984 Slatkin M, Anderson DJ. A model of competition for space Ecology. 65: 1840-1845.  1
1984 Slatkin M. Ecological causes of sexual dimorphism Evolution. 38: 622-630.  1
1983 Takahata N, Slatkin M. Evolutionary dynamics of extranuclear genes Genetical Research. 42: 257-265. DOI: 10.1017/S0016672300021753  1
1982 Charlesworth B, Lande R, Slatkin M. A NEO-DARWINIAN COMMENTARY ON MACROEVOLUTION. Evolution; International Journal of Organic Evolution. 36: 474-498. PMID 28568049 DOI: 10.1111/J.1558-5646.1982.Tb05068.X  1
1982 Harvey PH, Slatkin M. Some like it hot: temperature-determined sex Nature. 296: 807-808. PMID 7070522 DOI: 10.1038/296807A0  1
1982 Slatkin M. Testing neutrality in subdivided populations Genetics. 100: 533-545.  1
1981 Sawyer S, Slatkin M. Density independent fluctuations of population size Theoretical Population Biology. 19: 37-57. DOI: 10.1016/0040-5809(81)90034-4  1
1981 Slatkin M. Estimating levels of gene flow in natural populations Genetics. 99: 323-335.  1
1980 Slatkin M. The distribution of mutant allelles in a subdivided population Genetics. 95: 503-523. PMID 7203005  1
1979 Slatkin M, Thomson G, Sawyer S. Genetic drift in sex-linked lethal disorders American Journal of Human Genetics. 31: 156-160. PMID 453200  1
1979 Slatkin M, Wilson DS. Coevolution in structured demes. Proceedings of the National Academy of Sciences of the United States of America. 76: 2084-7. PMID 287048  1
1979 Slatkin M. A note on the symmetry constraints imposed by dominance in multiple locus genetic models Genetical Research. 33: 81-88. DOI: 10.1017/S0016672300018188  1
1979 Slatkin M. Frequency- and density-dependent selection on a quantitative character Genetics. 93: 755-771.  1
1978 Slatkin M. Spatial patterns in the distributions of polygenic characters Journal of Theoretical Biology. 70: 213-228. PMID 633917 DOI: 10.1016/0022-5193(78)90348-X  1
1978 Slatkin M, Wade MJ. Group selection on a quantitative character Proceedings of the National Academy of Sciences of the United States of America. 75: 3531-3534.  1
1978 Slatkin M, Charlesworth D. The spatial distribution of transient alleles in a subdivided population: a simulation study Genetics. 89: 793-810.  1
1977 Slatkin M. Gene flow and genetic drift in a species subject to frequent local extinctions Theoretical Population Biology. 12: 253-262. PMID 601717 DOI: 10.1016/0040-5809(77)90045-4  1
1976 Huey RB, Slatkin M. Cost and benefits of lizard thermoregulation. The Quarterly Review of Biology. 51: 363-84. PMID 981504  1
1976 Slatkin M, Hausfater G. A note on the activities of a solitary male baboon Primates. 17: 311-322. DOI: 10.1007/Bf02382788  1
1975 Slatkin M. Gene flow and selection in a two locus system Genetics. 81: 787-802. PMID 1213276  1
1975 Slatkin M, Maruyama T. Genetic drift in a cline Genetics. 81: 209-222. PMID 1205126  1
1974 Slatkin M. Cascading speciation Nature. 252: 701-702. PMID 4437620 DOI: 10.1038/252701a0  1
1974 Kiester AR, Slatkin M. A strategy of movement and resource utilization Theoretical Population Biology. 6: 1-20. PMID 4423637 DOI: 10.1016/0040-5809(74)90028-8  1
1974 Slatkin M. Hedging one's evolutionary bets Nature. 250: 704-705. DOI: 10.1038/250704B0  1
1973 Slatkin M. Gene flow and selection in a cline Genetics. 75: 733-756. PMID 4778791  1
1972 Slatkin M. On treating the chromosome as the unit of selection Genetics. 72: 157-168. PMID 4672513  1
1970 Slatkin M. Selection and polygenic characters Proceedings of the National Academy of Sciences of the United States of America. 66: 87-93. PMID 5273903 DOI: 10.1073/Pnas.66.1.87  1
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