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Yang Shi - Publications

Affiliations: 
Harvard Medical School - Boston Children's Hospital 
Area:
Epigenetics
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Year Citation  Score
2024 Karwacki-Neisius V, Jang A, Cukuroglu E, Tai A, Jiao A, Predes D, Yoon J, Brookes E, Chen J, Iberg A, Halbritter F, Õunap K, Gecz J, Schlaeger TM, Ho Sui S, ... ... Shi Y, et al. WNT signalling control by KDM5C during development affects cognition. Nature. PMID 38383780 DOI: 10.1038/s41586-024-07067-y  0.768
2023 Zhang G, Jiang P, Tang W, Wang Y, Qiu F, An J, Zheng Y, Wu D, Zhou J, Neculai D, Shi Y, Sheng W. CPT1A induction following epigenetic perturbation promotes MAVS palmitoylation and activation to potentiate antitumor immunity. Molecular Cell. PMID 38016475 DOI: 10.1016/j.molcel.2023.10.043  0.785
2023 Ng J, Marneth AE, Griffith A, Younger D, Ghanta S, Jiao A, Willis G, Han J, Imani J, Niu B, Keegan JW, Hancock B, Guo F, Shi Y, Perrella MA, et al. Mesenchymal Stromal Cells Facilitate Neutrophil Trained Immunity by Reprogramming Hematopoietic Stem Cells. Journal of Innate Immunity. PMID 37797588 DOI: 10.1159/000533732  0.768
2023 Mu M, Li X, Dong L, Wang J, Cai Q, Hu Y, Wang D, Zhao P, Zhang L, Zhang D, Cheng S, Tan L, Wu F, Shi YG, Xu W, ... Shi Y, et al. METTL14 regulates chromatin bivalent domains in mouse embryonic stem cells. Cell Reports. 42: 112650. PMID 37314930 DOI: 10.1016/j.celrep.2023.112650  0.309
2023 Li L, He Z, Shi Y, Sun H, Yuan B, Cai J, Chen J, Long M. Role of epigenetics in mycotoxin toxicity: a review. Environmental Toxicology and Pharmacology. 104154. PMID 37209890 DOI: 10.1016/j.etap.2023.104154  0.305
2023 Sendinc E, Shi Y. RNA m6A methylation across the transcriptome. Molecular Cell. 83: 428-441. PMID 36736310 DOI: 10.1016/j.molcel.2023.01.006  0.795
2022 Panditharatna E, G Marques J, Wang T, Trissal MC, Liu I, Jiang L, Beck A, Groves A, Dharia NV, Li D, Hoffman SE, Kugener G, Shaw ML, Mire HM, Hack OA, ... ... Shi Y, et al. BAF complex maintains glioma stem cells in pediatric H3K27M-glioma. Cancer Discovery. PMID 36305736 DOI: 10.1158/2159-8290.CD-21-1491  0.762
2022 Zhou C, Huang H, Wang Y, Sendinc E, Shi Y. Selective regulation of tuft cell-like small cell lung cancer by novel transcriptional co-activators C11orf53 and COLCA2. Cell Discovery. 8: 112. PMID 36253350 DOI: 10.1038/s41421-022-00470-7  0.773
2022 Chu Z, Gu L, Hu Y, Zhang X, Li M, Chen J, Teng D, Huang M, Shen CH, Cai L, Yoshida T, Qi Y, Niu Z, Feng A, Geng S, ... ... Shi Y, et al. STAG2 regulates interferon signaling in melanoma via enhancer loop reprogramming. Nature Communications. 13: 1859. PMID 35388001 DOI: 10.1038/s41467-022-29541-9  0.491
2022 Xu W, He C, Kaye EG, Li J, Mu M, Nelson GM, Dong L, Wang J, Wu F, Shi YG, Adelman K, Lan F, Shi Y, Shen H. Dynamic control of chromatin-associated mA methylation regulates nascent RNA synthesis. Molecular Cell. PMID 35219383 DOI: 10.1016/j.molcel.2022.02.006  0.319
2022 Liu Y, Debo B, Li M, Shi Z, Sheng W, Shi Y. Author Correction: LSD1 inhibition sustains T cell invigoration with a durable response to PD-1 blockade. Nature Communications. 13: 263. PMID 34987158 DOI: 10.1038/s41467-021-27814-3  0.752
2021 Liu Y, Debo B, Li M, Shi Z, Sheng W, Shi Y. LSD1 inhibition sustains T cell invigoration with a durable response to PD-1 blockade. Nature Communications. 12: 6831. PMID 34819502 DOI: 10.1038/s41467-021-27179-7  0.776
2021 Blanco MA, Sykes DB, Gu L, Wu M, Petroni R, Karnik R, Wawer M, Rico J, Li H, Jacobus WD, Jambhekar A, Cheloufi S, Meissner A, Hochedlinger K, Scadden DT, ... Shi Y, et al. Chromatin-state barriers enforce an irreversible mammalian cell fate decision. Cell Reports. 37: 109967. PMID 34758323 DOI: 10.1016/j.celrep.2021.109967  0.463
2021 Zee BM, Poels KE, Yao CH, Kawabata KC, Wu G, Duy C, Jacobus WD, Senior E, Endress JE, Jambhekar A, Lovitch SB, Ma J, Dhall A, Harris IS, Blanco MA, ... ... Shi Y, et al. Combined epigenetic and metabolic treatments overcome differentiation blockade in acute myeloid leukemia. Iscience. 24: 102651. PMID 34151238 DOI: 10.1016/j.isci.2021.102651  0.796
2021 Sheng W, Liu Y, Chakraborty D, Debo B, Shi Y. Simultaneous Inhibition of LSD1 and TGF-B Enables Eradication of Poorly Immunogenic Tumors with anti-PD-1 Treatment. Cancer Discovery. PMID 33687985 DOI: 10.1158/2159-8290.CD-20-0017  0.774
2021 Xu W, Li J, He C, Wen J, Ma H, Rong B, Diao J, Wang L, Wang J, Wu F, Tan L, Shi YG, Shi Y, Shen H. METTL3 regulates heterochromatin in mouse embryonic stem cells. Nature. PMID 33505026 DOI: 10.1038/s41586-021-03210-1  0.364
2021 Shi Y, Shi Q, Shen Q, Zhang Q, Cao X. Dicer-independent snRNA/snoRNA-derived nuclear RNA 3 regulates tumor-associated macrophage function by epigenetically repressing inducible nitric oxide synthase transcription. Cancer Communications (London, England). PMID 33455092 DOI: 10.1002/cac2.12131  0.324
2020 Sendinc E, Valle-Garcia D, Jiao A, Shi Y. Analysis of m6A RNA methylation in Caenorhabditis elegans. Cell Discovery. 6: 47. PMID 34257275 DOI: 10.1038/s41421-020-00186-6  0.784
2020 Gu L, Wang L, Chen H, Hong J, Shen Z, Dhall A, Lao T, Liu C, Wang Z, Xu Y, Tang HW, Chakraborty D, Chen J, Liu Z, Rogulja D, ... ... Shi Y, et al. CG14906 (mettl4) mediates mA methylation of U2 snRNA in Drosophila. Cell Discovery. 6: 44. PMID 34188020 DOI: 10.1038/s41421-020-0178-7  0.749
2020 Mikutis S, Gu M, Sendinc E, Hazemi ME, Kiely-Collins H, Aspris D, Vassiliou GS, Shi Y, Tzelepis K, Bernardes GJL. meCLICK-Seq, a Substrate-Hijacking and RNA Degradation Strategy for the Study of RNA Methylation. Acs Central Science. 6: 2196-2208. PMID 33376781 DOI: 10.1021/acscentsci.0c01094  0.781
2020 Cui J, Liu Q, Sendinc E, Shi Y, Gregory RI. Nucleotide resolution profiling of m3C RNA modification by HAC-seq. Nucleic Acids Research. PMID 33313824 DOI: 10.1093/nar/gkaa1186  0.78
2020 Jiao F, Li Z, He C, Xu W, Yang G, Liu T, Shen H, Cai J, Anastas JN, Mao Y, Yu Y, Lan F, Shi YG, Jones C, Xu Y, ... ... Shi Y, et al. RACK7 recognizes H3.3G34R mutation to suppress expression of MHC class II complex components and their delivery pathway in pediatric glioblastoma. Science Advances. 6: eaba2113. PMID 32832624 DOI: 10.1126/Sciadv.Aba2113  0.754
2020 Sendinc E, Valle-Garcia D, Jiao A, Shi Y. Analysis of m6A RNA methylation in . Cell Discovery. 6: 47. PMID 32695436 DOI: 10.1038/S41421-020-00186-6  0.782
2020 Gu L, Wang L, Chen H, Hong J, Shen Z, Dhall A, Lao T, Liu C, Wang Z, Xu Y, Tang HW, Chakraborty D, Chen J, Liu Z, Rogulja D, ... ... Shi Y, et al. CG14906 (mettl4) mediates mA methylation of U2 snRNA in . Cell Discovery. 6: 44. PMID 32637152 DOI: 10.1038/S41421-020-0178-7  0.783
2020 Chen H, Shi Z, Guo J, Chang KJ, Chen Q, Yao CH, Haigis MC, Shi Y. The human mitochondrial 12S rRNA mC methyltransferase METTL15 is required for mitochondrial function. The Journal of Biological Chemistry. PMID 32371392 DOI: 10.1074/Jbc.Ra119.012127  0.773
2020 Li W, Karwacki-Neisius V, Ma C, Tan L, Shi Y, Wu F, Shi YG. Nono deficiency compromises TET1 chromatin association and impedes neuronal differentiation of mouse embryonic stem cells. Nucleic Acids Research. PMID 32286661 DOI: 10.1093/Nar/Gkaa213  0.793
2020 Chen H, Gu L, Orellana EA, Wang Y, Guo J, Liu Q, Wang L, Shen Z, Wu H, Gregory RI, Xing Y, Shi Y. METTL4 is an snRNA mAm methyltransferase that regulates RNA splicing. Cell Research. PMID 31913360 DOI: 10.1038/S41422-019-0270-4  0.531
2019 Jambhekar A, Dhall A, Shi Y. Author Correction: Roles and regulation of histone methylation in animal development. Nature Reviews. Molecular Cell Biology. PMID 31700131 DOI: 10.1038/S41580-019-0192-5  0.755
2019 Anastas JN, Zee BM, Kalin JH, Kim M, Guo R, Alexandrescu S, Blanco MA, Giera S, Gillespie SM, Das J, Wu M, Nocco S, Bonal DM, Nguyen QD, Suva ML, ... ... Shi Y, et al. Re-programing Chromatin with a Bifunctional LSD1/HDAC Inhibitor Induces Therapeutic Differentiation in DIPG. Cancer Cell. PMID 31631026 DOI: 10.1016/J.Ccell.2019.09.005  0.802
2019 Sendinc E, Valle-Garcia D, Dhall A, Chen H, Henriques T, Navarrete-Perea J, Sheng W, Gygi SP, Adelman K, Shi Y. PCIF1 Catalyzes m6Am mRNA Methylation to Regulate Gene Expression. Molecular Cell. PMID 31279659 DOI: 10.1016/J.Molcel.2019.05.030  0.773
2019 Jambhekar A, Dhall A, Shi Y. Roles and regulation of histone methylation in animal development. Nature Reviews. Molecular Cell Biology. PMID 31267065 DOI: 10.1038/S41580-019-0151-1  0.778
2019 Zhang J, Lee YR, Dang F, Gan W, Menon AV, Katon JM, Hsu CH, Asara JM, Tibarewal P, Leslie NR, Shi Y, Pandolfi PP, Wei W. PTEN Methylation by NSD2 Controls Cellular Sensitivity to DNA Damage. Cancer Discovery. PMID 31217297 DOI: 10.1158/2159-8290.Cd-18-0083  0.59
2019 O'Brown ZK, Boulias K, Wang J, Wang SY, O'Brown NM, Hao Z, Shibuya H, Fady PE, Shi Y, He C, Megason SG, Liu T, Greer EL. Sources of artifact in measurements of 6mA and 4mC abundance in eukaryotic genomic DNA. Bmc Genomics. 20: 445. PMID 31159718 DOI: 10.1186/S12864-019-5754-6  0.323
2019 Anastas JN, Shi Y. Histone Serotonylation: Can the Brain Have "Happy" Chromatin? Molecular Cell. 74: 418-420. PMID 31051139 DOI: 10.1016/J.Molcel.2019.04.017  0.759
2019 Guo J, Dai X, Laurent B, Zheng N, Gan W, Zhang J, Guo A, Yuan M, Liu P, Asara JM, Toker A, Shi Y, Pandolfi PP, Wei W. AKT methylation by SETDB1 promotes AKT kinase activity and oncogenic functions. Nature Cell Biology. PMID 30692625 DOI: 10.1038/S41556-018-0261-6  0.355
2019 Byrum AK, Carvajal-Maldonado D, Mudge MC, Valle-Garcia D, Majid MC, Patel R, Sowa ME, Gygi SP, Harper JW, Shi Y, Vindigni A, Mosammaparast N. Mitotic regulators TPX2 and Aurora A protect DNA forks during replication stress by counteracting 53BP1 function. The Journal of Cell Biology. PMID 30602538 DOI: 10.1083/Jcb.201803003  0.317
2019 Ma H, Wang X, Cai J, Dai Q, Natchiar SK, Lv R, Chen K, Lu Z, Chen H, Shi YG, Lan F, Fan J, Klaholz BP, Pan T, Shi Y, et al. NMethyladenosine methyltransferase ZCCHC4 mediates ribosomal RNA methylation. Nature Chemical Biology. 15: 88-94. PMID 30531910 DOI: 10.1038/S41589-018-0184-3  0.386
2018 Sheng W, LaFleur MW, Nguyen TH, Chen S, Chakravarthy A, Conway JR, Li Y, Chen H, Yang H, Hsu PH, Van Allen EM, Freeman GJ, De Carvalho DD, He HH, Sharpe AH, ... Shi Y, et al. LSD1 Ablation Stimulates Anti-tumor Immunity and Enables Checkpoint Blockade. Cell. PMID 29937226 DOI: 10.1016/J.Cell.2018.05.052  0.793
2018 Wen J, Lv R, Ma H, Shen H, He C, Wang J, Jiao F, Liu H, Yang P, Tan L, Lan F, Shi YG, He C, Shi Y, Diao J. Zc3h13 Regulates Nuclear RNA mA Methylation and Mouse Embryonic Stem Cell Self-Renewal. Molecular Cell. 69: 1028-1038.e6. PMID 29547716 DOI: 10.1016/J.Molcel.2018.02.015  0.417
2018 Jha D, Daley GQ, Laurent B, Zhang C, Kubaczka C, Chapuy B, Sousa P, Missios P, Rowe RG, Huang Y, Tan Y, Barragan J, North T, Schlaeger T, Li H, ... Shi Y, et al. Novel Epigenetic Vulnerabilities for Diffuse Large B-Cell Lymphoma Blood. 132: 2600-2600. DOI: 10.1182/Blood-2018-99-115030  0.404
2018 Anastas J, Filbin M, Kim M, Kalin J, Zee B, Blanco A, Das J, Golub T, Cole P, Shi Y. Gene-22. Re-Programing Chromatin With A Bifunctional Lsd1/Hdac Inhibitor Induces Therapeutic Differentiation In Dipg Neuro-Oncology. 20. DOI: 10.1093/Neuonc/Noy148.448  0.331
2017 Xiang Y, Laurent B, Hsu CH, Nachtergaele S, Lu Z, Sheng W, Xu C, Chen H, Ouyang J, Wang S, Ling D, Hsu PH, Zou L, Jambhekar A, He C, ... Shi Y, et al. Corrigendum: RNA m6A methylation regulates the ultraviolet-induced DNA damage response. Nature. PMID 29186122 DOI: 10.1038/Nature24007  0.795
2017 Tan L, Ke Z, Tombline G, Macoretta N, Hayes K, Tian X, Lv R, Ablaeva J, Gilbert M, Bhanu NV, Yuan ZF, Garcia BA, Shi YG, Shi Y, Seluanov A, et al. Naked Mole Rat Cells Have a Stable Epigenome that Resists iPSC Reprogramming. Stem Cell Reports. PMID 29107597 DOI: 10.1016/J.Stemcr.2017.10.001  0.515
2017 Scandaglia M, Lopez-Atalaya JP, Medrano-Fernandez A, Lopez-Cascales MT, Del Blanco B, Lipinski M, Benito E, Olivares R, Iwase S, Shi Y, Barco A. Loss of Kdm5c Causes Spurious Transcription and Prevents the Fine-Tuning of Activity-Regulated Enhancers in Neurons. Cell Reports. 21: 47-59. PMID 28978483 DOI: 10.1016/J.Celrep.2017.09.014  0.355
2017 Li H, Liefke R, Jiang J, Kurland JV, Tian W, Deng P, Zhang W, He Q, Patel DJ, Bulyk ML, Shi Y, Wang Z. Polycomb-like proteins link the PRC2 complex to CpG islands. Nature. PMID 28869966 DOI: 10.1038/Nature23881  0.406
2017 Murn J, Shi Y. The winding path of protein methylation research: milestones and new frontiers. Nature Reviews. Molecular Cell Biology. PMID 28512349 DOI: 10.1038/Nrm.2017.35  0.352
2017 Xiang Y, Laurent B, Hsu CH, Nachtergaele S, Lu Z, Sheng W, Xu C, Chen H, Ouyang J, Wang S, Ling D, Hsu PH, Zou L, Jambhekar A, He C, ... Shi Y, et al. RNA m(6)A methylation regulates the ultraviolet-induced DNA damage response. Nature. PMID 28297716 DOI: 10.1038/Nature21671  0.78
2017 Liefke R, Karwacki-Neisius V, Shi Y. EPOP Interacts with Elongin BC and USP7 to Modulate the Chromatin Landscape. Molecular Cell. 65: 202. PMID 28061330 DOI: 10.1016/J.Molcel.2016.12.006  0.769
2017 Jambhekar A, Anastas JN, Shi Y. Histone Lysine Demethylase Inhibitors. Cold Spring Harbor Perspectives in Medicine. 7. PMID 28049654 DOI: 10.1101/Cshperspect.A026484  0.771
2016 Liefke R, Karwacki-Neisius V, Shi Y. EPOP Interacts with Elongin BC and USP7 to Modulate the Chromatin Landscape. Molecular Cell. 64: 659-672. PMID 27863226 DOI: 10.1016/J.Molcel.2016.10.019  0.8
2016 Ma C, Karwacki-Neisius V, Tang H, Li W, Shi Z, Hu H, Xu W, Wang Z, Kong L, Lv R, Fan Z, Zhou W, Yang P, Wu F, Diao J, ... Shi YG, ... Shi Y, et al. Nono, a Bivalent Domain Factor, Regulates Erk Signaling and Mouse Embryonic Stem Cell Pluripotency. Cell Reports. 17: 997-1007. PMID 27760330 DOI: 10.1016/J.Celrep.2016.09.078  0.791
2016 Aranda S, Shi Y, Di Croce L. Chromatin and epigenetics at the forefront: finding clues among peaks. Molecular and Cellular Biology. PMID 27402863 DOI: 10.1128/Mcb.00328-16  0.347
2016 Kong L, Tan L, Lv R, Shi Z, Xiong L, Wu F, Rabidou K, Smith M, He C, Zhang L, Qian Y, Ma D, Lan F, Shi Y, Shi YG. A primary role of TET proteins in establishment and maintenance of De Novo bivalency at CpG islands. Nucleic Acids Research. PMID 27288448 DOI: 10.1093/Nar/Gkw529  0.791
2016 Shen H, Xu W, Guo R, Rong B, Gu L, Wang Z, He C, Zheng L, Hu X, Hu Z, Shao ZM, Yang P, Wu F, Shi YG, Shi Y, et al. Suppression of Enhancer Overactivation by a RACK7-Histone Demethylase Complex. Cell. 165: 331-342. PMID 27058665 DOI: 10.1016/J.Cell.2016.02.064  0.517
2016 Iwase S, Brookes E, Agarwal S, Badeaux AI, Ito H, Vallianatos CN, Tomassy GS, Kasza T, Lin G, Thompson A, Gu L, Kwan KY, Chen C, Sartor MA, Egan B, ... Shi Y, et al. A Mouse Model of X-linked Intellectual Disability Associated with Impaired Removal of Histone Methylation. Cell Reports. PMID 26804915 DOI: 10.1016/J.Celrep.2015.12.091  0.553
2015 Liefke R, Shi Y. The PRC2-associated factor C17orf96 is a novel CpG island regulator in mouse ES cells. Cell Discovery. 1: 15008. PMID 27462409 DOI: 10.1038/Celldisc.2015.8  0.463
2015 Greer EL, Becker B, Latza C, Antebi A, Shi Y. Mutation of C. elegans demethylase spr-5 extends transgenerational longevity. Cell Research. PMID 26691751 DOI: 10.1038/Cr.2015.148  0.348
2015 Cheloufi S, Elling U, Hopfgartner B, Jung YL, Murn J, Ninova M, Hubmann M, Badeaux AI, Euong Ang C, Tenen D, Wesche DJ, Abazova N, Hogue M, Tasdemir N, Brumbaugh J, ... ... Shi Y, et al. The histone chaperone CAF-1 safeguards somatic cell identity. Nature. 528: 218-224. PMID 26659182 DOI: 10.1038/Nature15749  0.432
2015 Murn J, Teplova M, Zarnack K, Shi Y, Patel DJ. Recognition of distinct RNA motifs by the clustered CCCH zinc fingers of neuronal protein Unkempt. Nature Structural & Molecular Biology. PMID 26641712 DOI: 10.1038/Nsmb.3140  0.319
2015 Luo GZ, Blanco MA, Greer EL, He C, Shi Y. DNA N(6)-methyladenine: a new epigenetic mark in eukaryotes? Nature Reviews. Molecular Cell Biology. PMID 26507168 DOI: 10.1038/Nrm4076  0.374
2015 Chen M, Zhu N, Liu X, Laurent B, Tang Z, Eng R, Shi Y, Armstrong SA, Roeder RG. JMJD1C is required for the survival of acute myeloid leukemia by functioning as a coactivator for key transcription factors. Genes & Development. 29: 2123-39. PMID 26494788 DOI: 10.1101/Gad.267278.115  0.362
2015 van Oevelen C, Collombet S, Vicent G, Hoogenkamp M, Lepoivre C, Badeaux A, Bussmann L, Sardina JL, Thieffry D, Beato M, Shi Y, Bonifer C, Graf T. C/EBPα Activates Pre-existing and De Novo Macrophage Enhancers during Induced Pre-B Cell Transdifferentiation and Myelopoiesis. Stem Cell Reports. PMID 26235892 DOI: 10.1016/J.Stemcr.2015.06.007  0.309
2015 Sendinc E, Jambhekar A, Shi Y. Remodeling Your Way out of Cell Cycle. Cell. 162: 237-8. PMID 26186182 DOI: 10.1016/J.Cell.2015.06.050  0.786
2015 Greer EL, Blanco MA, Gu L, Sendinc E, Liu J, Aristizábal-Corrales D, Hsu CH, Aravind L, He C, Shi Y. DNA Methylation on N(6)-Adenine in C. elegans. Cell. 161: 868-78. PMID 25936839 DOI: 10.1016/J.Cell.2015.04.005  0.792
2015 Murn J, Zarnack K, Yang YJ, Durak O, Murphy EA, Cheloufi S, Gonzalez DM, Teplova M, Curk T, Zuber J, Patel DJ, Ule J, Luscombe NM, Tsai LH, Walsh CA, ... Shi Y, et al. Control of a neuronal morphology program by an RNA-binding zinc finger protein, Unkempt. Genes & Development. 29: 501-12. PMID 25737280 DOI: 10.1101/Gad.258483.115  0.331
2015 Laurent B, Ruitu L, Murn J, Hempel K, Ferrao R, Xiang Y, Liu S, Garcia BA, Wu H, Wu F, Steen H, Shi Y. A specific LSD1/KDM1A isoform regulates neuronal differentiation through H3K9 demethylation. Molecular Cell. 57: 957-70. PMID 25684206 DOI: 10.1016/J.Molcel.2015.01.010  0.488
2015 Brookes E, Laurent B, Õunap K, Carroll R, Moeschler JB, Field M, Schwartz CE, Gecz J, Shi Y. Mutations in the intellectual disability gene KDM5C reduce protein stability and demethylase activity. Human Molecular Genetics. 24: 2861-72. PMID 25666439 DOI: 10.1093/Hmg/Ddv046  0.31
2015 Lan F, Shi Y. Histone H3.3 and cancer: A potential reader connection. Proceedings of the National Academy of Sciences of the United States of America. 112: 6814-9. PMID 25453099 DOI: 10.1073/Pnas.1418996111  0.315
2014 Guo R, Zheng L, Park JW, Lv R, Chen H, Jiao F, Xu W, Mu S, Wen H, Qiu J, Wang Z, Yang P, Wu F, Hui J, Fu X, ... ... Shi YG, ... ... Shi Y, et al. BS69/ZMYND11 reads and connects histone H3.3 lysine 36 trimethylation-decorated chromatin to regulated pre-mRNA processing. Molecular Cell. 56: 298-310. PMID 25263594 DOI: 10.1016/J.Molcel.2014.08.022  0.41
2014 Brookes E, Shi Y. Diverse epigenetic mechanisms of human disease. Annual Review of Genetics. 48: 237-268. PMID 25195505 DOI: 10.1146/Annurev-Genet-120213-092518  0.321
2014 Tsai CL, Shi Y, Tainer JA. How substrate specificity is imposed on a histone demethylase--lessons from KDM2A. Genes & Development. 28: 1735-8. PMID 25128493 DOI: 10.1101/Gad.249755.114  0.401
2014 Alpatov R, Lesch BJ, Nakamoto-Kinoshita M, Blanco A, Chen S, Stützer A, Armache KJ, Simon MD, Xu C, Ali M, Murn J, Prisic S, Kutateladze TG, Vakoc CR, Min J, ... ... Shi Y, et al. A chromatin-dependent role of the fragile X mental retardation protein FMRP in the DNA damage response. Cell. 157: 869-81. PMID 24813610 DOI: 10.1016/J.Cell.2014.03.040  0.343
2014 Greer EL, Beese-Sims SE, Brookes E, Spadafora R, Zhu Y, Rothbart SB, Aristizábal-Corrales D, Chen S, Badeaux AI, Jin Q, Wang W, Strahl BD, Colaiácovo MP, Shi Y. A histone methylation network regulates transgenerational epigenetic memory in C. elegans. Cell Reports. 7: 113-26. PMID 24685137 DOI: 10.1016/J.Celrep.2014.02.044  0.397
2013 Mosammaparast N, Kim H, Laurent B, Zhao Y, Lim HJ, Majid MC, Dango S, Luo Y, Hempel K, Sowa ME, Gygi SP, Steen H, Harper JW, Yankner B, Shi Y. The histone demethylase LSD1/KDM1A promotes the DNA damage response. The Journal of Cell Biology. 203: 457-70. PMID 24217620 DOI: 10.1083/Jcb.201302092  0.364
2013 Lim HJ, Dimova NV, Tan MK, Sigoillot FD, King RW, Shi Y. The G2/M regulator histone demethylase PHF8 is targeted for degradation by the anaphase-promoting complex containing CDC20. Molecular and Cellular Biology. 33: 4166-80. PMID 23979597 DOI: 10.1128/Mcb.00689-13  0.355
2013 Pan X, Papasani M, Hao Y, Calamito M, Wei F, Quinn Iii WJ, Basu A, Wang J, Hodawadekar S, Zaprazna K, Liu H, Shi Y, Allman D, Cancro M, Atchison ML. YY1 controls Igκ repertoire and B-cell development, and localizes with condensin on the Igκ locus. The Embo Journal. 32: 1168-82. PMID 23531880 DOI: 10.1038/Emboj.2013.66  0.302
2013 Badeaux AI, Shi Y. Emerging roles for chromatin as a signal integration and storage platform. Nature Reviews. Molecular Cell Biology. 14: 211-24. PMID 23524488 DOI: 10.1038/Nrm3545  0.369
2013 Chen H, Ma H, Inuzuka H, Diao J, Lan F, Shi YG, Wei W, Shi Y. DNA damage regulates UHRF1 stability via the SCF(β-TrCP) E3 ligase. Molecular and Cellular Biology. 33: 1139-48. PMID 23297342 DOI: 10.1128/Mcb.01191-12  0.321
2012 Yang YJ, Baltus AE, Mathew RS, Murphy EA, Evrony GD, Gonzalez DM, Wang EP, Marshall-Walker CA, Barry BJ, Murn J, Tatarakis A, Mahajan MA, Samuels HH, Shi Y, Golden JA, et al. Microcephaly gene links trithorax and REST/NRSF to control neural stem cell proliferation and differentiation. Cell. 151: 1097-112. PMID 23178126 DOI: 10.1016/J.Cell.2012.10.043  0.381
2012 Ballaré C, Lange M, Lapinaite A, Martin GM, Morey L, Pascual G, Liefke R, Simon B, Shi Y, Gozani O, Carlomagno T, Benitah SA, Di Croce L. Phf19 links methylated Lys36 of histone H3 to regulation of Polycomb activity. Nature Structural & Molecular Biology. 19: 1257-65. PMID 23104054 DOI: 10.1038/Nsmb.2434  0.426
2012 Chen S, Shi Y. A new horizon for epigenetic medicine? Cell Research. 23: 326-8. PMID 22986503 DOI: 10.1038/Cr.2012.136  0.39
2012 Kim HG, Kim HT, Leach NT, Lan F, Ullmann R, Silahtaroglu A, Kurth I, Nowka A, Seong IS, Shen Y, Talkowski ME, Ruderfer D, Lee JH, Glotzbach C, Ha K, ... ... Shi Y, et al. Translocations disrupting PHF21A in the Potocki-Shaffer-syndrome region are associated with intellectual disability and craniofacial anomalies. American Journal of Human Genetics. 91: 56-72. PMID 22770980 DOI: 10.1016/J.Ajhg.2012.05.005  0.359
2012 Chen S, Ma J, Wu F, Xiong LJ, Ma H, Xu W, Lv R, Li X, Villen J, Gygi SP, Liu XS, Shi Y. The histone H3 Lys 27 demethylase JMJD3 regulates gene expression by impacting transcriptional elongation. Genes & Development. 26: 1364-75. PMID 22713873 DOI: 10.1101/Gad.186056.111  0.418
2012 Greer EL, Shi Y. Histone methylation: a dynamic mark in health, disease and inheritance. Nature Reviews. Genetics. 13: 343-57. PMID 22473383 DOI: 10.1038/Nrg3173  0.413
2012 Ma H, Chen H, Guo X, Wang Z, Sowa ME, Zheng L, Hu S, Zeng P, Guo R, Diao J, Lan F, Harper JW, Shi YG, Xu Y, Shi Y. M phase phosphorylation of the epigenetic regulator UHRF1 regulates its physical association with the deubiquitylase USP7 and stability. Proceedings of the National Academy of Sciences of the United States of America. 109: 4828-33. PMID 22411829 DOI: 10.1073/Pnas.1116349109  0.352
2012 Wang Y, Kallgren SP, Reddy BD, Kuntz K, López-Maury L, Thompson J, Watt S, Ma C, Hou H, Shi Y, Yates JR, Bähler J, O'Connell MJ, Jia S. Histone H3 lysine 14 acetylation is required for activation of a DNA damage checkpoint in fission yeast. The Journal of Biological Chemistry. 287: 4386-93. PMID 22184112 DOI: 10.1074/Jbc.M111.329417  0.398
2011 Dango S, Mosammaparast N, Sowa ME, Xiong LJ, Wu F, Park K, Rubin M, Gygi S, Harper JW, Shi Y. DNA unwinding by ASCC3 helicase is coupled to ALKBH3-dependent DNA alkylation repair and cancer cell proliferation. Molecular Cell. 44: 373-84. PMID 22055184 DOI: 10.1016/J.Molcel.2011.08.039  0.327
2011 Greer EL, Maures TJ, Ucar D, Hauswirth AG, Mancini E, Lim JP, Benayoun BA, Shi Y, Brunet A. Transgenerational epigenetic inheritance of longevity in Caenorhabditis elegans. Nature. 479: 365-71. PMID 22012258 DOI: 10.1038/Nature10572  0.38
2011 Rajakumara E, Wang Z, Ma H, Hu L, Chen H, Lin Y, Guo R, Wu F, Li H, Lan F, Shi YG, Xu Y, Patel DJ, Shi Y. PHD finger recognition of unmodified histone H3R2 links UHRF1 to regulation of euchromatic gene expression. Molecular Cell. 43: 275-84. PMID 21777816 DOI: 10.1016/J.Molcel.2011.07.006  0.422
2011 Nottke AC, Beese-Sims SE, Pantalena LF, Reinke V, Shi Y, Colaiácovo MP. SPR-5 is a histone H3K4 demethylase with a role in meiotic double-strand break repair. Proceedings of the National Academy of Sciences of the United States of America. 108: 12805-10. PMID 21768382 DOI: 10.1073/Pnas.1102298108  0.429
2011 Iwase S, Xiang B, Ghosh S, Ren T, Lewis PW, Cochrane JC, Allis CD, Picketts DJ, Patel DJ, Li H, Shi Y. ATRX ADD domain links an atypical histone methylation recognition mechanism to human mental-retardation syndrome. Nature Structural & Molecular Biology. 18: 769-76. PMID 21666679 DOI: 10.1038/Nsmb.2062  0.321
2011 Rahman S, Sowa ME, Ottinger M, Smith JA, Shi Y, Harper JW, Howley PM. The Brd4 extraterminal domain confers transcription activation independent of pTEFb by recruiting multiple proteins, including NSD3. Molecular and Cellular Biology. 31: 2641-52. PMID 21555454 DOI: 10.1128/Mcb.01341-10  0.378
2011 Iwase S, Shi Y. Histone and DNA modifications in mental retardation. Progress in Drug Research. Fortschritte Der Arzneimittelforschung. Progres Des Recherches Pharmaceutiques. 67: 147-73. PMID 21141729 DOI: 10.1007/978-3-7643-8989-5_8  0.356
2010 Yu H, Mashtalir N, Daou S, Hammond-Martel I, Ross J, Sui G, Hart GW, Rauscher FJ, Drobetsky E, Milot E, Shi Y, Affar el B. The ubiquitin carboxyl hydrolase BAP1 forms a ternary complex with YY1 and HCF-1 and is a critical regulator of gene expression. Molecular and Cellular Biology. 30: 5071-85. PMID 20805357 DOI: 10.1128/Mcb.00396-10  0.391
2010 Fang R, Barbera AJ, Xu Y, Rutenberg M, Leonor T, Bi Q, Lan F, Mei P, Yuan GC, Lian C, Peng J, Cheng D, Sui G, Kaiser UB, Shi Y, ... Shi YG, et al. Human LSD2/KDM1b/AOF1 regulates gene transcription by modulating intragenic H3K4me2 methylation. Molecular Cell. 39: 222-33. PMID 20670891 DOI: 10.1016/J.Molcel.2010.07.008  0.437
2010 Qi HH, Sarkissian M, Hu GQ, Wang Z, Bhattacharjee A, Gordon DB, Gonzales M, Lan F, Ongusaha PP, Huarte M, Yaghi NK, Lim H, Garcia BA, Brizuela L, Zhao K, ... ... Shi Y, et al. Histone H4K20/H3K9 demethylase PHF8 regulates zebrafish brain and craniofacial development. Nature. 466: 503-7. PMID 20622853 DOI: 10.1038/Nature09261  0.57
2010 Tsai MC, Manor O, Wan Y, Mosammaparast N, Wang JK, Lan F, Shi Y, Segal E, Chang HY. Long noncoding RNA as modular scaffold of histone modification complexes. Science (New York, N.Y.). 329: 689-93. PMID 20616235 DOI: 10.1126/Science.1192002  0.407
2010 Mosammaparast N, Shi Y. Reversal of histone methylation: biochemical and molecular mechanisms of histone demethylases. Annual Review of Biochemistry. 79: 155-79. PMID 20373914 DOI: 10.1146/Annurev.Biochem.78.070907.103946  0.396
2010 Honda S, Lewis ZA, Huarte M, Cho LY, David LL, Shi Y, Selker EU. The DMM complex prevents spreading of DNA methylation from transposons to nearby genes in Neurospora crassa. Genes & Development. 24: 443-54. PMID 20139222 DOI: 10.1101/Gad.1893210  0.374
2010 Wang JK, Tsai MC, Poulin G, Adler AS, Chen S, Liu H, Shi Y, Chang HY. The histone demethylase UTX enables RB-dependent cell fate control. Genes & Development. 24: 327-32. PMID 20123895 DOI: 10.1101/Gad.1882610  0.424
2010 Horton JR, Upadhyay AK, Qi HH, Zhang X, Shi Y, Cheng X. Enzymatic and structural insights for substrate specificity of a family of jumonji histone lysine demethylases. Nature Structural & Molecular Biology. 17: 38-43. PMID 20023638 DOI: 10.1038/Nsmb.1753  0.361
2009 Wang B, Li S, Qi HH, Chowdhury D, Shi Y, Novina CD. Distinct passenger strand and mRNA cleavage activities of human Argonaute proteins. Nature Structural & Molecular Biology. 16: 1259-66. PMID 19946268 DOI: 10.1038/Nsmb.1712  0.323
2009 Falbo KB, Alabert C, Katou Y, Wu S, Han J, Wehr T, Xiao J, He X, Zhang Z, Shi Y, Shirahige K, Pasero P, Shen X. Involvement of a chromatin remodeling complex in damage tolerance during DNA replication. Nature Structural & Molecular Biology. 16: 1167-72. PMID 19855395 DOI: 10.1038/Nsmb.1686  0.335
2009 Wu S, Hu YC, Liu H, Shi Y. Loss of YY1 impacts the heterochromatic state and meiotic double-strand breaks during mouse spermatogenesis. Molecular and Cellular Biology. 29: 6245-56. PMID 19786570 DOI: 10.1128/Mcb.00679-09  0.383
2009 Lan F, Shi Y. Epigenetic regulation: methylation of histone and non-histone proteins. Science in China. Series C, Life Sciences. 52: 311-22. PMID 19381457 DOI: 10.1007/S11427-009-0054-Z  0.408
2009 Nottke A, Colaiácovo MP, Shi Y. Developmental roles of the histone lysine demethylases. Development (Cambridge, England). 136: 879-89. PMID 19234061 DOI: 10.1242/Dev.020966  0.387
2009 Chen S, Whetstine JR, Ghosh S, Hanover JA, Gali RR, Grosu P, Shi Y. The conserved NAD(H)-dependent corepressor CTBP-1 regulates Caenorhabditis elegans life span. Proceedings of the National Academy of Sciences of the United States of America. 106: 1496-501. PMID 19164523 DOI: 10.1073/Pnas.0802674106  0.361
2008 Mulligan P, Westbrook TF, Ottinger M, Pavlova N, Chang B, Macia E, Shi YJ, Barretina J, Liu J, Howley PM, Elledge SJ, Shi Y. CDYL Bridges REST and Histone Methyltransferases for Gene Repression and Suppression of Cellular Transformation Molecular Cell. 32: 718-726. PMID 19061646 DOI: 10.1016/J.Molcel.2008.10.025  0.371
2008 Li F, Huarte M, Zaratiegui M, Vaughn MW, Shi Y, Martienssen R, Cande WZ. Lid2 is required for coordinating H3K4 and H3K9 methylation of heterochromatin and euchromatin. Cell. 135: 272-83. PMID 18957202 DOI: 10.1016/J.Cell.2008.08.036  0.428
2008 Qi HH, Ongusaha PP, Myllyharju J, Cheng D, Pakkanen O, Shi Y, Lee SW, Peng J, Shi Y. Prolyl 4-hydroxylation regulates Argonaute 2 stability. Nature. 455: 421-4. PMID 18690212 DOI: 10.1038/Nature07186  0.338
2008 Tsai WW, Nguyen TT, Shi Y, Barton MC. p53-targeted LSD1 functions in repression of chromatin structure and transcription in vivo. Molecular and Cellular Biology. 28: 5139-46. PMID 18573881 DOI: 10.1128/Mcb.00287-08  0.342
2008 Lan F, Nottke AC, Shi Y. Mechanisms involved in the regulation of histone lysine demethylases. Current Opinion in Cell Biology. 20: 316-25. PMID 18440794 DOI: 10.1016/J.Ceb.2008.03.004  0.394
2007 Matthews AG, Kuo AJ, Ramón-Maiques S, Han S, Champagne KS, Ivanov D, Gallardo M, Carney D, Cheung P, Ciccone DN, Walter KL, Utz PJ, Shi Y, Kutateladze TG, Yang W, et al. RAG2 PHD finger couples histone H3 lysine 4 trimethylation with V(D)J recombination. Nature. 450: 1106-10. PMID 18033247 DOI: 10.1038/Nature06431  0.395
2007 Wu S, Shi Y, Mulligan P, Gay F, Landry J, Liu H, Lu J, Qi HH, Wang W, Nickoloff JA, Wu C, Shi Y. A YY1-INO80 complex regulates genomic stability through homologous recombination-based repair. Nature Structural & Molecular Biology. 14: 1165-72. PMID 18026119 DOI: 10.1038/Nsmb1332  0.345
2007 Shi Y. Histone lysine demethylases: Emerging roles in development, physiology and disease Nature Reviews Genetics. 8: 829-833. PMID 17909537 DOI: 10.1038/Nrg2218  0.398
2007 Lan F, Bayliss PE, Rinn JL, Whetstine JR, Wang JK, Chen S, Iwase S, Alpatov R, Issaeva I, Canaani E, Roberts TM, Chang HY, Shi Y. A histone H3 lysine 27 demethylase regulates animal posterior development. Nature. 449: 689-94. PMID 17851529 DOI: 10.1038/Nature06192  0.445
2007 Cai Y, Jin J, Yao T, Gottschalk AJ, Swanson SK, Wu S, Shi Y, Washburn MP, Florens L, Conaway RC, Conaway JW. YY1 functions with INO80 to activate transcription. Nature Structural & Molecular Biology. 14: 872-4. PMID 17721549 DOI: 10.1038/Nsmb1276  0.368
2007 Lan F, Collins RE, De Cegli R, Alpatov R, Horton JR, Shi X, Gozani O, Cheng X, Shi Y. Recognition of unmethylated histone H3 lysine 4 links BHC80 to LSD1-mediated gene repression. Nature. 448: 718-22. PMID 17687328 DOI: 10.1038/Nature06034  0.434
2007 Chen Z, Zang J, Kappler J, Hong X, Crawford F, Wang Q, Lan F, Jiang C, Whetstine J, Dai S, Hansen K, Shi Y, Zhang G. Structural basis of the recognition of a methylated histone tail by JMJD2A. Proceedings of the National Academy of Sciences of the United States of America. 104: 10818-23. PMID 17567753 DOI: 10.1073/Pnas.0704525104  0.349
2007 Huarte M, Lan F, Kim T, Vaughn MW, Zaratiegui M, Martienssen RA, Buratowski S, Shi Y. The fission yeast Jmj2 reverses histone H3 Lysine 4 trimethylation. The Journal of Biological Chemistry. 282: 21662-70. PMID 17550896 DOI: 10.1074/Jbc.M703897200  0.401
2007 Lan F, Zaratiegui M, Villén J, Vaughn MW, Verdel A, Huarte M, Shi Y, Gygi SP, Moazed D, Martienssen RA, Shi Y. S. pombe LSD1 homologs regulate heterochromatin propagation and euchromatic gene transcription. Molecular Cell. 26: 89-101. PMID 17434129 DOI: 10.1016/J.Molcel.2007.02.023  0.426
2007 Horwitz AA, Affar el B, Heine GF, Shi Y, Parvin JD. A mechanism for transcriptional repression dependent on the BRCA1 E3 ubiquitin ligase. Proceedings of the National Academy of Sciences of the United States of America. 104: 6614-9. PMID 17420471 DOI: 10.1073/Pnas.0610481104  0.375
2007 Iwase S, Lan F, Bayliss P, de la Torre-Ubieta L, Huarte M, Qi HH, Whetstine JR, Bonni A, Roberts TM, Shi Y. The X-linked mental retardation gene SMCX/JARID1C defines a family of histone H3 lysine 4 demethylases. Cell. 128: 1077-88. PMID 17320160 DOI: 10.1016/J.Cell.2007.02.017  0.399
2007 Shi Y, Whetstine JR. Dynamic regulation of histone lysine methylation by demethylases. Molecular Cell. 25: 1-14. PMID 17218267 DOI: 10.1016/J.Molcel.2006.12.010  0.4
2007 Shi Y. Taking Epigenetics Center Stage Cell. 128: 639-640. DOI: 10.1016/J.Cell.2007.02.011  0.419
2006 Luke MP, Sui G, Liu H, Shi Y. Yin Yang 1 physically interacts with Hoxa11 and represses Hoxa11-dependent transcription. The Journal of Biological Chemistry. 281: 33226-32. PMID 16963455 DOI: 10.1074/Jbc.M606584200  0.366
2006 Shi X, Hong T, Walter KL, Ewalt M, Michishita E, Hung T, Carney D, Peña P, Lan F, Kaadige MR, Lacoste N, Cayrou C, Davrazou F, Saha A, Cairns BR, ... ... Shi Y, et al. ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression. Nature. 442: 96-9. PMID 16728974 DOI: 10.1038/Nature04835  0.432
2006 Chen Z, Zang J, Whetstine J, Hong X, Davrazou F, Kutateladze TG, Simpson M, Mao Q, Pan CH, Dai S, Hagman J, Hansen K, Shi Y, Zhang G. Structural insights into histone demethylation by JMJD2 family members. Cell. 125: 691-702. PMID 16677698 DOI: 10.1016/J.Cell.2006.04.024  0.361
2006 Affar el B, Gay F, Shi Y, Liu H, Huarte M, Wu S, Collins T, Li E, Shi Y. Essential dosage-dependent functions of the transcription factor yin yang 1 in late embryonic development and cell cycle progression. Molecular and Cellular Biology. 26: 3565-81. PMID 16611997 DOI: 10.1128/Mcb.26.9.3565-3581.2006  0.385
2006 Whetstine JR, Nottke A, Lan F, Huarte M, Smolikov S, Chen Z, Spooner E, Li E, Zhang G, Colaiacovo M, Shi Y. Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases. Cell. 125: 467-81. PMID 16603238 DOI: 10.1016/J.Cell.2006.03.028  0.383
2006 Affar el B, Luke MP, Gay F, Calvo D, Sui G, Weiss RS, Li E, Shi Y. Targeted ablation of Par-4 reveals a cell type-specific susceptibility to apoptosis-inducing agents. Cancer Research. 66: 3456-62. PMID 16585168 DOI: 10.1158/0008-5472.Can-05-0964  0.317
2006 Rosendorff A, Sakakibara S, Lu S, Kieff E, Xuan Y, DiBacco A, Shi Y, Shi Y, Gill G. NXP-2 association with SUMO-2 depends on lysines required for transcriptional repression. Proceedings of the National Academy of Sciences of the United States of America. 103: 5308-13. PMID 16567619 DOI: 10.1073/Pnas.0601066103  0.398
2006 Bates EA, Victor M, Jones AK, Shi Y, Hart AC. Differential contributions of Caenorhabditis elegans histone deacetylases to huntingtin polyglutamine toxicity. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 2830-8. PMID 16525063 DOI: 10.1523/Jneurosci.3344-05.2006  0.355
2005 Shi YJ, Matson C, Lan F, Iwase S, Baba T, Shi Y. Regulation of LSD1 histone demethylase activity by its associated factors. Molecular Cell. 19: 857-64. PMID 16140033 DOI: 10.1016/J.Molcel.2005.08.027  0.417
2005 Baumeister P, Luo S, Skarnes WC, Sui G, Seto E, Shi Y, Lee AS. Endoplasmic reticulum stress induction of the Grp78/BiP promoter: activating mechanisms mediated by YY1 and its interactive chromatin modifiers. Molecular and Cellular Biology. 25: 4529-40. PMID 15899857 DOI: 10.1128/Mcb.25.11.4529-4540.2005  0.346
2005 Whetstine JR, Ceron J, Ladd B, Dufourcq P, Reinke V, Shi Y. Regulation of tissue-specific and extracellular matrix-related genes by a class I histone deacetylase. Molecular Cell. 18: 483-90. PMID 15893731 DOI: 10.1016/J.Molcel.2005.04.006  0.392
2004 Shi Y, Lan F, Matson C, Mulligan P, Whetstine JR, Cole PA, Casero RA, Shi Y. Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell. 119: 941-53. PMID 15620353 DOI: 10.1016/j.cell.2004.12.012  0.302
2004 Alpatov R, Munguba GC, Caton P, Joo JH, Shi Y, Shi Y, Hunt ME, Sugrue SP. Nuclear speckle-associated protein Pnn/DRS binds to the transcriptional corepressor CtBP and relieves CtBP-mediated repression of the E-cadherin gene. Molecular and Cellular Biology. 24: 10223-35. PMID 15542832 DOI: 10.1128/Mcb.24.23.10223-10235.2004  0.389
2004 Chen J, Wall NR, Kocher K, Duclos N, Fabbro D, Neuberg D, Griffin JD, Shi Y, Gilliland DG. Stable expression of small interfering RNA sensitizes TEL-PDGFβR to inhibition with imatinib or rapamycin Journal of Clinical Investigation. 113: 1784-1791. PMID 15199413 DOI: 10.1172/Jci20673  0.339
2004 Lo MC, Gay F, Odom R, Shi Y, Lin R. Phosphorylation by the beta-catenin/MAPK complex promotes 14-3-3-mediated nuclear export of TCF/POP-1 in signal-responsive cells in C. elegans. Cell. 117: 95-106. PMID 15066285 DOI: 10.1016/S0092-8674(04)00203-X  0.305
2004 Walker AK, Shi Y, Blackwell TK. An extensive requirement for transcription factor IID-specific TAF-1 in Caenorhabditis elegans embryonic transcription. The Journal of Biological Chemistry. 279: 15339-47. PMID 14726532 DOI: 10.1074/Jbc.M310731200  0.365
2003 Lin X, Liang YY, Sun B, Liang M, Shi Y, Brunicardi FC, Shi Y, Feng XH. Smad6 recruits transcription corepressor CtBP to repress bone morphogenetic protein-induced transcription. Molecular and Cellular Biology. 23: 9081-93. PMID 14645520 DOI: 10.1128/Mcb.23.24.9081-9093.2003  0.33
2003 Shi Y, Blackwell TK. A Two-Tiered Transcription Regulation Mechanism that Protects Germ Cell Identity Molecular Cell. 12: 1062-1064. PMID 14636565 DOI: 10.1016/S1097-2765(03)00447-7  0.405
2003 Wall NR, Shi Y. Small RNA: Can RNA interference be exploited for therapy? Lancet. 362: 1401-1403. PMID 14585643 DOI: 10.1016/S0140-6736(03)14637-5  0.353
2003 Ding H, Schwarz DS, Keene A, Affar el B, Fenton L, Xia X, Shi Y, Zamore PD, Xu Z. Selective silencing by RNAi of a dominant allele that causes amyotrophic lateral sclerosis. Aging Cell. 2: 209-17. PMID 12934714 DOI: 10.1046/J.1474-9728.2003.00054.X  0.329
2003 Xia XG, Zhou H, Ding H, Affar el B, Shi Y, Xu Z. An enhanced U6 promoter for synthesis of short hairpin RNA. Nucleic Acids Research. 31: e100. PMID 12930974 DOI: 10.1093/Nar/Gng098  0.349
2003 Shi Y, Sawada J, Sui G, Affar el B, Whetstine JR, Lan F, Ogawa H, Luke MP, Nakatani Y, Shi Y. Coordinated histone modifications mediated by a CtBP co-repressor complex. Nature. 422: 735-8. PMID 12700765 DOI: 10.1038/Nature01550  0.438
2003 Gay F, Calvo D, Lo MC, Ceron J, Maduro M, Lin R, Shi Y. Acetylation regulates subcellular localization of the Wnt signaling nuclear effector POP-1. Genes & Development. 17: 717-22. PMID 12651889 DOI: 10.1101/Gad.1042403  0.355
2003 Shi Y. Mammalian RNAi for the masses Trends in Genetics. 19: 9-12. PMID 12493242 DOI: 10.1016/S0168-9525(02)00005-7  0.358
2002 Gaudilliere B, Shi Y, Bonni A. RNA interference reveals a requirement for myocyte enhancer factor 2A in activity-dependent neuronal survival. The Journal of Biological Chemistry. 277: 46442-6. PMID 12235147 DOI: 10.1074/Jbc.M206653200  0.338
2002 Shim EY, Walker AK, Shi Y, Blackwell TK. CDK-9/cyclin T (P-TEFb) is required in two postinitiation pathways for transcription in the C. elegans embryo. Genes & Development. 16: 2135-46. PMID 12183367 DOI: 10.1101/Gad.999002  0.343
2002 Sui G, Soohoo C, Affar el B, Gay F, Shi Y, Forrester WC, Shi Y. A DNA vector-based RNAi technology to suppress gene expression in mammalian cells. Proceedings of the National Academy of Sciences of the United States of America. 99: 5515-20. PMID 11960009 DOI: 10.1073/Pnas.082117599  0.365
2002 Dufourcq P, Victor M, Gay F, Calvo D, Hodgkin J, Shi Y. Functional requirement for histone deacetylase 1 in Caenorhabditis elegans gonadogenesis. Molecular and Cellular Biology. 22: 3024-34. PMID 11940660 DOI: 10.1128/Mcb.22.9.3024-3034.2002  0.396
2002 Victor M, Bei Y, Gay F, Calvo D, Mello C, Shi Y. HAT activity is essential for CBP-1-dependent transcription and differentiation in Caenorhabditis elegans. Embo Reports. 3: 50-5. PMID 11751575 DOI: 10.1093/Embo-Reports/Kvf006  0.387
2001 Calvo D, Victor M, Gay F, Sui G, Luke MP, Dufourcq P, Wen G, Maduro M, Rothman J, Shi Y. A POP-1 repressor complex restricts inappropriate cell type-specific gene transcription during Caenorhabditis elegans embryogenesis. The Embo Journal. 20: 7197-208. PMID 11742996 DOI: 10.1093/Emboj/20.24.7197  0.419
2001 Walker AK, Rothman JH, Shi Y, Blackwell TK. Distinct requirements for C.elegans TAF(II)s in early embryonic transcription. The Embo Journal. 20: 5269-79. PMID 11566890 DOI: 10.1093/Emboj/20.18.5269  0.311
2001 Oei SL, Shi Y. Poly(ADP-ribosyl)ation of transcription factor Yin Yang 1 under conditions of DNA damage Biochemical and Biophysical Research Communications. 285: 27-31. PMID 11437367 DOI: 10.1006/Bbrc.2001.5115  0.347
2001 Oei SL, Shi Y. Transcription factor Yin Yang 1 stimulates poly(ADP-ribosyl)ation and DNA repair. Biochemical and Biophysical Research Communications. 284: 450-454. PMID 11394900 DOI: 10.1006/Bbrc.2001.4985  0.367
2001 See RH, Calvo D, Shi Y, Kawa H, Luke MP, Yuan Z, Shi Y. Stimulation of p300-mediated transcription by the kinase MEKK1. The Journal of Biological Chemistry. 276: 16310-7. PMID 11278389 DOI: 10.1074/Jbc.M008113200  0.31
2000 Coull JJ, Romerio F, Sun JM, Volker JL, Galvin KM, Davie JR, Shi Y, Hansen U, Margolis DM. The human factors YY1 and LSF repress the human immunodeficiency virus type 1 long terminal repeat via recruitment of histone deacetylase 1. Journal of Virology. 74: 6790-9. PMID 10888618 DOI: 10.1128/Jvi.74.15.6790-6799.2000  0.33
2000 Walker AK, See R, Batchelder C, Kophengnavong T, Gronniger JT, Shi Y, Blackwell TK. A conserved transcription motif suggesting functional parallels between Caenorhabditis elegans SKN-1 and Cap'n'Collar-related basic leucine zipper proteins. The Journal of Biological Chemistry. 275: 22166-71. PMID 10764775 DOI: 10.1074/Jbc.M001746200  0.33
1999 Yuan ZM, Huang Y, Ishiko T, Nakada S, Utsugisawa T, Shioya H, Utsugisawa Y, Shi Y, Weichselbaum R, Kufe D. Function for p300 and not CBP in the apoptotic response to DNA damage. Oncogene. 18: 5714-7. PMID 10523850 DOI: 10.1038/Sj.Onc.1202930  0.307
1999 Donohoe ME, Zhang X, McGinnis L, Biggers J, Li E, Shi Y. Targeted disruption of mouse Yin Yang 1 transcription factor results in peri-implantation lethality. Molecular and Cellular Biology. 19: 7237-7244. PMID 10490658 DOI: 10.1128/Mcb.19.10.7237  0.302
1998 See RH, Shi Y. Adenovirus E1B 19,000-molecular-weight protein activates c-Jun N-terminal kinase and c-Jun-mediated transcription. Molecular and Cellular Biology. 18: 4012-4022. PMID 9632786 DOI: 10.1128/Mcb.18.7.4012  0.317
1998 Johnstone RW, Wang J, Tommerup N, Vissing H, Roberts T, Shi Y. Ciao 1 is a novel WD40 protein that interacts with the tumor suppressor protein WT1. Journal of Biological Chemistry. 273: 10880-10887. PMID 9556563 DOI: 10.1074/Jbc.273.18.10880  0.347
1998 Shi Y, Mello C. A CBP/p300 homolog specifies multiple differentiation pathways in Caenorhabditis elegans Genes and Development. 12: 943-955. PMID 9531533 DOI: 10.1101/Gad.12.7.943  0.39
1998 Kawasaki H, Song J, Eckner R, Ugai H, Chiu R, Taira K, Shi Y, Jones N, Yokoyama KK. p300 and ATF-2 are components of the DRF complex, which regulates retinoic acid- and E1A-mediated transcription of the c-jun gene in F9 cells. Genes & Development. 12: 233-45. PMID 9436983 DOI: 10.1101/Gad.12.2.233  0.341
1997 Galvin KM, Shi Y. Multiple mechanisms of transcriptional repression by YY1 Molecular and Cellular Biology. 17: 3723-3732. PMID 9199306 DOI: 10.1128/Mcb.17.7.3723  0.373
1996 Johnstone RW, See RH, Sells SF, Wang J, Muthukkumar S, Englert C, Haber DA, Licht JD, Sugrue SP, Roberts T, Rangnekar VM, Shi Y. A novel repressor, par-4, modulates transcription and growth suppression functions of the Wilms' tumor suppressor WT1. Molecular and Cellular Biology. 16: 6945-56. PMID 8943350 DOI: 10.1128/Mcb.16.12.6945  0.353
1996 Lee JS, See RH, Deng T, Shi Y. Adenovirus E1A Downregulates Cjun- And Junb-Mediated Transcription By Targeting Their Coactivator P300 Molecular and Cellular Biology. 16: 4312-4326. PMID 8754832 DOI: 10.1128/Mcb.16.8.4312  0.34
1996 Lee J, Zhang X, Shi Y. Differential Interactions of the CREB/ATF Family of Transcription Factors with p300 and Adenovirus E1A Journal of Biological Chemistry. 271: 17666-17674. DOI: 10.1074/Jbc.271.30.17666  0.321
1995 Lee JS, Galvin KM, See RH, Eckner R, Livingston D, Moran E, Shi Y. Relief of YY1 transcriptional repression by adenovirus E1A is mediated by E1A-associated protein p300. Genes & Development. 9: 1188-98. PMID 7758944 DOI: 10.1101/Gad.9.10.1188  0.3
1995 Reddy JC, Morris JC, Wang J, English MA, Haber DA, Shi Y, Licht JD. WT1-mediated transcriptional activation is inhibited by dominant negative mutant proteins Journal of Biological Chemistry. 270: 10878-10884. PMID 7738027 DOI: 10.1074/Jbc.270.18.10878  0.335
1995 Lee J, See RH, Galvin KM, Wang J, Shi Y. Functional interactions between YY1 and adenovirus E1A. Nucleic Acids Research. 23: 925-931. PMID 7731805 DOI: 10.1093/Nar/23.6.925  0.306
1993 Riggs KJ, Saleque S, Wong KK, Merrell KT, Lee JS, Shi Y, Calame K. Yin-yang 1 activates the c-myc promoter Molecular and Cellular Biology. 13: 7487-7495. PMID 8246966 DOI: 10.1128/Mcb.13.12.7487  0.303
1992 Lee T, Shi Y, Schwartz RJ. Displacement of BrdUrd-induced YY1 by serum response factor activates skeletal alpha-actin transcription in embryonic myoblasts. Proceedings of the National Academy of Sciences of the United States of America. 89: 9814-9818. PMID 1409704 DOI: 10.1073/Pnas.89.20.9814  0.313
1991 Seto E, Shi Y, Shenk T. YY1 is an initiator sequence-binding protein that directs and activates transcription in vitro Nature. 354: 241-245. PMID 1720509 DOI: 10.1038/354241A0  0.344
1991 Shi Y, Seto E, Chang LS, Shenk T. Transcriptional repression by YY1, a human GLI-Krüppel-related protein, and relief of repression by adenovirus E1A protein Cell. 67: 377-388. PMID 1655281 DOI: 10.1016/0092-8674(91)90189-6  0.32
Low-probability matches (unlikely to be authored by this person)
1999 Kato Y, Shi Y, He X. Neuralization of the Xenopus embryo by inhibition of p300/ CREB-binding protein function. The Journal of Neuroscience. 19: 9364-9373. DOI: 10.1523/Jneurosci.19-21-09364.1999  0.299
2019 Wang J, Wang L, Diao J, Shi YG, Shi Y, Ma H, Shen H. Binding to mA RNA promotes YTHDF2-mediated phase separation. Protein & Cell. PMID 31642031 DOI: 10.1007/S13238-019-00660-2  0.299
1993 Lee JS, Galvin KM, Shi Y. Evidence for physical interaction between the zinc-finger transcription factors YY1 and Sp1 Proceedings of the National Academy of Sciences of the United States of America. 90: 6145-6149. PMID 8327494 DOI: 10.1073/Pnas.90.13.6145  0.298
1997 Li WW, Hsiung Y, Wong V, Galvin K, Zhou Y, Shi Y, Lee AS. Suppression of grp78 core promoter element-mediated stress induction by the dbpA and dbpB (YB-1) cold shock domain proteins Molecular and Cellular Biology. 17: 61-68. PMID 8972186 DOI: 10.1128/Mcb.17.1.61  0.298
2004 Shi Y. Metabolic enzymes and coenzymes in transcription - A direct link between metabolism and transcription? Trends in Genetics. 20: 445-452. PMID 15313554 DOI: 10.1016/J.Tig.2004.07.004  0.298
2013 Tan MK, Lim HJ, Bennett EJ, Shi Y, Harper JW. Parallel SCF adaptor capture proteomics reveals a role for SCFFBXL17 in NRF2 activation via BACH1 repressor turnover. Molecular Cell. 52: 9-24. PMID 24035498 DOI: 10.1016/J.Molcel.2013.08.018  0.296
2019 Ma H, Wang X, Cai J, Dai Q, Natchiar SK, Lv R, Chen K, Lu Z, Chen H, Shi YG, Lan F, Fan J, Klaholz BP, Pan T, Shi Y, et al. Publisher Correction: N-Methyladenosine methyltransferase ZCCHC4 mediates ribosomal RNA methylation. Nature Chemical Biology. PMID 30737498 DOI: 10.1038/S41589-019-0233-6  0.295
2008 Shim SY, Samuels BA, Wang J, Neumayer G, Belzil C, Ayala R, Shi Y, Shi Y, Tsai LH, Nguyen MD. Ndel1 controls the dynein-mediated transport of vimentin during neurite outgrowth. The Journal of Biological Chemistry. 283: 12232-40. PMID 18303022 DOI: 10.1074/Jbc.M710200200  0.294
2021 Stielow B, Zhou Y, Cao Y, Simon C, Pogoda HM, Jiang J, Ren Y, Phanor SK, Rohner I, Nist A, Stiewe T, Hammerschmidt M, Shi Y, Bulyk ML, Wang Z, et al. The SAM domain-containing protein 1 (SAMD1) acts as a repressive chromatin regulator at unmethylated CpG islands. Science Advances. 7. PMID 33980486 DOI: 10.1126/sciadv.abf2229  0.294
2004 Sui G, Affar EB, Shi Y, Brignone C, Wall NR, Yin P, Donohoe M, Luke MP, Calvo D, Grossman SR. Yin Yang 1 is a negative regulator of p53 Cell. 117: 859-872. PMID 15210108 DOI: 10.1016/J.Cell.2004.06.004  0.292
2007 Liu H, Schmidt-Supprian M, Shi Y, Hobeika E, Barteneva N, Jumaa H, Pelanda R, Reth M, Skok J, Rajewsky K. Yin Yang 1 is a critical regulator of B-cell development Genes and Development. 21: 1179-1189. PMID 17504937 DOI: 10.1101/Gad.1529307  0.292
1989 Shi Y, Son HJ, Shahan K, Rodriguez M, Costantini F, Derman E. Silent genes in the mouse major urinary protein gene family. Proceedings of the National Academy of Sciences of the United States of America. 86: 4584-8. PMID 2734309 DOI: 10.1073/Pnas.86.12.4584  0.292
2020 Qi J, Shi Y. Selective Targeting of Different Bromodomains by Small Molecules. Cancer Cell. 37: 764-766. PMID 32516588 DOI: 10.1016/J.Ccell.2020.05.016  0.291
1989 Chang LS, Shi Y, Shenk T. Adeno-associated virus P5 promoter contains an adenovirus E1A-inducible element and a binding site for the major late transcription factor Journal of Virology. 63: 3479-3488. PMID 2545917 DOI: 10.1128/Jvi.63.8.3479-3488.1989  0.289
1997 Sells SF, Han SS, Muthukkumar S, Maddiwar N, Johnstone R, Boghaert E, Gillis D, Liu G, Nair P, Monnig S, Collini P, Mattson MP, Sukhatme VP, Zimmer SG, Wood DP, ... ... Shi Y, et al. Expression and function of the leucine zipper protein Par-4 in apoptosis. Molecular and Cellular Biology. 17: 3823-32. PMID 9199316 DOI: 10.1128/Mcb.17.7.3823  0.288
1997 Gerritsen ME, Williams AJ, Neish AS, Moore S, Shi Y, Collins T. CREB-binding protein/p300 are transcriptional coactivators of p65. Proceedings of the National Academy of Sciences of the United States of America. 94: 2927-32. PMID 9096323 DOI: 10.1073/Pnas.94.7.2927  0.288
2011 Xu Y, Wu F, Tan L, Kong L, Xiong L, Deng J, Barbera AJ, Zheng L, Zhang H, Huang S, Min J, Nicholson T, Chen T, Xu G, Shi Y, ... ... Shi YG, et al. Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells. Molecular Cell. 42: 451-64. PMID 21514197 DOI: 10.1016/J.Molcel.2011.04.005  0.288
2009 Du J, Xu H, Wei N, Wakim B, Halligan B, Pritchard KA, Shi Y. Identification of proteins interacting with GTP cyclohydrolase I. Biochemical and Biophysical Research Communications. 385: 143-7. PMID 19442649 DOI: 10.1016/J.Bbrc.2009.05.026  0.287
2011 Wu C, So J, Davis-Dusenbery BN, Qi HH, Bloch DB, Shi Y, Lagna G, Hata A. Hypoxia potentiates microRNA-mediated gene silencing through posttranslational modification of Argonaute2. Molecular and Cellular Biology. 31: 4760-74. PMID 21969601 DOI: 10.1128/Mcb.05776-11  0.286
2013 Zhang H, Jing X, Shi Y, Xu H, Du J, Guan T, Weihrauch D, Jones DW, Wang W, Gourlay D, Oldham KT, Hillery CA, Pritchard KA. N-acetyl lysyltyrosylcysteine amide inhibits myeloperoxidase, a novel tripeptide inhibitor. Journal of Lipid Research. 54: 3016-29. PMID 23883583 DOI: 10.1194/Jlr.M038273  0.286
2012 Teng RJ, Du J, Welak S, Guan T, Eis A, Shi Y, Konduri GG. Cross talk between NADPH oxidase and autophagy in pulmonary artery endothelial cells with intrauterine persistent pulmonary hypertension American Journal of Physiology - Lung Cellular and Molecular Physiology. 302. PMID 22245997 DOI: 10.1152/Ajplung.00177.2011  0.286
2012 Du J, Teng RJ, Guan T, Eis A, Kaul S, Konduri GG, Shi Y. Role of autophagy in angiogenesis in aortic endothelial cells American Journal of Physiology - Cell Physiology. 302. PMID 22031599 DOI: 10.1152/Ajpcell.00164.2011  0.285
2018 Shen Q, Zhang Q, Shi Y, Shi Q, Jiang Y, Gu Y, Li Z, Li X, Zhao K, Wang C, Li N, Cao X. Tet2 promotes pathogen infection-induced myelopoiesis through mRNA oxidation. Nature. PMID 29364877 DOI: 10.1038/Nature25434  0.285
2000 Nasrin N, Ogg S, Cahill CM, Biggs W, Nui S, Dore J, Calvo D, Shi Y, Ruvkun G, Alexander-Bridges MC. DAF-16 recruits the CREB-binding protein coactivator complex to the insulin-like growth factor binding protein 1 promoter in HepG2 cells. Proceedings of the National Academy of Sciences of the United States of America. 97: 10412-7. PMID 10973497 DOI: 10.1073/Pnas.190326997  0.284
1991 Montalvo EA, Shi Y, Shenk TE, Levine AJ. Negative regulation of the BZLF1 promoter of Epstein-Barr virus. Journal of Virology. 65: 3647-55. PMID 1645787 DOI: 10.1128/Jvi.65.7.3647-3655.1991  0.284
2008 Westbrook TF, Hu G, Ang XL, Mulligan P, Pavlova NN, Liang A, Leng Y, Maehr R, Shi Y, Harper JW, Elledge SJ. SCFβ-TRCP controls oncogenic transformation and neural differentiation through REST degradation Nature. 452: 370-374. PMID 18354483 DOI: 10.1038/Nature06780  0.283
2016 Rizvi F, DeFranco A, Siddiqui R, Negmadjanov U, Emelyanova L, Holmuhamedov A, Ross G, Shi Y, Holmuhamedov EL, Kress DC, Tajik AJ, Jahangir A. Chamber-specific differences in human cardiac fibroblast proliferation and responsiveness toward simvastatin. American Journal of Physiology. Cell Physiology. ajpcell.00056.2016. PMID 27335167 DOI: 10.1152/Ajpcell.00056.2016  0.281
1999 Cook J, Krishnan S, Ananth S, Sells SF, Shi Y, Walther MM, Linehan WM, Sukhatme VP, Weinstein MH, Rangnekar VM. Decreased expression of the pro-apoptotic protein Par-4 in renal cell carcinoma. Oncogene. 18: 1205-8. PMID 10022126 DOI: 10.1038/Sj.Onc.1202416  0.281
2012 Blättler SM, Verdeguer F, Liesa M, Cunningham JT, Vogel RO, Chim H, Liu H, Romanino K, Shirihai OS, Vazquez F, Rüegg MA, Shi Y, Puigserver P. Defective mitochondrial morphology and bioenergetic function in mice lacking the transcription factor Yin Yang 1 in skeletal muscle. Molecular and Cellular Biology. 32: 3333-46. PMID 22711985 DOI: 10.1128/Mcb.00337-12  0.281
1996 Bauknecht T, See RH, Shi Y. A novel C/EBP beta-YY1 complex controls the cell-type-specific activity of the human papillomavirus type 18 upstream regulatory region. Journal of Virology. 70: 7695-705. PMID 8892890 DOI: 10.1128/Jvi.70.11.7695-7705.1996  0.278
2008 Ongusaha PP, Qi HH, Raj L, Kim YB, Aaronson SA, Davis RJ, Shi Y, Liao JK, Lee SW. Identification of ROCK1 as an upstream activator of the JIP-3 to JNK signaling axis in response to UVB damage. Science Signaling. 1: ra14. PMID 19036714 DOI: 10.1126/Scisignal.1161938  0.277
1987 Shahan K, Denaro M, Gilmartin M, Shi Y, Derman E. Expression of six mouse major urinary protein genes in the mammary, parotid, sublingual, submaxillary, and lachrymal glands and in the liver. Molecular and Cellular Biology. 7: 1947-54. PMID 3600653 DOI: 10.1128/Mcb.7.5.1947  0.277
2006 Nilakantan V, Zhou X, Hilton G, Shi Y, Baker JE, Khanna AK, Pieper GM. Antagonizing reactive oxygen by treatment with a manganese (III) metalloporphyrin-based superoxide dismutase mimetic in cardiac transplants Journal of Thoracic and Cardiovascular Surgery. 131: 898-906. PMID 16580450 DOI: 10.1016/J.Jtcvs.2005.11.015  0.275
2006 Lorente M, Pérez C, Sánchez C, Donohoe M, Shi Y, Vidal M. Homeotic transformations of the axial skeleton of YY1 mutant mice and genetic interaction with the Polycomb group gene Ring1/Ring1A. Mechanisms of Development. 123: 312-20. PMID 16624538 DOI: 10.1016/J.Mod.2006.02.003  0.275
2013 Medvedovic J, Ebert A, Tagoh H, Tamir IM, Schwickert TA, Novatchkova M, Sun Q, Huis In 't Veld PJ, Guo C, Yoon HS, Denizot Y, Holwerda SJ, de Laat W, Cogné M, Shi Y, et al. Flexible long-range loops in the VH gene region of the Igh locus facilitate the generation of a diverse antibody repertoire. Immunity. 39: 229-44. PMID 23973221 DOI: 10.1016/J.Immuni.2013.08.011  0.275
2005 Sui G, Shi Y. Gene silencing by a DNA vector-based RNAi technology. Methods in Molecular Biology (Clifton, N.J.). 309: 205-18. PMID 15990402 DOI: 10.1385/1-59259-935-4:205  0.273
1998 Bauknecht T, Shi Y. Overexpression of C/EBPbeta represses human papillomavirus type 18 upstream regulatory region activity in HeLa cells by interfering with the binding of TATA-binding protein. Journal of Virology. 72: 2113-24. PMID 9499067 DOI: 10.1128/Jvi.72.3.2113-2124.1998  0.272
2020 Panditharatna E, Dharia N, Li D, Beck A, Shaw M, Jiang L, Trissal M, Liu I, Lareau C, Anastas J, Quezada M, Hack O, Mire H, Jerome W, Kugener G, ... ... Shi Y, et al. EXTH-37. TARGETING EPIGENETIC VULNERABILITIES IDENTIFIED FROM A CRISPR SCREEN IN H3.3K27M DIPG Neuro-Oncology. 22: ii95-ii95. DOI: 10.1093/neuonc/noaa215.391  0.272
2000 Zhang M, Shi Y, Magit D, Furth PA, Sager R. Reduced mammary tumor progression in WAP-TAg/WAP-maspin bitransgenic mice. Oncogene. 19: 6053-8. PMID 11146557 DOI: 10.1038/Sj.Onc.1204006  0.271
1994 Mills LK, Shi Y, Millette RL. YY1 is the cellular factor shown previously to bind to regulatory regions of several leaky-late (beta gamma, gamma 1) genes of herpes simplex virus type 1. Journal of Virology. 68: 1234-1238. PMID 8289358 DOI: 10.1128/Jvi.68.2.1234-1238.1994  0.268
1995 Bauknecht T, Jundt F, Herr I, Oehler T, Delius H, Shi Y, Angel P, Zur Hausen H. A switch region determines the cell type-specific positive or negative action of YY1 on the activity of the human papillomavirus type 18 promoter. Journal of Virology. 69: 1-12. PMID 7983700 DOI: 10.1128/Jvi.69.1.1-12.1995  0.267
2008 Kim HG, Kurth I, Lan F, Meliciani I, Wenzel W, Eom SH, Kang GB, Rosenberger G, Tekin M, Ozata M, Bick DP, Sherins RJ, Walker SL, Shi Y, Gusella JF, et al. Mutations in CHD7, encoding a chromatin-remodeling protein, cause idiopathic hypogonadotropic hypogonadism and Kallmann syndrome. American Journal of Human Genetics. 83: 511-9. PMID 18834967 DOI: 10.1016/J.Ajhg.2008.09.005  0.267
2000 Shi Y, Pritchard KA, Holman P, Rafiee P, Griffith OW, Kalyanaraman B, Baker JE. Chronic myocardial hypoxia increases nitric oxide synthase and decreases caveolin-3. Free Radical Biology & Medicine. 29: 695-703. PMID 11053770 DOI: 10.1016/S0891-5849(00)00364-6  0.266
2017 Li X, Zhang Q, Shi Q, Liu Y, Zhao K, Shen Q, Shi Y, Liu X, Wang C, Li N, Ma Y, Cao X. Demethylase Kdm6a epigenetically promotes IL-6 and IFN-β production in macrophages. Journal of Autoimmunity. PMID 28284523 DOI: 10.1016/J.Jaut.2017.02.007  0.263
2024 Liu H, Zhou Y, Fredimoses M, Niu P, Ge Y, Wu R, Liu T, Li P, Shi Y, Shi Y, Liu K, Dong Z. Targeting leucine-rich PPR motif-containing protein/LRPPRC by 5,7,4'-trimethoxyflavone suppresses esophageal squamous cell carcinoma progression. International Journal of Biological Macromolecules. 131966. PMID 38697422 DOI: 10.1016/j.ijbiomac.2024.131966  0.262
1999 Yuan Z, Huang Y, Ishiko T, Nakada S, Utsugisawa T, Shioya H, Utsugisawa Y, Yokoyama K, Weichselbaum R, Shi Y, Kufe D. Role for p300 in stabilization of p53 in the response to DNA damage Journal of Biological Chemistry. 274: 1883-1886. PMID 9890940 DOI: 10.1074/Jbc.274.4.1883  0.261
2007 Xu H, Shi Y, Wang J, Jones D, Weilrauch D, Ying R, Wakim B, Pritchard KA. A heat shock protein 90 binding domain in endothelial nitric-oxide synthase influences enzyme function. The Journal of Biological Chemistry. 282: 37567-74. PMID 17971446 DOI: 10.1074/Jbc.M706464200  0.259
1995 Wang J, Auger KR, Jarvis L, Shi Y, Roberts TM. Direct association of Grb2 with the p85 subunit of phosphatidylinositol 3-kinase. The Journal of Biological Chemistry. 270: 12774-80. PMID 7759531 DOI: 10.1074/Jbc.270.21.12774  0.259
2005 Liu Y, Bubolz AH, Shi Y, Newman PJ, Newman DK, Gutterman DD. Peroxynitrite reduces the endothelium-derived hyperpolarizing factor component of coronary flow-mediated dilation in PECAM-1-knockout mice. American Journal of Physiology. Regulatory, Integrative and Comparative Physiology. 290: R57-65. PMID 16166207 DOI: 10.1152/Ajpregu.00424.2005  0.259
2004 Xiang R, Shi Y, Dillon DA, Negin B, Horváth C, Wilkins JA. 2D LC/MS analysis of membrane proteins from breast cancer cell lines MCF7 and BT474. Journal of Proteome Research. 3: 1278-83. PMID 15595738 DOI: 10.1021/Pr049852E  0.258
2013 Du J, Li Z, Li QZ, Guan T, Yang Q, Xu H, Pritchard KA, Camara AK, Shi Y. Enoyl coenzyme a hydratase domain-containing 2, a potential novel regulator of myocardial ischemia injury. Journal of the American Heart Association. 2: e000233. PMID 24108764 DOI: 10.1161/Jaha.113.000233  0.257
2013 Teng RJ, Du J, Afolayan AJ, Eis A, Shi Y, Konduri GG. AMP kinase activation improves angiogenesis in pulmonary artery endothelial cells with in utero pulmonary hypertension American Journal of Physiology - Lung Cellular and Molecular Physiology. 304. PMID 23103561 DOI: 10.1152/Ajplung.00200.2012  0.257
2005 Park SK, Nguyen MD, Fischer A, Luke MP, Affar el B, Dieffenbach PB, Tseng HC, Shi Y, Tsai LH. Par-4 links dopamine signaling and depression. Cell. 122: 275-87. PMID 16051151 DOI: 10.1016/J.Cell.2005.05.031  0.256
2007 Donohoe ME, Zhang LF, Xu N, Shi Y, Lee JT. Identification of a Ctcf cofactor, Yy1, for the X chromosome binary switch. Molecular Cell. 25: 43-56. PMID 17218270 DOI: 10.1016/J.Molcel.2006.11.017  0.256
2022 Qian X, Bao ZM, Yao D, Shi Y. Lysine demethylase 5C epigenetically reduces transcription of ITIH1 that results in augmented progression of liver hepatocellular carcinoma. The Kaohsiung Journal of Medical Sciences. PMID 35080113 DOI: 10.1002/kjm2.12501  0.256
2012 Blättler SM, Cunningham JT, Verdeguer F, Chim H, Haas W, Liu H, Romanino K, Rüegg MA, Gygi SP, Shi Y, Puigserver P. Yin Yang 1 deficiency in skeletal muscle protects against rapamycin-induced diabetic-like symptoms through activation of insulin/IGF signaling. Cell Metabolism. 15: 505-17. PMID 22482732 DOI: 10.1016/J.Cmet.2012.03.008  0.255
1989 Shi Y, Rodriguez M, Shahan K, Derman E. Subfamily of submaxillary gland-specific Mup genes: chromosomal linkage and sequence comparison with liver-specific Mup genes. Nucleic Acids Research. 17: 6191-203. PMID 2771644 DOI: 10.1093/Nar/17.15.6191  0.255
2009 Du J, Wei N, Guan T, Xu H, An J, Pritchard KA, Shi Y. Inhibition of CDKS by roscovitine suppressed LPS-induced *NO production through inhibiting NFkappaB activation and BH4 biosynthesis in macrophages. American Journal of Physiology. Cell Physiology. 297: C742-9. PMID 19553566 DOI: 10.1152/Ajpcell.00138.2009  0.253
2011 Teng RJ, Du J, Xu H, Bakhutashvili I, Eis A, Shi Y, Pritchard KA, Konduri GG. Sepiapterin improves angiogenesis of pulmonary artery endothelial cells with in utero pulmonary hypertension by recoupling endothelial nitric oxide synthase American Journal of Physiology - Lung Cellular and Molecular Physiology. 301. PMID 21622842 DOI: 10.1152/Ajplung.00316.2010  0.253
2002 Shi Y, Baker JE, Zhang C, Tweddell JS, Su J, Pritchard KA. Chronic hypoxia increases endothelial nitric oxide synthase generation of nitric oxide by increasing heat shock protein 90 association and serine phosphorylation. Circulation Research. 91: 300-6. PMID 12193462 DOI: 10.1161/01.Res.0000031799.12850.1E  0.252
2005 Rafiee P, Shi Y, Su J, Pritchard KA, Tweddell JS, Baker JE. Erythropoietin protects the infant heart against ischemia-reperfusion injury by triggering multiple signaling pathways Basic Research in Cardiology. 100: 187-197. PMID 15611843 DOI: 10.1007/S00395-004-0508-1  0.25
2003 Konduri GG, Ou J, Shi Y, Pritchard KA. Decreased association of HSP90 impairs endothelial nitric oxide synthase in fetal lambs with persistent pulmonary hypertension. American Journal of Physiology. Heart and Circulatory Physiology. 285: H204-11. PMID 12663260 DOI: 10.1152/Ajpheart.00837.2002  0.249
2006 Densmore JC, Signorino PR, Ou J, Hatoum OA, Rowe JJ, Shi Y, Kaul S, Jones DW, Sabina RE, Pritchard KA, Guice KS, Oldham KT. Endothelium-derived microparticles induce endothelial dysfunction and acute lung injury. Shock (Augusta, Ga.). 26: 464-71. PMID 17047516 DOI: 10.1097/01.Shk.0000228791.10550.36  0.248
2007 Allis CD, Berger SL, Cote J, Dent S, Jenuwien T, Kouzarides T, Pillus L, Reinberg D, Shi Y, Shiekhattar R, Shilatifard A, Workman J, Zhang Y. New nomenclature for chromatin-modifying enzymes. Cell. 131: 633-6. PMID 18022353 DOI: 10.1016/J.Cell.2007.10.039  0.248
2007 Brooks CL, Li M, Hu M, Shi Y, Gu W. The p53--Mdm2--HAUSP complex is involved in p53 stabilization by HAUSP. Oncogene. 26: 7262-6. PMID 17525743 DOI: 10.1038/Sj.Onc.1210531  0.248
2008 Baker JE, Su J, Hsu A, Shi Y, Zhao M, Strande JL, Fu X, Xu H, Eis A, Komorowski R, Jensen ES, Tweddell JS, Rafiee P, Gross GJ. Human thrombopoietin reduces myocardial infarct size, apoptosis, and stunning following ischaemia/reperfusion in rats Cardiovascular Research. 77: 44-53. PMID 18006466 DOI: 10.1093/Cvr/Cvm026  0.248
2014 Yao M, Wang L, Shi Y, Qian Q, Yu D, Shi Y, Lu S, Yao D. [Intervention of glypican-3 genetic transcription on anti-proliferative effect of hepatoma cells with high metastatic potentiality]. Zhonghua Yi Xue Za Zhi. 94: 2544-8. PMID 25410930  0.247
2007 He Y, Dupree J, Wang J, Sandoval J, Li J, Liu H, Shi Y, Nave KA, Casaccia-Bonnefil P. The transcription factor Yin Yang 1 is essential for oligodendrocyte progenitor differentiation. Neuron. 55: 217-30. PMID 17640524 DOI: 10.1016/J.Neuron.2007.06.029  0.245
2013 Badeaux AI, Shi Y. Emerging roles for chromatin as a signal integration and storage platform. Nature Reviews. Molecular Cell Biology. 14: 211-24. PMID 23847782  0.244
2021 Shi Y, Xiang Z, Yang H, Khan S, Li R, Zhou S, Ullah S, Zhang J, Liu B. Pharmacological targeting of TNS3 with histone deacetylase inhibitor as a therapeutic strategy in esophageal squamous cell carcinoma. Aging. 13. PMID 34047714 DOI: 10.18632/aging.203091  0.244
2008 Vásquez-Vivar J, Whitsett J, Ionova I, Konorev E, Zielonka J, Kalyanaraman B, Shi Y, Pieper GM. Cytokines and lipopolysaccharides induce inducible nitric oxide synthase but not enzyme activity in adult rat cardiomyocytes Free Radical Biology and Medicine. 45: 994-1001. PMID 18634867 DOI: 10.1016/J.Freeradbiomed.2008.06.017  0.244
2013 Zhang H, Xu H, Weihrauch D, Jones DW, Jing X, Shi Y, Gourlay D, Oldham KT, Hillery CA, Pritchard KA. Inhibition of myeloperoxidase decreases vascular oxidative stress and increases vasodilatation in sickle cell disease mice. Journal of Lipid Research. 54: 3009-15. PMID 23956444 DOI: 10.1194/Jlr.M038281  0.242
2004 Pritchard KA, Ou J, Ou Z, Shi Y, Franciosi JP, Signorino P, Kaul S, Ackland-Berglund C, Witte K, Holzhauer S, Mohandas N, Guice KS, Oldham KT, Hillery CA. Hypoxia-induced acute lung injury in murine models of sickle cell disease. American Journal of Physiology. Lung Cellular and Molecular Physiology. 286: L705-14. PMID 12972407 DOI: 10.1152/Ajplung.00288.2002  0.241
2003 Rafiee P, Shi Y, Pritchard KA, Ogawa H, Eis AL, Komorowski RA, Fitzpatrick CM, Tweddell JS, Litwin SB, Mussatto K, Jaquiss RD, Baker JE. Cellular redistribution of inducible Hsp70 protein in the human and rabbit heart in response to the stress of chronic hypoxia: role of protein kinases,. The Journal of Biological Chemistry. 278: 43636-44. PMID 12937165 DOI: 10.1074/Jbc.M212993200  0.239
2018 Peng F, Shi X, Meng Y, Dong B, Xu G, Hou T, Shi Y, Liu T. Long non-coding RNA HOTTIP is upregulated in renal cell carcinoma and regulates cell growth and apoptosis by epigenetically silencing of LATS2. Biomedicine & Pharmacotherapy = Biomedecine & Pharmacotherapie. 105: 1133-1140. PMID 30021349 DOI: 10.1016/j.biopha.2018.06.081  0.239
2018 Zhao B, Xu W, Rong B, Chen G, Ye X, Dai R, Li W, Chen J, Cai J, Song L, Luo ZQ, Zeng R, Shi Y, Han JJ, Lan F. H3K14me3 genomic distributions and its regulation by KDM4 family demethylases. Cell Research. PMID 30337684 DOI: 10.1038/S41422-018-0095-6  0.239
2019 Li Y, Chen L, Guo F, Cao Y, Hu W, Shi Y, Lin X, Hou J, Li L, Ding X, Guo Y. Effects of epigallocatechin-3-gallate on the HMGB1/RAGE pathway in PM-exposed asthmatic rats. Biochemical and Biophysical Research Communications. PMID 31003767 DOI: 10.1016/J.Bbrc.2019.03.165  0.238
2013 Leucker TM, Ge ZD, Procknow J, Liu Y, Shi Y, Bienengraeber M, Warltier DC, Kersten JR. Impairment of endothelial-myocardial interaction increases the susceptibility of cardiomyocytes to ischemia/reperfusion injury. Plos One. 8: e70088. PMID 23894596 DOI: 10.1371/Journal.Pone.0070088  0.238
2010 Rujirabanjerd S, Nelson J, Tarpey PS, Hackett A, Edkins S, Raymond FL, Schwartz CE, Turner G, Iwase S, Shi Y, Futreal PA, Stratton MR, Gecz J. Identification and characterization of two novel JARID1C mutations: suggestion of an emerging genotype-phenotype correlation. European Journal of Human Genetics : Ejhg. 18: 330-5. PMID 19826449 DOI: 10.1038/Ejhg.2009.175  0.238
2018 Spadafora R, Lu J, Khetani RS, Zhang C, Iberg A, Li H, Shi Y, Lerou P. Lung Resident Mesenchymal Stromal Cells Reveal Transcriptional Dynamics of Lung Development in Preterm Infants. American Journal of Respiratory and Critical Care Medicine. PMID 29757681 DOI: 10.1164/Rccm.201801-0024Le  0.238
2009 Puntel M, Barrett RJ, Mondkar S, Saxena V, Kroeger KM, Muhammad AK, Liu C, Bondale N, Sciascia S, Xiong W, Shi Y, Salem A, Zadmehr A, Huynh P, Palmer D, et al. Herpes simplex virus type 1 thymidine kinase sequence fused to the lacz gene increases levels of {beta}-galactosidase activity per genome of high-capacity but not first-generation adenoviral vectors in vitro and in vivo. Journal of Virology. 83: 2004-10. PMID 19073729 DOI: 10.1128/Jvi.01298-08  0.237
2006 Jiang MT, Ljubkovic M, Nakae Y, Shi Y, Kwok WM, Stowe DF, Bosnjak ZJ. Characterization of human cardiac mitochondrial ATP-sensitive potassium channel and its regulation by phorbol ester in vitro. American Journal of Physiology. Heart and Circulatory Physiology. 290: H1770-6. PMID 16361367 DOI: 10.1152/Ajpheart.01084.2005  0.236
2012 Klionsky DJ, Abdalla FC, Abeliovich H, Abraham RT, Acevedo-Arozena A, Adeli K, Agholme L, Agnello M, Agostinis P, Aguirre-Ghiso JA, Ahn HJ, Ait-Mohamed O, Ait-Si-Ali S, Akematsu T, Akira S, ... ... Shi Y, et al. Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy. 8: 445-544. PMID 22966490 DOI: 10.4161/Auto.19496  0.236
2001 Pritchard KA, Ackerman AW, Gross ER, Stepp DW, Shi Y, Fontana JT, Baker JE, Sessa WC. Heat shock protein 90 mediates the balance of nitric oxide and superoxide anion from endothelial nitric-oxide synthase. The Journal of Biological Chemistry. 276: 17621-4. PMID 11278264 DOI: 10.1074/Jbc.C100084200  0.235
2005 Shi Y, Hutchins WC, Su J, Siker D, Hogg N, Pritchard KA, Keszler A, Tweddell JS, Baker JE. Delayed cardioprotection with isoflurane: role of reactive oxygen and nitrogen. American Journal of Physiology. Heart and Circulatory Physiology. 288: H175-84. PMID 15388508 DOI: 10.1152/Ajpheart.00494.2004  0.234
2000 Sze JY, Victor M, Loer C, Shi Y, Ruvkun G. Food and metabolic signalling defects in a Caenorhabditis elegans serotonin-synthesis mutant. Nature. 403: 560-4. PMID 10676966 DOI: 10.1038/35000609  0.234
2018 Jin Y, Dong H, Shi Y, Bian L. Mutually exclusive alternative splicing of pre-mRNAs. Wiley Interdisciplinary Reviews. Rna. PMID 29423937 DOI: 10.1002/wrna.1468  0.234
2015 Yue Y, Yang Y, Dai L, Cao G, Chen R, Hong W, Liu B, Shi Y, Meng Y, Shi F, Xiao M, Jin Y. Long-range RNA pairings contribute to mutually exclusive splicing. Rna (New York, N.Y.). PMID 26554032 DOI: 10.1261/rna.053314.115  0.234
2017 Liu Y, Baumgardt SL, Fang J, Shi Y, Qiao S, Bosnjak ZJ, Vásquez-Vivar J, Xia Z, Warltier DC, Kersten JR, Ge ZD. Transgenic overexpression of GTP cyclohydrolase 1 in cardiomyocytes ameliorates post-infarction cardiac remodeling. Scientific Reports. 7: 3093. PMID 28596578 DOI: 10.1038/S41598-017-03234-6  0.233
2004 Shi Y, Rafiee P, Su J, Pritchard KA, Tweddell JS, Baker JE. Acute cardioprotective effects of erythropoietin in infant rabbits are mediated by activation of protein kinases and potassium channels Basic Research in Cardiology. 99: 173-182. PMID 27519302 DOI: 10.1007/S00395-004-0464-9  0.233
2016 Jawa Z, Perez RM, Garlie L, Singh M, Qamar R, Khandheria BK, Jahangir A, Shi Y. Risk factors of trastuzumab-induced cardiotoxicity in breast cancer: A meta-analysis. Medicine. 95: e5195. PMID 27858859 DOI: 10.1097/Md.0000000000005195  0.232
2013 Greer EL, Shi Y. What's the Mtrr with your grandparents? Cell Metabolism. 18: 457-9. PMID 24093670 DOI: 10.1016/J.Cmet.2013.09.016  0.232
2012 An J, Du J, Wei N, Guan T, Camara AK, Shi Y. Differential sensitivity to LPS-induced myocardial dysfunction in the isolated brown Norway and Dahl S rat hearts: roles of mitochondrial function, NF-κB activation, and TNF-α production. Shock (Augusta, Ga.). 37: 325-32. PMID 22089203 DOI: 10.1097/Shk.0B013E31823F146F  0.231
2010 Amour J, Brzezinska AK, Jager Z, Sullivan C, Weihrauch D, Du J, Vladic N, Shi Y, Warltier DC, Pratt PF, Kersten JR. Hyperglycemia adversely modulates endothelial nitric oxide synthase during anesthetic preconditioning through tetrahydrobiopterin- and heat shock protein 90-mediated mechanisms. Anesthesiology. 112: 576-85. PMID 20124983 DOI: 10.1097/Aln.0B013E3181Cded1F  0.231
2005 Pritchard KA, Shi Y, Konduri GG. Tetrahydrobiopterin in pulmonary hypertension: pulmonary hypertension in guanosine triphosphate-cyclohydrolase-deficient mice. Circulation. 111: 2022-4. PMID 15851611 DOI: 10.1161/01.Cir.0000164391.72968.84  0.231
2009 An J, Du J, Wei N, Xu H, Pritchard KA, Shi Y. Role of tetrahydrobiopterin in resistance to myocardial ischemia in Brown Norway and Dahl S rats. American Journal of Physiology. Heart and Circulatory Physiology. 297: H1783-91. PMID 19717731 DOI: 10.1152/Ajpheart.00364.2009  0.23
2016 Emelyanova L, Ashary Z, Cosic M, Negmadjanov U, Ross G, Rizvi F, Olet S, Kress DC, Sra J, Tajik AJ, Holmuhamedov EL, Shi Y, Jahangir A. Selective downregulation of mitochondrial electron transport chain activity and increased oxidative stress in human atrial fibrillation. American Journal of Physiology. Heart and Circulatory Physiology. ajpheart.00699.2015. PMID 27199126 DOI: 10.1152/Ajpheart.00699.2015  0.229
2010 Wang W, Xu H, Shi Y, Nandedkar S, Zhang H, Gao H, Feroah T, Weihrauch D, Schulte ML, Jones DW, Jarzembowski J, Sorci-Thomas M, Pritchard KA. Genetic deletion of apolipoprotein A-I increases airway hyperresponsiveness, inflammation, and collagen deposition in the lung. Journal of Lipid Research. 51: 2560-70. PMID 20498409 DOI: 10.1194/Jlr.M004549  0.228
2011 Vladic N, Ge ZD, Leucker T, Brzezinska AK, Du JH, Shi Y, Warltier DC, Pratt PF, Kersten JR. Decreased tetrahydrobiopterin and disrupted association of Hsp90 with eNOS by hyperglycemia impair myocardial ischemic preconditioning. American Journal of Physiology. Heart and Circulatory Physiology. 301: H2130-9. PMID 21908789 DOI: 10.1152/Ajpheart.01078.2010  0.226
1999 Johnstone RW, Tommerup N, Hansen C, Vissing H, Shi Y. Structural organization, tissue expression, and chromosomal localization of Ciao 1, a functional modulator of the Wilms' tumor suppressor, WT1 Immunogenetics. 49: 900-905. DOI: 10.1007/S002510050571  0.226
2019 Chen H, Yu D, Fang R, Rabidou K, Wu D, Hu D, Jia P, Zhao Z, Wu Z, Peng J, Shi Y, Shi YG. TET2 stabilization by 14-3-3 binding to the phosphorylated Serine 99 is deregulated by mutations in cancer. Cell Research. PMID 30607016 DOI: 10.1038/S41422-018-0132-5  0.226
2018 Zhao B, Xu W, Rong B, Chen G, Ye X, Dai R, Li W, Chen J, Cai J, Song L, Luo ZQ, Zeng R, Shi Y, Han JJ, Lan F. Author Correction: H3K14me3 genomic distributions and its regulation by KDM4 family demethylases. Cell Research. PMID 30559438 DOI: 10.1038/S41422-018-0118-3  0.225
2000 Shi Y. Structural basis of Smad2 recognition by the smad anchor for receptor activation Science. 287: 92-97. PMID 10615055 DOI: 10.1126/Science.287.5450.92  0.225
2007 Weihrauch D, Xu H, Shi Y, Wang J, Brien J, Jones DW, Kaul S, Komorowski RA, Csuka ME, Oldham KT, Pritchard KA. Effects of D-4F on vasodilation, oxidative stress, angiostatin, myocardial inflammation, and angiogenic potential in tight-skin mice. American Journal of Physiology. Heart and Circulatory Physiology. 293: H1432-41. PMID 17496220 DOI: 10.1152/Ajpheart.00038.2007  0.224
2016 Wu HE, Baumgardt SL, Fang J, Paterson M, Liu Y, Du J, Shi Y, Qiao S, Bosnjak ZJ, Warltier DC, Kersten JR, Ge ZD. Cardiomyocyte GTP Cyclohydrolase 1 Protects the Heart Against Diabetic Cardiomyopathy. Scientific Reports. 6: 27925. PMID 27295516 DOI: 10.1038/Srep27925  0.223
2004 Shi Y, Xiang R, Horváth C, Wilkins JA. The role of liquid chromatography in proteomics. Journal of Chromatography. A. 1053: 27-36. PMID 15543969 DOI: 10.1016/J.Chroma.2004.07.044  0.223
2016 Negmadjanov U, Holmuhamedov A, Emelyanova L, Xu H, Rizvi F, Ross GR, Tajik AJ, Shi Y, Holmuhamedov E, Jahangir A. TGF-β1 Increases Resistance of NIH/3T3 Fibroblasts Toward Apoptosis Through Activation of Smad2/3 and Erk1/2 Pathways Journal of Patient-Centered Research and Reviews. 3: 187-198. DOI: 10.17294/2330-0698.1407  0.223
2005 Fitzpatrick CM, Shi Y, Hutchins WC, Su J, Gross GJ, Ostadal B, Tweddell JS, Baker JE. Cardioprotection in chronically hypoxic rabbits persists on exposure to normoxia: role of NOS and KATP channels. American Journal of Physiology. Heart and Circulatory Physiology. 288: H62-8. PMID 15319200 DOI: 10.1152/Ajpheart.00701.2004  0.222
2017 Jing X, Huang YW, Jarzembowski J, Shi Y, Konduri GG, Teng RJ. Caffeine ameliorates hyperoxia-induced lung injury by protecting GCH1 function in neonatal rat pups. Pediatric Research. PMID 28399119 DOI: 10.1038/Pr.2017.89  0.221
2019 Xu B, Shi Y, Wu Y, Meng Y, Jin Y. Role of RNA secondary structures in regulating Dscam alternative splicing. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. PMID 31048027 DOI: 10.1016/j.bbagrm.2019.04.008  0.221
2022 Luo Q, Mo J, Chen H, Hu Z, Wang B, Wu J, Liang Z, Xie W, Du K, Peng M, Li Y, Li T, Zhang Y, Shi X, Shen WH, ... Shi Y, et al. Structural insights into molecular mechanism for N-adenosine methylation by MT-A70 family methyltransferase METTL4. Nature Communications. 13: 5636. PMID 36163360 DOI: 10.1038/s41467-022-33277-x  0.22
2002 Shi Y, Baker JE, Zhang C, Tweddell JS, Su J, Pritchard KA. 12 Chronic hypoxia increases NOS3 activity by association with HSP90 and serine phosphorylation Journal of Molecular and Cellular Cardiology. 34. DOI: 10.1016/S0022-2828(02)90160-4  0.22
2012 Rujirabanjerd S, Nelson J, Tarpey PS, Hackett A, Edkins S, Raymond FL, Schwartz CE, Turner G, Iwase S, Shi Y, Futreal PA, Stratton MR, Gecz J. Erratum: Identification and characterization of two novel JARID1C mutations: suggestion of an emerging genotype-phenotype correlation European Journal of Human Genetics. 20: 1010-1010. DOI: 10.1038/Ejhg.2012.114  0.219
2010 Nandedkar SD, Weihrauch D, Xu H, Shi Y, Feroah T, Hutchins W, Rickaby DA, Duzgunes N, Hillery CA, Konduri KS, Pritchard KA. D-4F, an apoA-1 mimetic, decreases airway hyperresponsiveness, inflammation, and oxidative stress in a murine model of asthma. Journal of Lipid Research. 52: 499-508. PMID 21131532 DOI: 10.1194/Jlr.M012724  0.219
2010 Du J, An J, Wei N, Guan T, Pritchard KA, Shi Y. Increased resistance to LPS-induced myocardial dysfunction in the Brown Norway rats versus Dahl S rats: roles of inflammatory cytokines and nuclear factor kappaB pathway. Shock (Augusta, Ga.). 33: 332-6. PMID 20160611 DOI: 10.1097/Shk.0B013E3181B7819E  0.218
2005 Shi Y, Hutchins W, Ogawa H, Chang CC, Pritchard KA, Zhang C, Khampang P, Lazar J, Jacob HJ, Rafiee P, Baker JE. Increased resistance to myocardial ischemia in the Brown Norway vs. Dahl S rat: Role of nitric oxide synthase and Hsp90 Journal of Molecular and Cellular Cardiology. 38: 625-635. PMID 15808839 DOI: 10.1016/J.Yjmcc.2005.02.005  0.218
2003 Mayo MW, Denlinger CE, Broad RM, Yeung F, Reilly ET, Shi Y, Jones DR. Ineffectiveness of histone deacetylase inhibitors to induce apoptosis involves the transcriptional activation of NF-kappa B through the Akt pathway. The Journal of Biological Chemistry. 278: 18980-9. PMID 12649266 DOI: 10.1074/Jbc.M211695200  0.217
2006 Cabigas BP, Su J, Hutchins W, Shi Y, Schaefer RB, Recinos RF, Nilakantan V, Kindwall E, Niezgoda JA, Baker JE. Hyperoxic and hyperbaric-induced cardioprotection: role of nitric oxide synthase 3. Cardiovascular Research. 72: 143-51. PMID 16930572 DOI: 10.1016/J.Cardiores.2006.06.031  0.217
2005 Shi Y, Xiang R, Horváth C, Wilkins JA. Quantitative analysis of membrane proteins from breast cancer cell lines BT474 and MCF7 using multistep solid phase mass tagging and 2D LC/MS. Journal of Proteome Research. 4: 1427-33. PMID 16083296 DOI: 10.1021/Pr050100+  0.217
2007 Ljubkovic M, Shi Y, Cheng Q, Bosnjak Z, Jiang MT. Cardiac mitochondrial ATP-sensitive potassium channel is activated by nitric oxide in vitro. Febs Letters. 581: 4255-9. PMID 17714708 DOI: 10.1016/J.Febslet.2007.07.071  0.215
2014 Liu Z, Li F, Zhang J, Mei Y, Wu J, Shi Y. Crystal Structure of the second extended PHD domain of human PHF6 protein Journal of Biological Chemistry. DOI: 10.2210/Pdb4Nn2/Pdb  0.211
2002 Rafiee P, Shi Y, Kong X, Pritchard KA, Tweddell JS, Litwin SB, Mussatto K, Jaquiss RD, Su J, Baker JE. Activation of protein kinases in chronically hypoxic infant human and rabbit hearts: role in cardioprotection. Circulation. 106: 239-45. PMID 12105165 DOI: 10.1161/01.Cir.0000022018.68965.6D  0.211
2009 Whitehouse JS, Kaul S, Shi Y, Pritchard KA, Oldham KT, Gourlay DM. Intermittent hypoxia and lipopolysaccharide inhibit nitric oxide production in the intestinal microvascular endothelium Journal of the American College of Surgeons. 209: S69-S70. DOI: 10.1016/J.Jamcollsurg.2009.06.168  0.21
2023 Mu M, Li X, Dong L, Wang J, Cai Q, Hu Y, Wang D, Zhao P, Zhang L, Zhang D, Cheng S, Tan L, Wu F, Shi YG, Xu W, ... Shi Y, et al. METTL14 regulates chromatin bivalent domains in mouse embryonic stem cells. Cell Reports. 42: 113116. PMID 37676772 DOI: 10.1016/j.celrep.2023.113116  0.21
2018 Pan H, Shi Y, Chen S, Yang Y, Yue Y, Zhan L, Dai L, Dong H, Hong W, Shi F, Jin Y. Competing RNA pairings in complex alternative splicing of a 3' variable region. Rna (New York, N.Y.). PMID 30065023 DOI: 10.1261/rna.066225.118  0.21
2010 Whitehouse JS, Xu H, Shi Y, Noll L, Kaul S, Jones DW, Pritchard KA, Oldham KT, Gourlay DM. Mesenteric nitric oxide and superoxide production in experimental necrotizing enterocolitis. The Journal of Surgical Research. 161: 1-8. PMID 19922948 DOI: 10.1016/J.Jss.2009.07.028  0.209
2014 Liu L, Shi Y, Liu C, Wang T, Liu G, Zhang G. Insight into the amplification by methylated urea of the anion specificity of macromolecules. Soft Matter. 10: 2856-62. PMID 24667999 DOI: 10.1039/c3sm52778f  0.207
1998 Johnstone RW, Tommerup N, Hansen C, Vissing H, Shi Y. Mapping of the human PAWR (par-4) gene to chromosome 12q21. Genomics. 53: 241-243. PMID 9790775 DOI: 10.1006/Geno.1998.5494  0.204
2019 Thohan V, Shi Y, Rappelt M, Yousefzai R, Sulemanjee NZ, Hastings TE, Cheema OM, Downey F, Crouch JD. The association between novel clinical factors and gastrointestinal bleeding among patients supported with continuous-flow left ventricular assist device therapy. Journal of Cardiac Surgery. PMID 31058372 DOI: 10.1111/Jocs.14062  0.203
2015 Jawa ZA, Perez RM, Garlie L, Singh M, Qamar R, Khandheria BK, Jahangir A, Shi Y. A Meta-Analysis of Incidence and Risk Factors of Trastuzumab-Induced Cardiotoxicity in Breast Cancer Journal of Patient-Centered Research and Reviews. 2: 207-208. DOI: 10.17294/2330-0698.1229  0.203
2023 Liu Y, Shi Y, Yu L, Wu Z, Jiang JH. Reversible Acylation of RNA Enables Activatable Biosensing. Analytical Chemistry. PMID 37053522 DOI: 10.1021/acs.analchem.3c00723  0.203
2016 Ghojallu S, Rappelt M, Chen H, Perez R, Garlie L, Riddell G, Gu Y, Zhang J, Qamar R, Khandheria BK, Jahangir A, Shi Y. Determining the Incidence and Factors of Cardiotoxicity in Breast Cancer Patients Treated With Anthracycline and/or Trastuzumab-Containing Regimen at Aurora Health Care Journal of Patient-Centered Research and Reviews. 3: 244. DOI: 10.17294/2330-0698.1438  0.198
2022 Sudhahar V, Shi Y, Kaplan JH, Ushio-Fukai M, Fukai T. Whole-Transcriptome Sequencing Analyses of Nuclear Antixoxidant-1 in Endothelial Cells: Role in Inflammation and Atherosclerosis. Cells. 11. PMID 36139494 DOI: 10.3390/cells11182919  0.197
2007 Shi Y, Jiang MT, Su J, Hutchins W, Konorev E, Baker JE. Mitochondrial big conductance KCa channel and cardioprotection in infant rabbit heart Journal of Cardiovascular Pharmacology. 50: 497-502. PMID 18030058 DOI: 10.1097/Fjc.0B013E318137991D  0.197
2019 Emelyanova L, Boukatina A, Myers C, Oyarzo J, Lustgarten J, Shi Y, Jahangir A. High calories but not fat content of lard-based diet contribute to impaired mitochondrial oxidative phosphorylation in C57BL/6J mice heart. Plos One. 14: e0217045. PMID 31265457 DOI: 10.1371/Journal.Pone.0217045  0.197
2015 Cho CC, Shi Y, Shearer R, Sulemanjee NZ, Zwicke DL, Hastings TE, Cheema OM, Thohan V. Echocardiographic Predictors of Admission Among Patients With Heart Failure With Reduced Ejection Fraction Journal of Patient-Centered Research and Reviews. 2: 204. DOI: 10.17294/2330-0698.1222  0.194
2017 Yue Y, Hou S, Wang X, Zhan L, Cao G, Li G, Shi Y, Zhang P, Hong W, Lin H, Liu B, Shi F, Yang Y, Jin Y. Role and convergent evolution of competing RNA secondary structures in mutually exclusive splicing. Rna Biology. 0. PMID 28277933 DOI: 10.1080/15476286.2017.1294308  0.193
2022 Shi Y, Wang M, Liu D, Ullah S, Ma X, Yang H, Liu B. Super-enhancers in esophageal carcinoma: Transcriptional addictions and therapeutic strategies. Frontiers in Oncology. 12: 1036648. PMID 36387198 DOI: 10.3389/fonc.2022.1036648  0.192
1997 Shi Y, Lee JS, Galvin KM. Everything you have ever wanted to know about Yin Yang 1.. Biochimica Et Biophysica Acta - Reviews On Cancer. 1332. PMID 9141463 DOI: 10.1016/S0304-419X(96)00044-3  0.192
2013 Shi Y, Jiang H. rSeqDiff: detecting differential isoform expression from RNA-Seq data using hierarchical likelihood ratio test. Plos One. 8: e79448. PMID 24260225 DOI: 10.1371/journal.pone.0079448  0.191
2016 Shi Y, Pedersen R, Rappelt M, Shearer R, Sulemanjee NZ, Zwicke DL, Hastings TE, Cheema OM, Thohan V. The Association Between Doppler Measures of Cardiac Function and Outcomes in Patients With Left Ventricular Ejection Fraction ≤ 40% Undergoing Noncardiovascular Surgeries Journal of Patient-Centered Research and Reviews. 3: 236-237. DOI: 10.17294/2330-0698.1422  0.191
2021 Dong H, Li L, Zhu X, Shi J, Fu Y, Zhang S, Shi Y, Xu B, Zhang J, Shi F, Jin Y. Complex RNA Secondary Structures Mediate Mutually Exclusive Splicing of Coleoptera . Frontiers in Genetics. 12: 644238. PMID 33859670 DOI: 10.3389/fgene.2021.644238  0.189
2013 Liu WB, Shi Y, Yao LL, Zhou Y, Ye BC. Prediction and characterization of small non-coding RNAs related to secondary metabolites in Saccharopolyspora erythraea. Plos One. 8: e80676. PMID 24236194 DOI: 10.1371/journal.pone.0080676  0.188
2001 Liu J, Shi Y, Yang Y. Solvation-Induced Morphology Effects on the Performance of Polymer-Based Photovoltaic Devices Advanced Functional Materials. 11: 420. DOI: 10.1002/1616-3028(200112)11:6<420::Aid-Adfm420>3.0.Co;2-K  0.188
2015 Shi Y, Chinnaiyan AM, Jiang H. rSeqNP: a non-parametric approach for detecting differential expression and splicing from RNA-Seq data. Bioinformatics (Oxford, England). 31: 2222-4. PMID 25717189 DOI: 10.1093/bioinformatics/btv119  0.188
2016 Guzman-Gutierrez G, Shi Y, Rappelt M, Jahangir A, Thohan V. Advanced Heart Failure Treatment Options Among the Elderly Journal of Patient-Centered Research and Reviews. 3: 199-206. DOI: 10.17294/2330-0698.1410  0.187
2005 Shi Y, Xiang R, Horváth C, Wilkins JA. Design and synthesis of a solid-phase fluorescent mass tag. Journal of Separation Science. 28: 1812-7. PMID 16224977 DOI: 10.1002/Jssc.200500115  0.187
2022 Dong H, Xu B, Guo P, Zhang J, Yang X, Li L, Fu Y, Shi J, Zhang S, Zhu Y, Shi Y, Zhou F, Bian L, You W, Shi F, et al. Hidden RNA pairings counteract the "first-come, first-served" splicing principle to drive stochastic choice in splice variants. Science Advances. 8: eabm1763. PMID 35080968 DOI: 10.1126/sciadv.abm1763  0.187
2016 Shi Y, Pedersen R, Rappelt MW, Shearer R, Sulemanjee N, Zwicke D, Hastings T, Omar C, Thohan V. RISK STRATIFICATION OF PATIENTS UNDERGOING MAJOR NON-CARDIAC SURGERY AND IMPLICATIONS OF PREOPERATIVE ECHOCARDIOGRAPHY Journal of the American College of Cardiology. 67: 1458. DOI: 10.1016/S0735-1097(16)31459-0  0.187
2009 Whitethouse J, Noll L, Kaul S, Jones D, Xu H, Shi Y, Pritchard K, Oldham K, Gourlay D. QS166. Intestinal Vascular Dysfunction in Necrotizing Enterocolitis Journal of Surgical Research. 151: 289. DOI: 10.1016/J.Jss.2008.11.465  0.186
2015 Shi Y, Cho C, Garlie L, Perez R, Shearer R, Sulemanjee N, Zwicke D, Hastings T, Cheema O, Thohan V. ECHOCARDIOGRAPHIC MARKERS OF IMPLANTABLE CARDIOVERTER-DEFIBRILLATOR THERAPY Journal of the American College of Cardiology. 65: A913. DOI: 10.1016/S0735-1097(15)60913-5  0.186
2004 Shi Y, Xiang R, Crawford JK, Colangelo CM, Horváth C, Wilkins JA. A simple solid phase mass tagging approach for quantitative proteomics. Journal of Proteome Research. 3: 104-11. PMID 14998170 DOI: 10.1021/Pr034081K  0.184
2013 Tan L, Xiong L, Xu W, Wu F, Huang N, Xu Y, Kong L, Zheng L, Schwartz L, Shi Y, Shi YG. Genome-wide comparison of DNA hydroxymethylation in mouse embryonic stem cells and neural progenitor cells by a new comparative hMeDIP-seq method. Nucleic Acids Research. 41: e84. PMID 23408859 DOI: 10.1093/nar/gkt091  0.184
2023 Ames K, Kaur I, Shi Y, Tong MM, Sinclair T, Hemmati S, Glushakow-Smith SG, Tein E, Gurska L, Steidl U, Dubin R, Shan J, Montagna C, Pradhan K, Verma A, et al. PI3-kinase deletion promotes myelodysplasia by dysregulating autophagy in hematopoietic stem cells. Science Advances. 9: eade8222. PMID 36812307 DOI: 10.1126/sciadv.ade8222  0.182
2007 Nandedkar SD, Konduri KS, Wang J, Xu H, Shi Y, Rickaby DA, Duzgunes N, Pritchard KA. The Effect of Daily Apolipoprotein A-I Mimetic Therapy on Pro-Inflammatory High Density Lipoprotein in a Murine Model of Asthma The Journal of Allergy and Clinical Immunology. 119. DOI: 10.1016/J.Jaci.2006.12.509  0.18
2022 Shi Y, Ma X, Shen W, Liu T, Liang L, Liu S, Shen Z, Zhang Y, Zhang P. Evaluation of the EdgeSeq Precision Immuno-Oncology Panel for Gene Expression Profiling From Clinical Formalin-Fixed Paraffin-Embedded Tumor Specimens. Frontiers in Cell and Developmental Biology. 10: 899353. PMID 35712667 DOI: 10.3389/fcell.2022.899353  0.18
2022 Shi Y, Lee JH, Kang H, Jiang H. A Two-Part Mixed Model for Differential Expression Analysis in Single-Cell High-Throughput Gene Expression Data. Genes. 13. PMID 35205420 DOI: 10.3390/genes13020377  0.178
2020 Hong W, Shi Y, Xu B, Jin Y. RNA secondary structures in Dscam1 mutually exclusive splicing: Unique evolutionary signature from the midge. Rna (New York, N.Y.). PMID 32471818 DOI: 10.1261/rna.075259.120  0.177
2023 Xia Y, Jin Z, Zhang C, Ouyang L, Dong Y, Li J, Guo L, Jing B, Shi Y, Miao S, Xi R. TAGET: a toolkit for analyzing full-length transcripts from long-read sequencing. Nature Communications. 14: 5935. PMID 37741817 DOI: 10.1038/s41467-023-41649-0  0.177
2000 Shi Y, Liu J, Yang Y. Device performance and polymer morphology in polymer light emitting diodes: morphology dependent emission spectra Macromolecular Symposia. 154: 187-198. DOI: 10.1002/1521-3900(200004)154:1<187::Aid-Masy187>3.0.Co;2-G  0.176
2023 Dang T, Yu J, Yu Y, Jiang J, Shi Y, Yu S, Peng C, Xiong Y, Long P, Zhou W, Dai D. GPX4 inhibits apoptosis of thyroid cancer cells through regulating the FKBP8/Bcl-2 axis. Cancer Biomarkers : Section a of Disease Markers. PMID 38250761 DOI: 10.3233/CBM-230220  0.175
2019 Huang J, Hu X, Zhao Y, Shi Y, Ding H, Xv J, Ren J, Wu R, Zhao Z. Genetic factors associated with enhanced expression in Tn3/Tn4401 chimeras. Antimicrobial Agents and Chemotherapy. PMID 31844015 DOI: 10.1128/AAC.01836-19  0.172
2016 Nilakantan V, Singh M, Perez RM, Shi Y, Dalmar A, Sahajpal A. Racial Disparities in Outcomes Following Kidney Transplantation: A Single-Center Experience Journal of Patient-Centered Research and Reviews. 3: 9-19. DOI: 10.17294/2330-0698.1203  0.167
2021 Zhang X, Shi Y, Ramesh KH, Naeem R, Wang Y. Karyotypic complexity, TP53 pathogenic variants, and increased number of variants on Next-Generation Sequencing are associated with disease progression in a North American Adult T-Cell Leukemia/Lymphoma cohort. International Journal of Laboratory Hematology. PMID 33988304 DOI: 10.1111/ijlh.13577  0.167
2022 Song G, Shi Y, Meng L, Ma J, Huang S, Zhang J, Wu Y, Li J, Lin Y, Yang S, Rao D, Cheng Y, Lin J, Ji S, Liu Y, et al. Single-cell transcriptomic analysis suggests two molecularly subtypes of intrahepatic cholangiocarcinoma. Nature Communications. 13: 1642. PMID 35347134 DOI: 10.1038/s41467-022-29164-0  0.164
2010 Lu X, Shi Y, Lu Q, Ma Y, Luo J, Wang Q, Ji J, Jiang Q, Zhang C. Requirement for lamin B receptor and its regulation by importin {beta} and phosphorylation in nuclear envelope assembly during mitotic exit. The Journal of Biological Chemistry. 285: 33281-93. PMID 20576617 DOI: 10.1074/jbc.M110.102368  0.164
2018 Hu S, Ouyang Q, Cheng Q, Wang J, Feng F, Qiao L, Gan W, Shi Y, Wu D, Jiang X. Phenformin inhibits cell proliferation and induces cell apoptosis and autophagy in cholangiocarcinoma. Molecular Medicine Reports. PMID 29436644 DOI: 10.3892/mmr.2018.8573  0.164
2013 Du Y, Shi Y, Yang J, Chen X, Xue M, Zhou W, Peng YL. A serine/threonine-protein phosphatase PP2A catalytic subunit is essential for asexual development and plant infection in Magnaporthe oryzae. Current Genetics. 59: 33-41. PMID 23269362 DOI: 10.1007/s00294-012-0385-3  0.164
2024 Chen J, Wang B, Wang Y, Radermacher H, Qi J, Momoh J, Lammers T, Shi Y, Rix A, Kiessling F. mRNA Sonotransfection of Tumors with Polymeric Microbubbles: Co-Formulation versus Co-Administration. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2306139. PMID 38342634 DOI: 10.1002/advs.202306139  0.162
2022 Li J, Zhao JY, Shi Y, Fu HY, Huang MT, Meng JY, Gao SJ. Systematic and functional analysis of non-specific lipid transfer protein family genes in sugarcane under infection and salicylic acid treatment. Frontiers in Plant Science. 13: 1014266. PMID 36275567 DOI: 10.3389/fpls.2022.1014266  0.161
2016 Jin GH, Xu W, Shi Y, Wang LB. Celecoxib exhibits an anti-gastric cancer effect by targeting focal adhesion and leukocyte transendothelial migration-associated genes. Oncology Letters. 12: 2345-2350. PMID 27698798 DOI: 10.3892/ol.2016.4976  0.16
2015 Xiang Y, Li Q, Huang D, Tang X, Wang L, Shi Y, Zhang W, Yang T, Xiao C, Wang J. Preparation and antitumor effect of a toxin-linked conjugate targeting vascular endothelial growth factor receptor and urokinase plasminogen activator. Experimental Biology and Medicine (Maywood, N.J.). 240: 160-8. PMID 25125500 DOI: 10.1177/1535370214547154  0.159
2019 Shi Y, Lammers T. Combining Nanomedicine and Immunotherapy. Accounts of Chemical Research. PMID 31120725 DOI: 10.1021/acs.accounts.9b00148  0.158
2012 Shi Y, Fu X, Hua Y, Han Y, Lu Y, Wang J. The side population in human lung cancer cell line NCI-H460 is enriched in stem-like cancer cells. Plos One. 7: e33358. PMID 22428030 DOI: 10.1371/journal.pone.0033358  0.157
2016 Yue Y, Yang Y, Dai L, Cao G, Chen R, Hong W, Liu B, Shi Y, Meng Y, Shi F, Xiao M, Jin Y. Corrigendum: Long-range RNA pairings contribute to mutually exclusive splicing. Rna (New York, N.Y.). 22: 1640.2. PMID 27638915 DOI: 10.1261/rna.058008.116  0.156
2014 Lv H, Shi Y, Zhang L, Zhang D, Liu G, Yang Z, Li Y, Fei F, Zhang S. Polyploid giant cancer cells with budding and the expression of cyclin E, S-phase kinase-associated protein 2, stathmin associated with the grading and metastasis in serous ovarian tumor. Bmc Cancer. 14: 576. PMID 25106448 DOI: 10.1186/1471-2407-14-576  0.155
2022 Cui K, Chen T, Zhu Y, Shi Y, Guo Y, Qin J. Engineering placenta-like organoids containing endogenous vascular cells from human-induced pluripotent stem cells. Bioengineering & Translational Medicine. 8: e10390. PMID 36684087 DOI: 10.1002/btm2.10390  0.154
2016 Shen YN, He HG, Shi Y, Cao J, Yuan JY, Wang ZC, Shi CF, Zhu N, Wei YP, Liu F, Huang JL, Yang GS, Lu JH. Krüppel-like factor 8 promotes cancer stem cell-like traits in hepatocellular carcinoma through Wnt/β-catenin signaling. Molecular Carcinogenesis. PMID 27478926 DOI: 10.1002/mc.22532  0.153
2014 Liu Y, Lan L, Huang K, Wang R, Xu C, Shi Y, Wu X, Wu Z, Zhang J, Chen L, Wang L, Yu X, Zhu H, Lu B. Inhibition of Lon blocks cell proliferation, enhances chemosensitivity by promoting apoptosis and decreases cellular bioenergetics of bladder cancer: potential roles of Lon as a prognostic marker and therapeutic target in baldder cancer. Oncotarget. 5: 11209-24. PMID 25526030 DOI: 10.18632/oncotarget.2026  0.153
2020 Greenway J, Gilreath N, Patel S, Horimatsu T, Moses M, Kim D, Reid L, Ogbi M, Shi Y, Lu XY, Shukla M, Lee R, Huo Y, Young L, Kim HW, et al. Profiling of Histone Modifications Reveals Epigenomic Dynamics During Abdominal Aortic Aneurysm Formation in Mouse Models. Frontiers in Cardiovascular Medicine. 7: 595011. PMID 33195484 DOI: 10.3389/fcvm.2020.595011  0.151
2020 Luo H, Li J, Lin Q, Xiao X, Shi Y, Ye X, Wei Z, Liu Y, Xu J. Ultrasonic Irradiation and SonoVue Microbubbles-mediated RNA Interfering Targeting PRR11 Inhibits Breast Cancer Cells Proliferation and Metastasis but Promotes Apoptosis. Bioscience Reports. PMID 33057583 DOI: 10.1042/BSR20201854  0.151
2024 Chen N, Zhang Z, Liu X, Wang H, Guo RC, Wang H, Hu B, Shi Y, Zhang P, Liu Z, Yu Z. Sulfatase-Induced In Situ Formulation of Antineoplastic Supra-PROTACs. Journal of the American Chemical Society. PMID 38578841 DOI: 10.1021/jacs.4c00826  0.148
2017 Ji K, Fang L, Zhao H, Li Q, Shi Y, Xu C, Wang Y, Du L, Wang J, Liu Q. Ginger Oleoresin Alleviated γ-Ray Irradiation-Induced Reactive Oxygen Species via the Nrf2 Protective Response in Human Mesenchymal Stem Cells. Oxidative Medicine and Cellular Longevity. 2017: 1480294. PMID 29181121 DOI: 10.1155/2017/1480294  0.147
2016 Shi Y, Song Q, Hu D, Zhuang X, Yu S, Teng D. Oleanolic acid induced autophagic cell death in hepatocellular carcinoma cells via PI3K/Akt/mTOR and ROS-dependent pathway. The Korean Journal of Physiology & Pharmacology : Official Journal of the Korean Physiological Society and the Korean Society of Pharmacology. 20: 237-43. PMID 27162477 DOI: 10.4196/kjpp.2016.20.3.237  0.146
2021 Li W, Pan B, Shi Y, Wang M, Han T, Wang Q, Duan G, Fu H. Identification of poly(ADP-ribose)polymerase 1 and 2 (PARP1/2) as targets of andrographolide using an integrated chemical biology approach. Chemical Communications (Cambridge, England). PMID 34075974 DOI: 10.1039/d1cc02272e  0.145
2024 Shi Y, Yao M, Shen S, Wang L, Yao D. Abnormal expression of Krüppel-like transcription factors and their potential values in lung cancer. Heliyon. 10: e28292. PMID 38560274 DOI: 10.1016/j.heliyon.2024.e28292  0.145
2020 Song G, Shi Y, Zhang M, Goswami S, Afridi S, Meng L, Ma J, Chen Y, Lin Y, Zhang J, Liu Y, Jin Z, Yang S, Rao D, Zhang S, et al. Global immune characterization of HBV/HCV-related hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression. Cell Discovery. 6: 90. PMID 33298893 DOI: 10.1038/s41421-020-00214-5  0.143
2014 Shi Y, Wang E. Blastic plasmacytoid dendritic cell neoplasm: a clinicopathologic review. Archives of Pathology & Laboratory Medicine. 138: 564-9. PMID 24678689 DOI: 10.5858/arpa.2013-0101-RS  0.143
2008 Liu B, Ren Z, Shi Y, Guan C, Pan Z, Zong Z. Activation of signal transducers and activators of transcription 3 and overexpression of its target gene CyclinD1 in laryngeal carcinomas. The Laryngoscope. 118: 1976-80. PMID 18758380 DOI: 10.1097/MLG.0b013e31817fd3fa  0.142
2022 Deng P, Cui K, Shi Y, Zhu Y, Wang Y, Shao X, Qin J. Fluidic Flow Enhances the Differentiation of Placental Trophoblast-Like 3D Tissue from hiPSCs in a Perfused Macrofluidic Device. Frontiers in Bioengineering and Biotechnology. 10: 907104. PMID 35845423 DOI: 10.3389/fbioe.2022.907104  0.139
2023 Li D, Ainiwaer A, Zheng X, Wang M, Shi Y, Rousu Z, Hou X, Kang X, Maimaiti M, Wang H, Li J, Zhang C. Upregulation of LAG3 modulates the immune imbalance of CD4+ T-cell subsets and exacerbates disease progression in patients with alveolar echinococcosis and a mouse model. Plos Pathogens. 19: e1011396. PMID 37172058 DOI: 10.1371/journal.ppat.1011396  0.139
2014 Wei IH, Shi Y, Jiang H, Kumar-Sinha C, Chinnaiyan AM. RNA-Seq accurately identifies cancer biomarker signatures to distinguish tissue of origin. Neoplasia (New York, N.Y.). 16: 918-27. PMID 25425966 DOI: 10.1016/j.neo.2014.09.007  0.139
2016 Wang L, Xiang M, Liu Y, Sun N, Lu M, Shi Y, Wang X, Meng D, Chen S, Qin J. Human induced pluripotent stem cells derived endothelial cells mimicking vascular inflammatory response under flow. Biomicrofluidics. 10: 014106. PMID 26858818 DOI: 10.1063/1.4940041  0.139
2016 Yue Y, Meng Y, Ma H, Hou S, Cao G, Hong W, Shi Y, Guo P, Liu B, Shi F, Yang Y, Jin Y. A large family of Dscam genes with tandemly arrayed 5' cassettes in Chelicerata. Nature Communications. 7: 11252. PMID 27080167 DOI: 10.1038/ncomms11252  0.139
2011 Meng F, Yao D, Shi Y, Kabakoff J, Wu W, Reicher J, Ma Y, Moosmann B, Masliah E, Lipton SA, Gu Z. Oxidation of the cysteine-rich regions of parkin perturbs its E3 ligase activity and contributes to protein aggregation. Molecular Neurodegeneration. 6: 34. PMID 21595948 DOI: 10.1186/1750-1326-6-34  0.138
2019 Shi Y, Zhang Y, Li Y, Tong C. Retracted Article: Sauchinone inhibits high glucose-induced oxidative stress and apoptosis in retinal pigment epithelial cells. Rsc Advances. 9: 17065-17071. PMID 35519842 DOI: 10.1039/c9ra02817j  0.138
2017 Zhu JN, Jiang L, Jiang JH, Yang X, Li XY, Zeng JX, Shi RY, Shi Y, Pan XR, Han ZP, Wei LX. Hepatocyte nuclear factor-1beta enhances the stemness of hepatocellular carcinoma cells through activation of the Notch pathway. Scientific Reports. 7: 4793. PMID 28684878 DOI: 10.1038/s41598-017-04116-7  0.137
2018 Wu D, Hu D, Chen H, Shi G, Fetahu IS, Wu F, Rabidou K, Fang R, Tan L, Xu S, Liu H, Argueta C, Zhang L, Mao F, Yan G, ... ... Shi Y, ... ... Shi YG, et al. Glucose-regulated phosphorylation of TET2 by AMPK reveals a pathway linking diabetes to cancer. Nature. PMID 30022161 DOI: 10.1038/S41586-018-0350-5  0.136
2022 Wang T, Gao Z, Zhang Y, Hong Y, Tang Y, Shan K, Kong X, Wang Z, Shi Y, Ding D. A supramolecular self-assembled nanomaterial for synergistic therapy of immunosuppressive tumor. Journal of Controlled Release : Official Journal of the Controlled Release Society. PMID 36116581 DOI: 10.1016/j.jconrel.2022.09.018  0.135
2018 Liu LZ, Zhang Z, Zheng BH, Shi Y, Duan M, Ma LJ, Wang ZC, Dong LQ, Dong PP, Shi JY, Zhang S, Ding ZB, Ke AW, Cao Y, Zhang XM, et al. CCL15 recruits suppressive monocytes to facilitate immune escape and disease progression in hepatocellular carcinoma. Hepatology (Baltimore, Md.). PMID 30070719 DOI: 10.1002/Hep.30134  0.134
2021 Cui K, Zhu Y, Shi Y, Chen T, Wang H, Guo Y, Deng P, Liu H, Shao X, Qin J. Establishment of Trophoblast-Like Tissue Model from Human Pluripotent Stem Cells in Three-Dimensional Culture System. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2100031. PMID 34813178 DOI: 10.1002/advs.202100031  0.134
2021 Hong W, Zhang J, Dong H, Shi Y, Ma H, Zhou F, Xu B, Fu Y, Zhang S, Hou S, Li G, Wu Y, Chen S, Zhu X, You W, et al. Intron-targeted mutagenesis reveals roles for Dscam1 RNA pairing architecture-driven splicing bias in neuronal wiring. Cell Reports. 36: 109373. PMID 34260933 DOI: 10.1016/j.celrep.2021.109373  0.134
2007 Shi Y, Elmets CA, Smith JW, Liu YT, Chen YR, Huang CP, Zhu W, Ananthaswamy HN, Gallo RL, Huang CM. Quantitative proteomes and in vivo secretomes of progressive and regressive UV-induced fibrosarcoma tumor cells: mimicking tumor microenvironment using a dermis-based cell-trapped system linked to tissue chamber. Proteomics. 7: 4589-600. PMID 18022937 DOI: 10.1002/Pmic.200700425  0.133
2022 Zhang W, Wang H, Wang T, Ding D, Hou J, Shi Y, Huang Y. A Supramolecular Self-Assembling Nanoagent by Inducing Intracellular Aggregation of PSMA for Prostate Cancer Molecularly Targeted Theranostics. Small (Weinheim An Der Bergstrasse, Germany). e2203325. PMID 35986691 DOI: 10.1002/smll.202203325  0.133
2021 Sha S, Shi Y, Tang Y, Jia L, Han X, Liu Y, Li X, Ma Y. Mycobacterium tuberculosis Rv1987 protein induces M2 polarization of macrophages through activating the PI3K/Akt1/mTOR signaling pathway. Immunology and Cell Biology. PMID 33469941 DOI: 10.1111/imcb.12436  0.133
2022 Chen C, Wang Z, Jia S, Zhang Y, Ji S, Zhao Z, Kwok RTK, Lam JWY, Ding D, Shi Y, Tang BZ. Evoking Highly Immunogenic Ferroptosis Aided by Intramolecular Motion-Induced Photo-Hyperthermia for Cancer Therapy. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2104885. PMID 35132824 DOI: 10.1002/advs.202104885  0.132
2021 Zhao X, Shi Y, Pan T, Lu D, Xiong J, Li B, Xin H. Single-Cell Surgery and Intracellular Organelle Manipulation Via Thermoplasmonics Combined Optical Trapping. Nano Letters. PMID 34968073 DOI: 10.1021/acs.nanolett.1c04075  0.131
2009 Du J, Wei N, Xu H, Ge Y, Vásquez-Vivar J, Guan T, Oldham KT, Pritchard KA, Shi Y. Identification and functional characterization of phosphorylation sites on GTP cyclohydrolase I. Arteriosclerosis, Thrombosis, and Vascular Biology. 29: 2161-8. PMID 19762783 DOI: 10.1161/Atvbaha.109.194464  0.131
2011 Shi Y, Yamauchi T, Gaultier A, Takimoto S, Campana WM, Gonias SL. Regulation of cytokine expression by Schwann cells in response to α2-macroglobulin binding to LRP1. Journal of Neuroscience Research. 89: 544-51. PMID 21290408 DOI: 10.1002/Jnr.22576  0.128
2018 Ma C, Wen B, Zhang Q, Shao P, Gu W, Qu K, Shi Y, Wang B. Polydatin regulates the apoptosis and autophagy of fibroblasts obtained from patients with ankylosing spondylitis. Biological & Pharmaceutical Bulletin. PMID 30333377 DOI: 10.1248/bpb.b18-00522  0.127
2023 Koyama Y, Okazaki H, Shi Y, Mezawa Y, Wang Z, Sakimoto M, Ishizuka A, Ito Y, Koyama T, Daigo Y, Takano A, Miyagi Y, Yokose T, Yamashita T, Sugahara K, et al. Increased RUNX3 expression mediates tumor-promoting ability of human breast cancer-associated fibroblasts. Cancer Medicine. PMID 37641472 DOI: 10.1002/cam4.6421  0.127
2022 Yan S, Peng Y, Lu J, Shakil S, Shi Y, Crossman DK, Johnson WH, Liu S, Rokosh DG, Lincoln J, Wang Q, Jiao K. Differential requirement of DICER1 activity during development of mitral and tricuspid valves. Journal of Cell Science. PMID 35946425 DOI: 10.1242/jcs.259783  0.126
2024 Gao Q, Xu G, Wang G, Wang W, Zhu C, Shi Y, Guo C, Cong J, Ming H, Su D, Ma X. RNA-seq analysis-based study on the effects of gestational diabetes mellitus on macrosomia. Frontiers in Endocrinology. 15: 1330704. PMID 38660519 DOI: 10.3389/fendo.2024.1330704  0.125
2020 Li X, Wang Y, Wang S, Liang C, Pu G, Chen Y, Wang L, Xu H, Shi Y, Yang Z. A strong CD8 T cell-stimulating supramolecular hydrogel. Nanoscale. PMID 31913398 DOI: 10.1039/C9Nr08916K  0.125
2019 Wang Y, Zhan J, Chen Y, Ai S, Li L, Wang L, Shi Y, Zheng J, Yang Z. Selective pericellular hydrogelation by the overexpression of an enzyme and a membrane receptor. Nanoscale. PMID 31314031 DOI: 10.1039/C9Nr04262H  0.124
2022 Cao H, Gao H, Wang L, Cheng Y, Wu X, Shen X, Wang H, Wang Z, Zhan P, Liu J, Li Z, Kong D, Shi Y, Ding D, Wang Y. Biosynthetic Dendritic Cell-Exocytosed Aggregation-Induced Emission Nanoparticles for Synergistic Photodynamic Immunotherapy. Acs Nano. PMID 35960889 DOI: 10.1021/acsnano.2c03597  0.124
2023 Liu Z, Feng Z, Chen M, Zhan J, Wu R, Shi Y, Xue Y, Liu R, Zhu JJ, Zhang J. An orthogonally activatable CRISPR-Cas13d nanoprodrug to reverse chemoresistance for enhanced chemo-photodynamic therapy. Chemical Science. 14: 4102-4113. PMID 37063792 DOI: 10.1039/d3sc00020f  0.123
2015 Li QY, Shi Y, Huang DH, Yang T, Wang JH, Yan GH, Wang HY, Tang XJ, Xiao CY, Zhang WJ, Zhang M, Wang L, Gong Y, Yang W, Wu XY, et al. Cytokine-induced killer cells combined with dendritic cells inhibited liver cancer cells. International Journal of Clinical and Experimental Medicine. 8: 5601-10. PMID 26131143  0.123
2019 Zheng D, Chen Y, Ai S, Zhang R, Gao Z, Liang C, Cao L, Chen Y, Hong Z, Shi Y, Wang L, Li X, Yang Z. Tandem Molecular Self-Assembly Selectively Inhibits Lung Cancer Cells by Inducing Endoplasmic Reticulum Stress. Research (Washington, D.C.). 2019: 4803624. PMID 31912037 DOI: 10.34133/2019/4803624  0.123
2019 Shi Y, Manis M, Long J, Wang K, Sullivan PM, Remolina Serrano J, Hoyle R, Holtzman DM. Microglia drive APOE-dependent neurodegeneration in a tauopathy mouse model. The Journal of Experimental Medicine. PMID 31601677 DOI: 10.1084/Jem.20190980  0.122
2023 Wang C, Gao Z, Shi Y, Qi X. Metal-responsive elements confer cadmium response in Arabidopsis. Planta. 257: 53. PMID 36773095 DOI: 10.1007/s00425-023-04093-4  0.122
2014 Mehra R, Shi Y, Udager AM, Prensner JR, Sahu A, Iyer MK, Siddiqui J, Cao X, Wei J, Jiang H, Feng FY, Chinnaiyan AM. A novel RNA in situ hybridization assay for the long noncoding RNA SChLAP1 predicts poor clinical outcome after radical prostatectomy in clinically localized prostate cancer. Neoplasia (New York, N.Y.). 16: 1121-7. PMID 25499224 DOI: 10.1016/J.Neo.2014.11.006  0.122
2023 Chen X, Sokirniy I, Wang X, Jiang M, Mseis-Jackson N, Williams C, Mayes K, Jiang N, Puls B, Du Q, Shi Y, Li H. MicroRNA-375 is induced during astrocyte-to-neuron reprogramming and promotes survival of reprogrammed neurons when overexpressed. Biorxiv : the Preprint Server For Biology. PMID 37503054 DOI: 10.1101/2023.07.10.548401  0.121
2023 Wang Y, Song Y, He Y, Wang Y, Maurer J, Kiessling F, Lammers T, Wang F, Shi Y. Direct immunoactivation by chemotherapeutic drugs in cancer treatment. Advanced Therapeutics. 6: 2300209. PMID 38249990 DOI: 10.1002/adtp.202300209  0.121
2016 Jia S, Liu Y, Shi Y, Ma Y, Hu Y, Wang M, Li X. Magnesium Supplementation Potentiates Neural Stem Cell Proliferation in the Hippocampus of Young and Aged Mice. Journal of Cellular Physiology. PMID 26754806 DOI: 10.1002/jcp.25306  0.12
2024 Tian F, Mu H, Shi Y, Chen X, Zou X, Gao X, Wang X. Clinical evaluation of Giomer and self-etch adhesive compared with nanofilled resin composite and etch-and-rinse adhesive - Results at 8 years. Dental Materials : Official Publication of the Academy of Dental Materials. PMID 38806383 DOI: 10.1016/j.dental.2024.05.013  0.12
2006 Ma XT, Xu B, An LL, Dong CY, Lin YM, Shi Y, Wu KF. Vaccine with beta-defensin 2-transduced leukemic cells activates innate and adaptive immunity to elicit potent antileukemia responses. Cancer Research. 66: 1169-76. PMID 16424055 DOI: 10.1158/0008-5472.CAN-05-2891  0.12
2023 Chen X, Sokirniy I, Wang X, Jiang M, Mseis-Jackson N, Williams C, Mayes K, Jiang N, Puls B, Du Q, Shi Y, Li H. MicroRNA-375 Is Induced during Astrocyte-to-Neuron Reprogramming and Promotes Survival of Reprogrammed Neurons when Overexpressed. Cells. 12. PMID 37681934 DOI: 10.3390/cells12172202  0.12
2015 Liu XL, Pan BW, Zhang WH, Yang C, Yang J, Shi Y, Feng TT, Zhou Y, Yuan WC. A highly efficient and eco-friendly method for the synthesis of 1,3-indandione ring-fused 3-oxindoles bearing two contiguous quaternary stereocenters via an aldol reaction in aqueous media. Organic & Biomolecular Chemistry. 13: 601-11. PMID 25382357 DOI: 10.1039/c4ob02103g  0.119
2009 Shi Y, Pontrello CG, DeFea KA, Reichardt LF, Ethell IM. Focal adhesion kinase acts downstream of EphB receptors to maintain mature dendritic spines by regulating cofilin activity. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 29: 8129-42. PMID 19553453 DOI: 10.1523/Jneurosci.4681-08.2009  0.119
2023 Xiong J, Shi Y, Pan T, Lu D, He Z, Wang D, Li X, Zhu G, Li B, Xin H. Wake-Riding Effect-Inspired Opto-Hydrodynamic Diatombot for Non-Invasive Trapping and Removal of Nano-Biothreats. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2301365. PMID 37012610 DOI: 10.1002/advs.202301365  0.119
2023 Shi TT, Huang Y, Li Y, Dai XL, He YH, Ding JC, Ran T, Shi Y, Yuan Q, Li WJ, Liu W. MAVI1, an endoplasmic reticulum-localized microprotein, suppresses antiviral innate immune response by targeting MAVS on mitochondrion. Science Advances. 9: eadg7053. PMID 37656786 DOI: 10.1126/sciadv.adg7053  0.119
2022 Hou X, Shi Y, Kang X, Rousu Z, Li D, Wang M, Ainiwaer A, Zheng X, Wang M, Jiensihan B, Li L, Li J, Wang H, Zhang C. : The establishment of the metacestode in the liver is associated with control of the CD4 T-cell-mediated immune response in patients with cystic echinococcosis and a mouse model. Frontiers in Cellular and Infection Microbiology. 12: 983119. PMID 36046744 DOI: 10.3389/fcimb.2022.983119  0.119
2021 Saeed M, Chen F, Ye J, Shi Y, Lammers T, De Geest BG, Xu ZP, Yu H. From Design to Clinic: Engineered Nanobiomaterials for Immune Normalization Therapy of Cancer. Advanced Materials (Deerfield Beach, Fla.). e2008094. PMID 34048101 DOI: 10.1002/adma.202008094  0.119
2023 Shi Y, Shi Y, Ji W, Li X, Shi Z, Hou J, Li W, Fu Y. Thyroid Hormone Signaling Is Required for Dynamic Variation in Opsins in the Retina during Metamorphosis of the Japanese Flounder (). Biology. 12. PMID 36979089 DOI: 10.3390/biology12030397  0.118
2023 Read TA, Cisterna BA, Skruber K, Ahmadieh S, Lindamood HL, Vitriol JA, Shi Y, Lefebvre AEYT, Black JB, Butler MT, Bear JA, Cherezova A, Ilatovskaya DV, Weintraub NL, Vitriol EA. The actin binding protein profilin 1 is critical for mitochondria function. Biorxiv : the Preprint Server For Biology. PMID 37609280 DOI: 10.1101/2023.08.07.552354  0.118
2019 Sun JJ, Li HL, Ma H, Shi Y, Yin LR, Guo SJ. SMYD2 promotes cervical cancer growth by stimulating cell proliferation. Cell & Bioscience. 9: 75. PMID 31548876 DOI: 10.1186/s13578-019-0340-9  0.118
2016 Hengjiu T, Jianwei J, Shi Y, Zhiming Z, Laghari MY, Narejo NT, Lashari P. Complete mitochondrial genome of Eagle Owl (Bubo bubo, Strigiformes; Strigidae) from China. Mitochondrial Dna. Part a. Dna Mapping, Sequencing, and Analysis. 27: 1455-6. PMID 25162495 DOI: 10.3109/19401736.2014.953090  0.118
2008 Nakatsuji T, Shi Y, Zhu W, Huang CP, Chen YR, Lee DY, Smith JW, Zouboulis CC, Gallo RL, Huang CM. Bioengineering a humanized acne microenvironment model: proteomics analysis of host responses to Propionibacterium acnes infection in vivo. Proteomics. 8: 3406-15. PMID 18651708 DOI: 10.1002/Pmic.200800044  0.117
2016 Teng DC, Sun J, An YQ, Hu ZH, Liu P, Ma YC, Han B, Shi Y. Role of PHLPP1 in inflammation response: Its loss contributes to gliomas development and progression. International Immunopharmacology. 34: 229-234. PMID 26971226 DOI: 10.1016/j.intimp.2016.02.034  0.117
2022 Song G, Shi Y, Meng L, Ma J, Huang S, Zhang J, Wu Y, Li J, Lin Y, Yang S, Rao D, Cheng Y, Lin J, Ji S, Liu Y, et al. Publisher Correction: Single-cell transcriptomic analysis suggests two molecularly distinct subtypes of intrahepatic cholangiocarcinoma. Nature Communications. 13: 2848. PMID 35581192 DOI: 10.1038/s41467-022-30599-8  0.116
2015 Ma J, Zhang X, Liu Y, Yu H, Liu L, Shi Y, Li Y, Qin J. Patterning hypoxic multicellular spheroids in a 3D matrix - a promising method for anti-tumor drug screening. Biotechnology Journal. PMID 26647062 DOI: 10.1002/biot.201500183  0.116
2020 Biancacci I, Sun Q, Möckel D, Gremse F, Rosenhain S, Kiessling F, Bartneck M, Hu Q, Thewissen M, Storm G, Hennink WE, Shi Y, Rijcken CJF, Lammers T, Sofias AM. Optical imaging of the whole-body to cellular biodistribution of clinical-stage PEG-b-pHPMA-based core-crosslinked polymeric micelles. Journal of Controlled Release : Official Journal of the Controlled Release Society. PMID 33010332 DOI: 10.1016/j.jconrel.2020.09.046  0.116
2016 Udager AM, DeMarzo AM, Shi Y, Hicks JL, Cao X, Siddiqui J, Jiang H, Chinnaiyan AM, Mehra R. Concurrent nuclear ERG and MYC protein overexpression defines a subset of locally advanced prostate cancer: Potential opportunities for synergistic targeted therapeutics. The Prostate. 76: 845-53. PMID 27159573 DOI: 10.1002/Pros.23175  0.115
2023 Zhu Z, Liao R, Shi Y, Li J, Cao J, Liao B, Wu J, Li G. Polystyrene nanoplastics induce apoptosis of human kidney proximal tubular epithelial cells via oxidative stress and MAPK signaling pathways. Environmental Science and Pollution Research International. PMID 37792190 DOI: 10.1007/s11356-023-30155-x  0.115
2023 Li HL, Sun JJ, Ma H, Liu SJ, Li N, Guo SJ, Shi Y, Xu YY, Qi ZY, Wang YQ, Wang F, Guo RM, Liu D, Xue FX. Erratum: [Corrigendum] MicroRNA‑23a inhibits endometrial cancer cell development by targeting SIX1. Oncology Letters. 26: 445. PMID 37720668 DOI: 10.3892/ol.2023.14032  0.115
2021 Lin J, Cao Y, Yang X, Li G, Shi Y, Wang D, Long J, Song Y, Mao J, Xie F, Bai Y, Zhang L, Yang X, Wan X, Wang A, et al. Mutational spectrum and precision oncology for biliary tract carcinoma. Theranostics. 11: 4585-4598. PMID 33754015 DOI: 10.7150/thno.56539  0.115
2022 Tcw J, Qian L, Pipalia NH, Chao MJ, Liang SA, Shi Y, Jain BR, Bertelsen SE, Kapoor M, Marcora E, Sikora E, Andrews EJ, Martini AC, Karch CM, Head E, et al. Cholesterol and matrisome pathways dysregulated in astrocytes and microglia. Cell. 185: 2213-2233.e25. PMID 35750033 DOI: 10.1016/j.cell.2022.05.017  0.115
2015 Shi Y, Song Q, Yu S, Hu D, Zhuang X. Microvascular invasion in hepatocellular carcinoma overexpression promotes cell proliferation and inhibits cell apoptosis of hepatocellular carcinoma via inhibiting miR-199a expression. Oncotargets and Therapy. 8: 2303-10. PMID 26347410 DOI: 10.2147/OTT.S86807  0.114
2014 Shi Y, Xu X, Li H, Xu Q, Xu J. [Bioinformatics analysis of the expansin gene family in rice]. Yi Chuan = Hereditas / Zhongguo Yi Chuan Xue Hui Bian Ji. 36: 809-20. PMID 25143279 DOI: 10.3724/SP.J.1005.2014.0809  0.114
2015 Shi Y, Ma J, Zhang X, Li H, Jiang L, Qin J. Hypoxia combined with spheroid culture improves cartilage specific function in chondrocytes. Integrative Biology : Quantitative Biosciences From Nano to Macro. 7: 289-97. PMID 25614382 DOI: 10.1039/c4ib00273c  0.114
2023 Chai J, Choudhuri J, Wang Q, Fang Y, Shi Y, Kamel J, Shah N, Sica RA, Kornblum N, Konopleva M, Mantzaris I, Shastri A, Gritsman K, Verma A, Goldfinger M, et al. Acute myeloid leukemias with JAK2/STAT mutations are associated with PD-L1 upregulation. Leukemia & Lymphoma. 1-11. PMID 37424335 DOI: 10.1080/10428194.2023.2232494  0.113
2023 Ye D, Desai J, Shi J, Liu SM, Shen W, Liu T, Shi Y, Wang D, Liang L, Yang S, Ma X, Jin W, Zhang P, Huang R, Shen Z, et al. Co-enrichment of CD8-positive T cells and macrophages is associated with clinical benefit of tislelizumab in solid tumors. Biomarker Research. 11: 25. PMID 36879284 DOI: 10.1186/s40364-023-00465-w  0.112
2018 Lu Z, Liu Y, Shi Y, Shi X, Wang X, Xu C, Zhao H, Dong Q. Curcumin protects cortical neurons against oxygen and glucose deprivation/reoxygenation injury through flotillin-1 and extracellular signal-regulated kinase1/2 pathway. Biochemical and Biophysical Research Communications. PMID 29353037 DOI: 10.1016/j.bbrc.2018.01.089  0.112
2019 Marks E, Shi Y, Wang Y. Two cases of phenotypic switch of primary cutaneous T cell lymphoma after treatment with an aggressive course and review of the literature. Virchows Archiv : An International Journal of Pathology. PMID 31218405 DOI: 10.1007/s00428-019-02599-5  0.112
2020 Shang Y, Ma C, Zhang J, Wang Z, Ren C, Luo X, Peng R, Liu J, Mao J, Shi Y, Fan G. Bifunctional supramolecular nanofiber inhibits atherosclerosis by enhancing plaque stability and anti-inflammation in apoE mice. Theranostics. 10: 10231-10244. PMID 32929345 DOI: 10.7150/thno.48410  0.112
2006 Shi Y, Ethell IM. Integrins control dendritic spine plasticity in hippocampal neurons through NMDA receptor and Ca2+/calmodulin-dependent protein kinase II-mediated actin reorganization. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 1813-22. PMID 16467530 DOI: 10.1523/Jneurosci.4091-05.2006  0.111
2018 Hu J, Shi Y, Liu Y, Chang S. Anatomical structure of Camellia oleifera shell. Protoplasma. PMID 29868989 DOI: 10.1007/s00709-018-1271-8  0.111
2016 Shi Y, Zhao X, Durkin L, Rogers HJ, Hsi ED. Aberrant activation-induced cytidine deaminase expression in Philadelphia chromosome positive B-cell acute lymphoblastic leukemia. Human Pathology. PMID 26980048 DOI: 10.1016/j.humpath.2016.01.008  0.111
2019 Shi Y, Yang X, Xue X, Sun D, Cai P, Song Q, Zhang B, Qin L. HANR promotes lymphangiogenesis of hepatocellular carcinoma via secreting miR-296 exosome and regulating EAG1/VEGFA signaling in HDLEC cells. Journal of Cellular Biochemistry. PMID 31127654 DOI: 10.1002/jcb.29036  0.111
2019 Saeed M, Gao J, Shi Y, Lammers T, Yu H. Engineering Nanoparticles to Reprogram the Tumor Immune Microenvironment for Improved Cancer Immunotherapy. Theranostics. 9: 7981-8000. PMID 31754376 DOI: 10.7150/thno.37568  0.111
2018 Cao G, Shi Y, Zhang J, Ma H, Hou S, Dong H, Hong W, Chen S, Li H, Wu Y, Guo P, Shao X, Xu B, Shi F, Meng Y, et al. A chelicerate-specific burst of nonclassical Dscam diversity. Bmc Genomics. 19: 66. PMID 29351731 DOI: 10.1186/s12864-017-4420-0  0.111
2021 Zhang Y, Wang S, Wu Y, Hou W, Yuan L, Shen C, Wang J, Ye J, Zheng Q, Ma J, Xu J, Wei M, Li Z, Nian S, Xiong H, ... ... Shi Y, et al. Virus-Free and Live-Cell Visualizing SARS-CoV-2 Cell Entry for Studies of Neutralizing Antibodies and Compound Inhibitors. Small Methods. 5: 2001031. PMID 33614907 DOI: 10.1002/smtd.202001031  0.109
2022 Jin G, Zhang J, Cao T, Chen B, Tian Y, Shi Y. Exosome-mediated lncRNA SND1-IT1 from gastric cancer cells enhances malignant transformation of gastric mucosa cells via up-regulating SNAIL1. Journal of Translational Medicine. 20: 284. PMID 35739527 DOI: 10.1186/s12967-022-03306-w  0.109
2021 Wang C, Xiong M, Gratuze M, Bao X, Shi Y, Andhey PS, Manis M, Schroeder C, Yin Z, Madore C, Butovsky O, Artyomov M, Ulrich JD, Holtzman DM. Selective removal of astrocytic APOE4 strongly protects against tau-mediated neurodegeneration and decreases synaptic phagocytosis by microglia. Neuron. PMID 33831349 DOI: 10.1016/j.neuron.2021.03.024  0.109
2015 Shi Y, Wang E. Hepatosplenic T-Cell Lymphoma: A Clinicopathologic Review With an Emphasis on Diagnostic Differentiation From Other T-Cell/Natural Killer-Cell Neoplasms. Archives of Pathology & Laboratory Medicine. 139: 1173-80. PMID 26317456 DOI: 10.5858/arpa.2014-0079-RS  0.107
2016 Shi Y, Wang F, Tiwari S, Yesilbas M, Steubesand N, Weitkamp JT, Klüter T, Lippross S, Eglin D, Seekamp A, Fuchs S. The role of myeloid early endothelial progenitor cells in bone formation and osteoclast differentiation in tissue construct based on hydroxyapatite poly(ester-urethane) scaffolds. Journal of Orthopaedic Research : Official Publication of the Orthopaedic Research Society. PMID 26945676 DOI: 10.1002/jor.23222  0.107
2020 Sun Q, Bai X, Sofias AM, van der Meel R, Ruiz-Hernandez E, Storm G, Hennink WE, De Geest B, Kiessling F, Yu HJ, Lammers T, Shi Y. Cancer nanomedicine meets immunotherapy: opportunities and challenges. Acta Pharmacologica Sinica. PMID 32555445 DOI: 10.1038/s41401-020-0448-9  0.106
2022 Cai X, Shi Y, Dai Y, Wang F, Chen X, Li X. Baicalin clears inflammation by enhancing macrophage efferocytosis via inhibition of RhoA/ROCK signaling pathway and regulating macrophage polarization. International Immunopharmacology. 105: 108532. PMID 35101850 DOI: 10.1016/j.intimp.2022.108532  0.106
2022 Gao C, Liang Y, Jiang Y, Paez-Espino D, Han M, Gu C, Wang M, Yang Y, Liu F, Yang Q, Gong Z, Zhang X, Luo Z, He H, Guo C, ... ... Shi Y, et al. Virioplankton assemblages from challenger deep, the deepest place in the oceans. Iscience. 25: 104680. PMID 35942087 DOI: 10.1016/j.isci.2022.104680  0.105
2022 Shi J, Shi Y, Li JC, Wei W, Chen Y, Cheng P, Liu CL, Zhang H, Wu R, Zhang B, Jiao RH, Yu S, Liang Y, Tan RX, Ge HM. Reconstitution of Cinnamoyl Moiety Reveals Two Distinct Cyclases for Benzene Ring Formation. Journal of the American Chemical Society. PMID 35470672 DOI: 10.1021/jacs.2c02855  0.105
2014 Malik R, Patel L, Prensner JR, Shi Y, Iyer MK, Subramaniyan S, Carley A, Niknafs YS, Sahu A, Han S, Ma T, Liu M, Asangani IA, Jing X, Cao X, et al. The lncRNA PCAT29 inhibits oncogenic phenotypes in prostate cancer. Molecular Cancer Research : McR. 12: 1081-7. PMID 25030374 DOI: 10.1158/1541-7786.MCR-14-0257  0.105
2023 Pan BW, Zheng LL, Shi Y, Dong ZC, Feng TT, Yang J, Wei Y, Zhou Y. Synthesis and Antiviral and Antitumor Activities of Novel 18-Glycyrrhetinic Acid Derivatives. International Journal of Molecular Sciences. 24. PMID 37834459 DOI: 10.3390/ijms241915012  0.104
2017 Cai Y, Shen H, Zhan J, Lin M, Dai L, Ren C, Shi Y, Liu J, Gao J, Yang Z. Supramolecular 'Trojan Horse' for Nuclear Delivery of Dual Anticancer Drugs. Journal of the American Chemical Society. PMID 28191948 DOI: 10.1021/Jacs.6B12322  0.104
2021 Marios Sofias A, De Lorenzi F, Peña Q, Azadkhah Shalmani A, Vucur M, Wang JW, Kiessling F, Shi Y, Consolino L, Storm G, Lammers T. Therapeutic and diagnostic targeting of fibrosis in metabolic, proliferative and viral disorders. Advanced Drug Delivery Reviews. 113831. PMID 34139255 DOI: 10.1016/j.addr.2021.113831  0.104
2022 Lan Y, Xie H, Jin Q, Zhao X, Shi Y, Zhou Y, Hu Z, Ye Y, Huang X, Sun Y, Chen Z, Xie Z. Extracellular vesicles derived from neural EGFL-Like 1-modified mesenchymal stem cells improve acellular bone regeneration via the miR-25-5p-SMAD2 signaling axis. Bioactive Materials. 17: 457-470. PMID 35386450 DOI: 10.1016/j.bioactmat.2022.01.019  0.104
2022 Shi Q, Shen Q, Liu Y, Shi Y, Huang W, Wang X, Li Z, Chai Y, Wang H, Hu X, Li N, Zhang Q, Cao X. Increased glucose metabolism in TAMs fuels O-GlcNAcylation of lysosomal Cathepsin B to promote cancer metastasis and chemoresistance. Cancer Cell. PMID 36084651 DOI: 10.1016/j.ccell.2022.08.012  0.104
2021 Chuanshan Z, Wang H, Jing L, Hou X, Li L, Wang W, Shi Y, Li D, Li L, Zhao Z, Li L, Aji T, Lin R, Shao Y, Vuitton DA, et al. Involvement of TIGIT in NK Cell Exhaustion and Immune Escape in Patients and Mouse Model with Liver E. multilocularis Infection. Hepatology (Baltimore, Md.). PMID 34192365 DOI: 10.1002/hep.32035  0.103
2022 Roemhild K, Besse HC, Wang B, Peña Q, Sun Q, Omata D, Ozbakir B, Bos C, Scheeren HW, Storm G, Metselaar JM, Yu H, Knüchel-Clarke R, Kiessling F, Moonen CTW, ... ... Shi Y, et al. Ultrasound-directed enzyme-prodrug therapy (UDEPT) using self-immolative doxorubicin derivatives. Theranostics. 12: 4791-4801. PMID 35832083 DOI: 10.7150/thno.69168  0.102
2023 Shi Y, Jiang W, Li M, Jiang N, Huang Y, Wang M, Du Z, Chen J, Li J, Wu L, Zhong M, Yang J, Huang J. Metallochaperone protein OsHIPP17 regulates the absorption and translocation of cadmium in rice (Oryza sativa L.). International Journal of Biological Macromolecules. 245: 125607. PMID 37390996 DOI: 10.1016/j.ijbiomac.2023.125607  0.102
2020 Eskandari M, Shi Y, Liu J, Albanese J, Goel S, Verma A, Wang Y. The expression of MDM2, MDM4, p53 and p21 in myeloid neoplasms and the effect of MDM2/MDM4 dual inhibitor. Leukemia & Lymphoma. 1-9. PMID 32924682 DOI: 10.1080/10428194.2020.1817441  0.102
2019 Huang J, Hu X, Zhao Y, Shi Y, Ding H, Wu R, Zhao Z, Ji J. Comparative analysis of expression in Tn transposons and the Tn-Tn chimaera. Antimicrobial Agents and Chemotherapy. PMID 30833426 DOI: 10.1128/AAC.02434-18  0.101
2021 Tang X, Zhang Y, Liu X, Li X, Zhao H, Cui H, Shi Y, Chen Y, Xu H, Meng Z, Zhao L, Chen H, Wang Z, Zhu M, Lin Y, et al. Aloe-emodin derivative produces anti-atherosclerosis effect by reinforcing AMBRA1-mediated endothelial autophagy. European Journal of Pharmacology. 174641. PMID 34800465 DOI: 10.1016/j.ejphar.2021.174641  0.101
2015 Wang X, Lu M, Shi Y, Ou Y, Cheng X. Discovery of novel new Delhi metallo-β-lactamases-1 inhibitors by multistep virtual screening. Plos One. 10: e0118290. PMID 25734558 DOI: 10.1371/journal.pone.0118290  0.101
2014 Shi Y, Liu C, Liu X, Tang DG, Wang J. The microRNA miR-34a inhibits non-small cell lung cancer (NSCLC) growth and the CD44hi stem-like NSCLC cells. Plos One. 9: e90022. PMID 24595209 DOI: 10.1371/Journal.Pone.0090022  0.101
2021 Thakkar A, Cui Z, Peeke SZ, Shah N, Pradhan K, Lombardo A, Khatun F, Mustafa J, De Castro A, Gillick K, Joseph F, Naik A, Rahman S, D'Aiello A, Elkind R, ... ... Shi Y, et al. Patterns of leukocyte recovery predict infectious complications after CD19 CAR-T cell therapy in a real-world setting. Stem Cell Investigation. 8: 18. PMID 34631871 DOI: 10.21037/sci-2021-008  0.1
2020 Liang C, Bai X, Qi C, Sun Q, Han X, Lan T, Zhang H, Zheng X, Liang R, Jiao J, Zheng Z, Fang J, Lei P, Wang Y, Möckel D, ... ... Shi Y, et al. Π electron-stabilized polymeric micelles potentiate docetaxel therapy in advanced-stage gastrointestinal cancer. Biomaterials. 266: 120432. PMID 33069116 DOI: 10.1016/j.biomaterials.2020.120432  0.1
2016 Sun W, Motta A, Shi Y, Seekamp A, Schmidt H, Gorb SN, Migliaresi C, Fuchs S. Co-culture of outgrowth endothelial cells with human mesenchymal stem cells in silk fibroin hydrogels promotes angiogenesis. Biomedical Materials (Bristol, England). 11: 035009. PMID 27271291 DOI: 10.1088/1748-6041/11/3/035009  0.1
2022 Zhai L, Jiang Y, Shi Y, Lv M, Pu YL, Cheng HL, Zhu JY, Yang KW. Aromatic Schiff bases confer inhibitory efficacy against New Delhi metallo-β-lactamase-1 (NDM-1). Bioorganic Chemistry. 126: 105910. PMID 35653899 DOI: 10.1016/j.bioorg.2022.105910  0.099
2018 Lin J, Chen L, Jiang W, Zhang H, Shi Y, Cai W. Rapid detection of low-level HeLa cell contamination in cell culture using nested PCR. Journal of Cellular and Molecular Medicine. PMID 30353657 DOI: 10.1111/jcmm.13923  0.099
2018 Sun Q, Barz M, De Geest BG, Diken M, Hennink WE, Kiessling F, Lammers T, Shi Y. Nanomedicine and macroscale materials in immuno-oncology. Chemical Society Reviews. PMID 30465669 DOI: 10.1039/c8cs00473k  0.099
2021 Shi Y, Andhey PS, Ising C, Wang K, Snipes LL, Boyer K, Lawson S, Yamada K, Qin W, Manis M, Serrano JR, Benitez BA, Schmidt RE, Artyomov M, Ulrich JD, et al. Overexpressing low-density lipoprotein receptor reduces tau-associated neurodegeneration in relation to apoE-linked mechanisms. Neuron. PMID 34157306 DOI: 10.1016/j.neuron.2021.05.034  0.098
2018 Marks E, Wang Y, Shi Y, Susa J, Jacobson M, Goldstein DY. Specific TCR gene rearrangements in mycosis fungoides: does advanced clinical stage show a preference? Journal of Clinical Pathology. PMID 30171087 DOI: 10.1136/jclinpath-2018-205324  0.098
2023 Xin J, Shi Y, Zhang X, Yuan X, Xin Y, He H, Shen J, Blankenship RE, Xu X. Carotenoid assembly regulates quinone diffusion and the reaction center-light harvesting complex architecture. Elife. 12. PMID 37737710 DOI: 10.7554/eLife.88951  0.098
2023 Sun X, Liang X, Wang Y, Ma P, Xiong W, Qian S, Cui Y, Zhang H, Chen X, Tian F, Shi Y, Zheng F, Li L. A tumor microenvironment-activatable nanoplatform with phycocyanin-assisted in-situ nanoagent generation for synergistic treatment of colorectal cancer. Biomaterials. 301: 122263. PMID 37549506 DOI: 10.1016/j.biomaterials.2023.122263  0.097
2014 Dithmer M, Fuchs S, Shi Y, Schmidt H, Richert E, Roider J, Klettner A. Fucoidan reduces secretion and expression of vascular endothelial growth factor in the retinal pigment epithelium and reduces angiogenesis in vitro. Plos One. 9: e89150. PMID 24558482 DOI: 10.1371/journal.pone.0089150  0.097
2023 Hu Q, Hu X, Shi Y, Liang L, Zhu J, Zhao S, Wang Y, Wu Z, Wang F, Zhou F, Yang Y. Heterogeneous tissue construction by on-demand bubble-assisted acoustic patterning. Lab On a Chip. PMID 37006165 DOI: 10.1039/d3lc00122a  0.096
2008 Huang CM, Nakatsuji T, Liu YT, Shi Y. In vivo tumor secretion probing via ultrafiltration and tissue chamber: implication for anti-cancer drugs targeting secretome. Recent Patents On Anti-Cancer Drug Discovery. 3: 48-54. PMID 18289123 DOI: 10.2174/157489208783478694  0.096
2020 Xiong HL, Wu YT, Cao JL, Yang R, Liu YX, Ma J, Qiao XY, Yao XY, Zhang BH, Zhang YL, Hou WH, Shi Y, Xu JJ, Zhang L, Wang SJ, et al. Robust neutralization assay based on SARS-CoV-2 S-protein-bearing vesicular stomatitis virus (VSV) pseudovirus and ACE2-overexpressing BHK21 cells. Emerging Microbes & Infections. 1-38. PMID 32893735 DOI: 10.1080/22221751.2020.1815589  0.095
2022 Wang L, Tang XQ, Shi Y, Li HM, Meng ZY, Chen H, Li XH, Chen YC, Liu H, Hong Y, Xu HH, Liu L, Zhao L, Han WN, Liu X, et al. Tetrahydroberberrubine retards heart aging in mice by promoting PHB2-mediated mitophagy. Acta Pharmacologica Sinica. PMID 35948750 DOI: 10.1038/s41401-022-00956-w  0.095
2019 Yao B, He J, Yin X, Shi Y, Wan J, Tian Z. The protective effect of lithocholic acid on the intestinal epithelial barrier is mediated by the vitamin D receptor via a SIRT1/Nrf2 and NF-κB dependent mechanism in Caco-2 cells. Toxicology Letters. PMID 31472180 DOI: 10.1016/j.toxlet.2019.08.024  0.095
2019 Duan M, Goswami S, Shi JY, Wu LJ, Wang XY, Ma JQ, Zhang Z, Shi Y, Ma LJ, Zhang S, Xi R, Cao Y, Zhou J, Fan J, Zhang XM, et al. Activated and Exhausted MAIT Cells Foster Disease Progression and Indicate Poor Outcome in Hepatocellular Carcinoma. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 30723143 DOI: 10.1158/1078-0432.Ccr-18-3040  0.094
2022 Lu Z, Yang S, Luo X, Shi Y, Lee JS, Deva S, Liu T, Chao Y, Zhang Y, Huang R, Xu Y, Shen Z, Shen L. The combination of gene hyperamplification and PD-L1 expression as a biomarker for the clinical benefit of tislelizumab in gastric/gastroesophageal junction adenocarcinoma. Gastric Cancer : Official Journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association. PMID 35778636 DOI: 10.1007/s10120-022-01308-7  0.094
2013 Shi Y, Hu S, Song Q, Yu S, Zhou X, Yin J, Qin L, Qian H. Gene silencing of 4-1BB by RNA interference inhibits acute rejection in rats with liver transplantation. Biomed Research International. 2013: 192738. PMID 23484089 DOI: 10.1155/2013/192738  0.094
2020 Shi Y, van der Meel R, Chen X, Lammers T. The EPR effect and beyond: Strategies to improve tumor targeting and cancer nanomedicine treatment efficacy. Theranostics. 10: 7921-7924. PMID 32685029 DOI: 10.7150/thno.49577  0.094
2015 Xu X, Yu T, Xu R, Shi Y, Lin X, Xu Q, Qi X, Weng Y, Chen X. Fine mapping of a dominantly inherited powdery mildew resistance major-effect QTL, Pm1.1, in cucumber identifies a 41.1 kb region containing two tandemly arrayed cysteine-rich receptor-like protein kinase genes. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 26660669 DOI: 10.1007/s00122-015-2644-4  0.094
2019 Ma C, Wen B, Zhang Q, Shao PP, Gu W, Qu K, Shi Y, Wang B. Emodin induces apoptosis and autophagy of fibroblasts obtained from patient with ankylosing spondylitis. Drug Design, Development and Therapy. 13: 601-609. PMID 30809091 DOI: 10.2147/DDDT.S182087  0.093
2021 Shi Y. PLAN B for immunotherapy: Promoting and leveraging anti-tumor B cell immunity. Journal of Controlled Release : Official Journal of the Controlled Release Society. PMID 34563591 DOI: 10.1016/j.jconrel.2021.09.028  0.093
2023 Wang B, Cui H, Kiessling F, Lammers T, Baumjohann D, Shi Y. Targeting intracellular and extracellular receptors with nano-to-macroscale biomaterials to activate immune cells. Journal of Controlled Release : Official Journal of the Controlled Release Society. 357: 52-66. PMID 36958399 DOI: 10.1016/j.jconrel.2023.03.028  0.093
2024 Chen G, Guo Z, Shu Y, Zhao Y, Qiu L, Duan S, Lin Y, He S, Li X, Feng X, Xiang G, Nian B, Wang Y, Li Z, Yang C, ... Shi Y, et al. Biosynthetic pathway of prescription cucurbitacin IIa and high-level production of key triterpenoid intermediates in engineered yeast and tobacco. Plant Communications. 100835. PMID 38425040 DOI: 10.1016/j.xplc.2024.100835  0.092
2015 Louage B, Zhang Q, Vanparijs N, Voorhaar L, Vande Casteele S, Shi Y, Hennink WE, Van Bocxlaer J, Hoogenboom R, De Geest BG. Degradable ketal-based block copolymer nanoparticles for anticancer drug delivery: a systematic evaluation. Biomacromolecules. 16: 336-50. PMID 25490543 DOI: 10.1021/Bm5015409  0.092
2023 Shi Y, Jing B, Xi R. Comprehensive analysis of neoantigens derived from structural variation across whole genomes from 2528 tumors. Genome Biology. 24: 169. PMID 37461029 DOI: 10.1186/s13059-023-03005-9  0.091
2020 Wang B, Van Herck S, Chen Y, Bai X, Zhong Z, De Swarte K, Lambrecht BN, Sanders NN, Lienenklaus S, Scheeren HW, David SA, Kiessling F, Lammers T, De Geest BG, Shi Y. Prolonged innate immune activation by enzyme-sensitive imidazoquinoline TLR7/8 agonist prodrug vesicles. Journal of the American Chemical Society. PMID 32524819 DOI: 10.1021/Jacs.0C01928  0.091
2020 Xin H, Zhao N, Wang Y, Zhao X, Pan T, Shi Y, Li B. Optically Controlled Living Micromotors for the Manipulation and Disruption of Biological Targets. Nano Letters. PMID 32935992 DOI: 10.1021/acs.nanolett.0c02501  0.091
2020 Qu J, Ji Z, Shi Y. The Graphical Conditions for Controllability of Multiagent Systems Under Equitable Partition. Ieee Transactions On Cybernetics. PMID 32749989 DOI: 10.1109/TCYB.2020.3004851  0.09
2010 Zhou LL, Xu WL, Qin RJ, Tang HR, Shen HL, Shi Y. [The nuclear localization of Y-box binding protein-1 correlates with P-glycoprotein expression in diffuse large B cell lymphoma]. Zhonghua Bing Li Xue Za Zhi = Chinese Journal of Pathology. 36: 329-30. PMID 17706141  0.09
2006 Moeller ML, Shi Y, Reichardt LF, Ethell IM. EphB receptors regulate dendritic spine morphogenesis through the recruitment/phosphorylation of focal adhesion kinase and RhoA activation. The Journal of Biological Chemistry. 281: 1587-98. PMID 16298995 DOI: 10.1074/Jbc.M511756200  0.089
2020 Liu C, Yang Z, Cai M, Shi Y, Cui H, Yuan J. Generation of Plasmodium yoelii malaria parasite for conditional degradation of proteins. Molecular and Biochemical Parasitology. 111346. PMID 33307135 DOI: 10.1016/j.molbiopara.2020.111346  0.089
2019 Hu P, Fang D, Shen L, Zhou H, Shao R, Chen M, Yao C, Shi Y, Chen Q. Fibrin matrix containing high-dose calcitriol promotes the apoptosis of gastric cancer cells by sustainably releasing calcitrol and D-dimer. Journal of Biomaterials Applications. 885328219856248. PMID 31195918 DOI: 10.1177/0885328219856248  0.089
2022 Zhang Y, Wei M, Wu Y, Wang J, Hong Y, Huang Y, Yuan L, Ma J, Wang K, Wang S, Shi Y, Wang Z, Guo H, Xiao J, Yang C, et al. Cross-species tropism and antigenic landscapes of circulating SARS-CoV-2 variants. Cell Reports. 110558. PMID 35303476 DOI: 10.1016/j.celrep.2022.110558  0.088
2020 Wong MY, Lewis M, Doherty JJ, Shi Y, Cashikar AG, Amelianchik A, Tymchuk S, Sullivan PM, Qian M, Covey DF, Petsko GA, Holtzman DM, Paul SM, Luo W. 25-Hydroxycholesterol amplifies microglial IL-1β production in an apoE isoform-dependent manner. Journal of Neuroinflammation. 17: 192. PMID 32552741 DOI: 10.1186/S12974-020-01869-3  0.088
2024 Li X, Wang Q, Liu L, Shi Y, Hong Y, Xu W, Xu H, Feng J, Xie M, Li Y, Yang B, Zhang Y. The Therapeutic Potential of Four Main Compounds of (Roxb.) DC: A Comprehensive Study on Biological Processes, Anti-Inflammatory Effects, and Myocardial Toxicity. Pharmaceuticals (Basel, Switzerland). 17. PMID 38675484 DOI: 10.3390/ph17040524  0.088
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