| Year |
Citation |
Score |
| 2022 |
Kettenburg G, Kistler A, Ranaivoson HC, Ahyong V, Andrianiaina A, Andry S, DeRisi JL, Gentles A, Raharinosy V, Randriambolamanantsoa TH, Ravelomanantsoa NAF, Tato CM, Dussart P, Heraud JM, Brook CE. Full Genome Sequences From Malagasy Fruit Bats Define a Unique Evolutionary History for This Coronavirus Clade. Frontiers in Public Health. 10: 786060. PMID 35223729 DOI: 10.3389/fpubh.2022.786060 |
0.309 |
|
| 2021 |
Gu W, Talevich E, Hsu E, Qi Z, Urisman A, Federman S, Gopez A, Arevalo S, Gottschall M, Liao L, Tung J, Chen L, Lim H, Ho C, Kasowski M, ... ... DeRisi JL, et al. Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids. Genome Medicine. 13: 98. PMID 34074327 DOI: 10.1186/s13073-021-00912-z |
0.634 |
|
| 2019 |
DeRisi JL, Huber G, Kistler A, Retallack H, Wilkinson M, Yllanes D. An exploration of ambigrammatic sequences in narnaviruses. Scientific Reports. 9: 17982. PMID 31784609 DOI: 10.1038/S41598-019-54181-3 |
0.538 |
|
| 2017 |
Hanna ZR, Henderson JB, Wall JD, Emerling CA, Fuchs J, Runckel C, Mindell DP, Bowie RCK, DeRisi JL, Dumbacher JP. Northern Spotted Owl (Strix occidentalis caurina) Genome: Divergence with the Barred Owl (Strix varia) and Characterization of Light-Associated Genes. Genome Biology and Evolution. 9: 2522-2545. PMID 28992302 DOI: 10.1093/Gbe/Evx158 |
0.795 |
|
| 2017 |
Sonoiki E, Ng CL, Lee MC, Guo D, Zhang YK, Zhou Y, Alley MR, Ahyong V, Sanz LM, Lafuente-Monasterio MJ, Dong C, Schupp PG, Gut J, Legac J, Cooper RA, ... ... DeRisi J, et al. A potent antimalarial benzoxaborole targets a Plasmodium falciparum cleavage and polyadenylation specificity factor homologue. Nature Communications. 8: 14574. PMID 28262680 DOI: 10.1038/Ncomms14574 |
0.312 |
|
| 2017 |
Medina GN, Knudsen GM, Greninger AL, Kloc A, Díaz-San Segundo F, Rieder E, Grubman MJ, DeRisi JL, de Los Santos T. Interaction between FMDV L(pro) and transcription factor ADNP is required for optimal viral replication. Virology. 505: 12-22. PMID 28219017 DOI: 10.1016/J.Virol.2017.02.010 |
0.466 |
|
| 2017 |
Slabodnick MM, Ruby JG, Reiff SB, Swart EC, Gosai S, Prabakaran S, Witkowska E, Larue GE, Fisher S, Freeman RM, Gunawardena J, Chu W, Stover NA, Gregory BD, Nowacki M, ... Derisi J, et al. The Macronuclear Genome of Stentor coeruleus Reveals Tiny Introns in a Giant Cell. Current Biology : Cb. PMID 28190732 DOI: 10.1016/J.Cub.2016.12.057 |
0.362 |
|
| 2016 |
Greene TT, Tokuyama M, Knudsen GM, Kunz M, Lin J, Greninger AL, DeFilippis VR, DeRisi JL, Raulet DH, Coscoy L. A Herpesviral induction of RAE-1 NKG2D ligand expression occurs through release of HDAC mediated repression. Elife. 5. PMID 27874833 DOI: 10.7554/Elife.14749 |
0.431 |
|
| 2016 |
Sonoiki E, Nsanzabana C, Legac J, Sindhe KM, DeRisi J, Rosenthal PJ. Altered Plasmodium falciparum sensitivity to the antiretroviral protease inhibitor lopinavir associated with polymorphisms in pfmdr1. Antimicrobial Agents and Chemotherapy. PMID 27821443 DOI: 10.1128/Aac.01949-16 |
0.304 |
|
| 2016 |
Van Voorhis WC, Adams JH, Adelfio R, Ahyong V, Akabas MH, Alano P, Alday A, Alemán Resto Y, Alsibaee A, Alzualde A, Andrews KT, Avery SV, Avery VM, Ayong L, Baker M, ... ... DeRisi JL, et al. Open Source Drug Discovery with the Malaria Box Compound Collection for Neglected Diseases and Beyond. Plos Pathogens. 12: e1005763. PMID 27467575 DOI: 10.1371/Journal.Ppat.1005763 |
0.623 |
|
| 2016 |
Sonoiki E, Palencia A, Guo D, Ahyong V, Dong C, Li X, Hernandez VS, Zhang YK, Choi W, Gut J, Legac J, Cooper R, Alley MR, Freund YR, DeRisi J, et al. Anti-malarial benzoxaboroles target P. falciparum leucyl-tRNA synthetase. Antimicrobial Agents and Chemotherapy. PMID 27270277 DOI: 10.1128/Aac.00820-16 |
0.324 |
|
| 2015 |
Soupene E, Kao J, Cheng DH, Wang D, Greninger AL, Knudsen GM, DeRisi JL, Kuypers FA. Association of NMT2 with the acyl-CoA carrier ACBD6 protects the N-myristoyltransferase reaction from palmitoyl-CoA. Journal of Lipid Research. PMID 26621918 DOI: 10.1194/Jlr.M065003 |
0.4 |
|
| 2015 |
Hanna ZR, Runckel C, Fuchs J, DeRisi JL, Mindell DP, Van Hemert C, Handel CM, Dumbacher JP. Isolation of a Complete Circular Virus Genome Sequence from an Alaskan Black-Capped Chickadee (Poecile atricapillus) Gastrointestinal Tract Sample. Genome Announcements. 3. PMID 26404604 DOI: 10.1128/Genomea.01081-15 |
0.799 |
|
| 2015 |
Greninger AL, DeRisi JL. Draft Genome Sequence of Laverivirus UC1, a Dicistrovirus-Like RNA Virus Featuring an Unusual Genome Organization. Genome Announcements. 3. PMID 26139710 DOI: 10.1128/Genomea.00656-15 |
0.528 |
|
| 2015 |
Greninger AL, DeRisi JL. Draft Genome Sequence of Tombunodavirus UC1. Genome Announcements. 3. PMID 26139709 DOI: 10.1128/Genomea.00655-15 |
0.521 |
|
| 2015 |
Greninger AL, DeRisi JL. Draft Genome Sequence of Picalivirus D Recovered from San Francisco Wastewater. Genome Announcements. 3. PMID 26139708 DOI: 10.1128/Genomea.00654-15 |
0.504 |
|
| 2015 |
Greninger AL, DeRisi JL. Draft Genome Sequences of Leviviridae RNA Phages EC and MB Recovered from San Francisco Wastewater. Genome Announcements. 3. PMID 26112785 DOI: 10.1128/Genomea.00652-15 |
0.53 |
|
| 2015 |
Greninger AL, DeRisi JL. Draft Genome Sequences of Ciliovirus and Brinovirus from San Francisco Wastewater. Genome Announcements. 3. PMID 26112784 DOI: 10.1128/Genomea.00651-15 |
0.536 |
|
| 2015 |
Greninger AL, DeRisi JL. Draft Genome Sequences of Marine RNA Viruses SF-1, SF-2, and SF-3 Recovered from San Francisco Wastewater. Genome Announcements. 3. PMID 26089423 DOI: 10.1128/Genomea.00653-15 |
0.523 |
|
| 2015 |
Gerver RE, Gómez-Sjöberg R, Baxter BC, Thorn KS, Fordyce PM, Diaz-Botia CA, Helms BA, DeRisi JL. Correction: Programmable microfluidic synthesis of spectrally encoded microspheres. Lab On a Chip. 15: 1213. PMID 26038840 DOI: 10.1039/c5lc90018b |
0.555 |
|
| 2015 |
Gerver RE, Gómez-Sjöberg R, Baxter BC, Thorn KS, Fordyce PM, Diaz-Botia CA, Helms BA, DeRisi JL. Correction: Programmable microfluidic synthesis of spectrally encoded microspheres. Lab On a Chip. 15: 1213. PMID 25619960 DOI: 10.1039/C5Lc90018B |
0.547 |
|
| 2014 |
Jiménez-Díaz MB, Ebert D, Salinas Y, Pradhan A, Lehane AM, Myrand-Lapierre ME, O'Loughlin KG, Shackleford DM, Justino de Almeida M, Carrillo AK, Clark JA, Dennis AS, Diep J, Deng X, Duffy S, ... ... DeRisi JL, et al. (+)-SJ733, a clinical candidate for malaria that acts through ATP4 to induce rapid host-mediated clearance of Plasmodium. Proceedings of the National Academy of Sciences of the United States of America. 111: E5455-62. PMID 25453091 DOI: 10.1073/Pnas.1414221111 |
0.451 |
|
| 2014 |
Skewes-Cox P, Sharpton TJ, Pollard KS, DeRisi JL. Profile hidden Markov models for the detection of viruses within metagenomic sequence data. Plos One. 9: e105067. PMID 25140992 DOI: 10.1371/Journal.Pone.0105067 |
0.312 |
|
| 2014 |
Li R, Faden DL, Fakhry C, Langelier C, Jiao Y, Wang Y, Wilkerson MD, Pedamallu CS, Old M, Lang J, Loyo M, Ahn SM, Tan M, Gooi Z, Chan J, ... ... DeRisi JL, et al. Clinical, genomic, and metagenomic characterization of oral tongue squamous cell carcinoma in patients who do not smoke. Head & Neck. PMID 24954188 DOI: 10.1002/Hed.23807 |
0.351 |
|
| 2014 |
Naccache SN, Federman S, Veeraraghavan N, Zaharia M, Lee D, Samayoa E, Bouquet J, Greninger AL, Luk KC, Enge B, Wadford DA, Messenger SL, Genrich GL, Pellegrino K, Grard G, ... ... DeRisi JL, et al. A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples. Genome Research. 24: 1180-92. PMID 24899342 DOI: 10.1101/Gr.171934.113 |
0.484 |
|
| 2014 |
Pérez JC, Fordyce PM, Lohse MB, Hanson-Smith V, DeRisi JL, Johnson AD. How duplicated transcription regulators can diversify to govern the expression of nonoverlapping sets of genes. Genes & Development. 28: 1272-7. PMID 24874988 DOI: 10.1101/Gad.242271.114 |
0.629 |
|
| 2014 |
Runckel C, DeRisi J, Flenniken ML. A draft genome of the honey bee trypanosomatid parasite Crithidia mellificae. Plos One. 9: e95057. PMID 24743507 DOI: 10.1371/Journal.Pone.0095057 |
0.794 |
|
| 2014 |
Szentiks CA, Tsangaras K, Abendroth B, Scheuch M, Stenglein MD, Wohlsein P, Heeger F, Höveler R, Chen W, Sun W, Damiani A, Nikolin V, Gruber AD, Grobbel M, Kalthoff D, ... ... Derisi J, et al. Polar bear encephalitis: establishment of a comprehensive next-generation pathogen analysis pipeline for captive and free-living wildlife. Journal of Comparative Pathology. 150: 474-88. PMID 24534459 DOI: 10.1016/J.Jcpa.2013.12.005 |
0.331 |
|
| 2013 |
Stewart-Ornstein J, Nelson C, DeRisi J, Weissman JS, El-Samad H. Msn2 coordinates a stoichiometric gene expression program. Current Biology : Cb. 23: 2336-45. PMID 24210615 DOI: 10.1016/J.Cub.2013.09.043 |
0.354 |
|
| 2013 |
Hernday AD, Lohse MB, Fordyce PM, Nobile CJ, DeRisi JL, Johnson AD. Structure of the transcriptional network controlling white-opaque switching in Candida albicans. Molecular Microbiology. 90: 22-35. PMID 23855748 DOI: 10.1111/Mmi.12329 |
0.605 |
|
| 2013 |
Guler JL, Freeman DL, Ahyong V, Patrapuvich R, White J, Gujjar R, Phillips MA, DeRisi J, Rathod PK. Asexual populations of the human malaria parasite, Plasmodium falciparum, use a two-step genomic strategy to acquire accurate, beneficial DNA amplifications. Plos Pathogens. 9: e1003375. PMID 23717205 DOI: 10.1371/Journal.Ppat.1003375 |
0.354 |
|
| 2013 |
Nelson CS, Fuller CK, Fordyce PM, Greninger AL, Li H, DeRisi JL. Microfluidic affinity and ChIP-seq analyses converge on a conserved FOXP2-binding motif in chimp and human, which enables the detection of evolutionarily novel targets. Nucleic Acids Research. 41: 5991-6004. PMID 23625967 DOI: 10.1093/Nar/Gkt259 |
0.682 |
|
| 2013 |
Lohse MB, Hernday AD, Fordyce PM, Noiman L, Sorrells TR, Hanson-Smith V, Nobile CJ, DeRisi JL, Johnson AD. Identification and characterization of a previously undescribed family of sequence-specific DNA-binding domains. Proceedings of the National Academy of Sciences of the United States of America. 110: 7660-5. PMID 23610392 DOI: 10.1073/Pnas.1221734110 |
0.652 |
|
| 2013 |
Greninger AL, Knudsen GM, Betegon M, Burlingame AL, DeRisi JL. ACBD3 interaction with TBC1 domain 22 protein is differentially affected by enteroviral and kobuviral 3A protein binding. Mbio. 4: e00098-13. PMID 23572552 DOI: 10.1128/Mbio.00098-13 |
0.447 |
|
| 2013 |
Runckel C, Westesson O, Andino R, DeRisi JL. Identification and manipulation of the molecular determinants influencing poliovirus recombination. Plos Pathogens. 9: e1003164. PMID 23408891 DOI: 10.1371/Journal.Ppat.1003164 |
0.799 |
|
| 2012 |
Yu G, Greninger AL, Isa P, Phan TG, MartÃnez MA, de la Luz Sanchez M, Contreras JF, Santos-Preciado JI, Parsonnet J, Miller S, DeRisi JL, Delwart E, Arias CF, Chiu CY. Discovery of a novel polyomavirus in acute diarrheal samples from children. Plos One. 7: e49449. PMID 23166671 DOI: 10.1371/Journal.Pone.0049449 |
0.508 |
|
| 2012 |
Fordyce PM, Pincus D, Kimmig P, Nelson CS, El-Samad H, Walter P, DeRisi JL. Basic leucine zipper transcription factor Hac1 binds DNA in two distinct modes as revealed by microfluidic analyses. Proceedings of the National Academy of Sciences of the United States of America. 109: E3084-93. PMID 23054834 DOI: 10.1073/Pnas.1212457109 |
0.628 |
|
| 2012 |
Gerver RE, Gómez-Sjöberg R, Baxter BC, Thorn KS, Fordyce PM, Diaz-Botia CA, Helms BA, DeRisi JL. Programmable microfluidic synthesis of spectrally encoded microspheres. Lab On a Chip. 12: 4716-23. PMID 23042484 DOI: 10.1039/C2Lc40699C |
0.585 |
|
| 2012 |
Lee D, Das Gupta J, Gaughan C, Steffen I, Tang N, Luk KC, Qiu X, Urisman A, Fischer N, Molinaro R, Broz M, Schochetman G, Klein EA, Ganem D, Derisi JL, et al. In-depth investigation of archival and prospectively collected samples reveals no evidence for XMRV infection in prostate cancer. Plos One. 7: e44954. PMID 23028701 DOI: 10.1371/Journal.Pone.0044954 |
0.605 |
|
| 2012 |
Urisman A, Molinaro RJ, Fischer N, Plummer SJ, Casey G, Klein EA, Malathi K, Magi-Galluzzi C, Tubbs RR, Ganem D, Silverman RH, DeRisi JL. Retraction. Identification of a novel gammaretrovirus in prostate tumors of patients homozygous for R462Q RNASEL variant. Plos Pathogens. 8. PMID 23028303 DOI: 10.1371/annotation/7e2efc01-2e9b-4e9b-aef0-87ab0e4e4732 |
0.562 |
|
| 2012 |
O'Donoghue AJ, Eroy-Reveles AA, Knudsen GM, Ingram J, Zhou M, Statnekov JB, Greninger AL, Hostetter DR, Qu G, Maltby DA, Anderson MO, Derisi JL, McKerrow JH, Burlingame AL, Craik CS. Global identification of peptidase specificity by multiplex substrate profiling. Nature Methods. 9: 1095-100. PMID 23023596 DOI: 10.1038/Nmeth.2182 |
0.462 |
|
| 2012 |
Fordyce PM, Diaz-Botia CA, DeRisi JL, Gomez-Sjoberg R. Systematic characterization of feature dimensions and closing pressures for microfluidic valves produced via photoresist reflow. Lab On a Chip. 12: 4287-95. PMID 22930180 DOI: 10.1039/c2lc40414a |
0.551 |
|
| 2012 |
Lowes D, Pradhan A, Iyer LV, Parman T, Gow J, Zhu F, Furimsky A, Lemoff A, Guiguemde WA, Sigal M, Clark JA, Wilson E, Tang L, Connelly MC, Derisi JL, et al. Lead optimization of antimalarial propafenone analogues. Journal of Medicinal Chemistry. 55: 6087-93. PMID 22708838 DOI: 10.1021/Jm300286A |
0.401 |
|
| 2012 |
Greninger AL, Knudsen GM, Betegon M, Burlingame AL, Derisi JL. The 3A protein from multiple picornaviruses utilizes the golgi adaptor protein ACBD3 to recruit PI4KIIIβ. Journal of Virology. 86: 3605-16. PMID 22258260 DOI: 10.1128/Jvi.06778-11 |
0.428 |
|
| 2012 |
Core A, Runckel C, Ivers J, Quock C, Siapno T, Denault S, Brown B, Derisi J, Smith CD, Hafernik J. A new threat to honey bees, the parasitic phorid fly Apocephalus borealis. Plos One. 7: e29639. PMID 22235317 DOI: 10.1371/Journal.Pone.0029639 |
0.772 |
|
| 2011 |
Anderson CM, Chen SY, Dimon MT, Oke A, DeRisi JL, Fung JC. ReCombine: a suite of programs for detection and analysis of meiotic recombination in whole-genome datasets. Plos One. 6: e25509. PMID 22046241 DOI: 10.1371/Journal.Pone.0025509 |
0.645 |
|
| 2011 |
Lowes DJ, Guiguemde WA, Connelly MC, Zhu F, Sigal MS, Clark JA, Lemoff AS, Derisi JL, Wilson EB, Guy RK. Optimization of propafenone analogues as antimalarial leads. Journal of Medicinal Chemistry. 54: 7477-85. PMID 21955244 DOI: 10.1021/Jm2005546 |
0.409 |
|
| 2011 |
Earl D, Bradnam K, St John J, Darling A, Lin D, Fass J, Yu HO, Buffalo V, Zerbino DR, Diekhans M, Nguyen N, Ariyaratne PN, Sung WK, Ning Z, Haimel M, ... ... DeRisi JL, et al. Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Research. 21: 2224-41. PMID 21926179 DOI: 10.1101/Gr.126599.111 |
0.632 |
|
| 2011 |
Hwang JY, Kawasuji T, Lowes DJ, Clark JA, Connelly MC, Zhu F, Guiguemde WA, Sigal MS, Wilson EB, Derisi JL, Guy RK. Synthesis and evaluation of 7-substituted 4-aminoquinoline analogues for antimalarial activity. Journal of Medicinal Chemistry. 54: 7084-93. PMID 21910466 DOI: 10.1021/jm200636z |
0.409 |
|
| 2011 |
Runckel C, Flenniken ML, Engel JC, Ruby JG, Ganem D, Andino R, DeRisi JL. Temporal analysis of the honey bee microbiome reveals four novel viruses and seasonal prevalence of known viruses, Nosema, and Crithidia. Plos One. 6: e20656. PMID 21687739 DOI: 10.1371/Journal.Pone.0020656 |
0.792 |
|
| 2011 |
Wootton SC, Kim DS, Kondoh Y, Chen E, Lee JS, Song JW, Huh JW, Taniguchi H, Chiu C, Boushey H, Lancaster LH, Wolters PJ, DeRisi J, Ganem D, Collard HR. Viral infection in acute exacerbation of idiopathic pulmonary fibrosis. American Journal of Respiratory and Critical Care Medicine. 183: 1698-702. PMID 21471095 DOI: 10.1164/rccm.201010-1752OC |
0.733 |
|
| 2011 |
Sorber K, Dimon MT, DeRisi JL. RNA-Seq analysis of splicing in Plasmodium falciparum uncovers new splice junctions, alternative splicing and splicing of antisense transcripts. Nucleic Acids Research. 39: 3820-35. PMID 21245033 DOI: 10.1093/Nar/Gkq1223 |
0.785 |
|
| 2010 |
Zhang Y, Anderson M, Weisman JL, Lu M, Choy CJ, Boyd VA, Price J, Sigal M, Clark J, Connelly M, Zhu F, Guiguemde WA, Jeffries C, Yang L, Lemoff A, ... ... Derisi JL, et al. Evaluation of Diarylureas for Activity Against Plasmodium falciparum. Acs Medicinal Chemistry Letters. 1: 460-465. PMID 21243104 DOI: 10.1021/Ml100083C |
0.398 |
|
| 2010 |
Dimon MT, Sorber K, DeRisi JL. HMMSplicer: a tool for efficient and sensitive discovery of known and novel splice junctions in RNA-Seq data. Plos One. 5: e13875. PMID 21079731 DOI: 10.1371/Journal.Pone.0013875 |
0.795 |
|
| 2010 |
Fordyce PM, Gerber D, Tran D, Zheng J, Li H, DeRisi JL, Quake SR. De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis. Nature Biotechnology. 28: 970-5. PMID 20802496 DOI: 10.1038/Nbt.1675 |
0.633 |
|
| 2010 |
Greninger AL, Holtz L, Kang G, Ganem D, Wang D, DeRisi JL. Serological evidence of human klassevirus infection. Clinical and Vaccine Immunology : Cvi. 17: 1584-8. PMID 20739504 DOI: 10.1128/Cvi.00152-10 |
0.449 |
|
| 2010 |
Guiguemde WA, Shelat AA, Bouck D, Duffy S, Crowther GJ, Davis PH, Smithson DC, Connelly M, Clark J, Zhu F, Jiménez-DÃaz MB, Martinez MS, Wilson EB, Tripathi AK, Gut J, ... ... Derisi JL, et al. Chemical genetics of Plasmodium falciparum. Nature. 465: 311-5. PMID 20485428 DOI: 10.1038/Nature09099 |
0.449 |
|
| 2010 |
Mattiazzi M, Jambhekar A, Kaferle P, Derisi JL, Krizaj I, Petrovic U. Genetic interactions between a phospholipase A2 and the Rim101 pathway components in S. cerevisiae reveal a role for this pathway in response to changes in membrane composition and shape. Molecular Genetics and Genomics : Mgg. 283: 519-30. PMID 20379744 DOI: 10.1007/S00438-010-0533-8 |
0.65 |
|
| 2010 |
Ray S, Madrid PB, Catz P, LeValley SE, Furniss MJ, Rausch LL, Guy RK, DeRisi JL, Iyer LV, Green CE, Mirsalis JC. Development of a new generation of 4-aminoquinoline antimalarial compounds using predictive pharmacokinetic and toxicology models. Journal of Medicinal Chemistry. 53: 3685-95. PMID 20361799 DOI: 10.1021/Jm100057H |
0.423 |
|
| 2010 |
Chiu CY, Greninger AL, Chen EC, Haggerty TD, Parsonnet J, Delwart E, Derisi JL, Ganem D. Cultivation and serological characterization of a human Theiler's-like cardiovirus associated with diarrheal disease. Journal of Virology. 84: 4407-14. PMID 20164225 DOI: 10.1128/Jvi.02536-09 |
0.448 |
|
| 2010 |
Kistler AL, Smith JM, Greninger AL, Derisi JL, Ganem D. Analysis of naturally occurring avian bornavirus infection and transmission during an outbreak of proventricular dilatation disease among captive psittacine birds. Journal of Virology. 84: 2176-9. PMID 19955301 DOI: 10.1128/Jvi.02191-09 |
0.473 |
|
| 2010 |
Fordyce PM, Gerber D, Tran D, Zheng J, Li H, Quake SR, DeRisi JL. A Microfluidics-Based Platform For Identification and Detailed Characterization of Transcription Factor Binding Sites Biophysical Journal. 98: 70a. DOI: 10.1016/j.bpj.2009.12.396 |
0.581 |
|
| 2009 |
Webster DR, Hekele AG, Lauring AS, Fischer KF, Li H, Andino R, DeRisi JL. An enhanced single base extension technique for the analysis of complex viral populations. Plos One. 4: e7453. PMID 19834618 DOI: 10.1371/Journal.Pone.0007453 |
0.508 |
|
| 2009 |
Gancz AY, Kistler AL, Greninger AL, Farnoushi Y, Mechani S, Perl S, Berkowitz A, Perez N, Clubb S, DeRisi JL, Ganem D, Lublin A. Experimental induction of proventricular dilatation disease in cockatiels (Nymphicus hollandicus) inoculated with brain homogenates containing avian bornavirus 4. Virology Journal. 6: 100. PMID 19589169 DOI: 10.1186/1743-422X-6-100 |
0.509 |
|
| 2009 |
Greninger AL, Runckel C, Chiu CY, Haggerty T, Parsonnet J, Ganem D, DeRisi JL. The complete genome of klassevirus - a novel picornavirus in pediatric stool. Virology Journal. 6: 82. PMID 19538752 DOI: 10.1186/1743-422X-6-82 |
0.801 |
|
| 2008 |
Sorber K, Chiu C, Webster D, Dimon M, Ruby JG, Hekele A, DeRisi JL. The long march: a sample preparation technique that enhances contig length and coverage by high-throughput short-read sequencing. Plos One. 3: e3495. PMID 18941527 DOI: 10.1371/Journal.Pone.0003495 |
0.776 |
|
| 2008 |
Chiu CY, Greninger AL, Kanada K, Kwok T, Fischer KF, Runckel C, Louie JK, Glaser CA, Yagi S, Schnurr DP, Haggerty TD, Parsonnet J, Ganem D, DeRisi JL. Identification of cardioviruses related to Theiler's murine encephalomyelitis virus in human infections. Proceedings of the National Academy of Sciences of the United States of America. 105: 14124-9. PMID 18768820 DOI: 10.1073/Pnas.0805968105 |
0.784 |
|
| 2008 |
Kistler AL, Gancz A, Clubb S, Skewes-Cox P, Fischer K, Sorber K, Chiu CY, Lublin A, Mechani S, Farnoushi Y, Greninger A, Wen CC, Karlene SB, Ganem D, DeRisi JL. Recovery of divergent avian bornaviruses from cases of proventricular dilatation disease: identification of a candidate etiologic agent. Virology Journal. 5: 88. PMID 18671869 DOI: 10.1186/1743-422X-5-88 |
0.787 |
|
| 2008 |
Chiu CY, Urisman A, Greenhow TL, Rouskin S, Yagi S, Schnurr D, Wright C, Drew WL, Wang D, Weintrub PS, Derisi JL, Ganem D. Utility of DNA microarrays for detection of viruses in acute respiratory tract infections in children. The Journal of Pediatrics. 153: 76-83. PMID 18571541 DOI: 10.1016/J.Jpeds.2007.12.035 |
0.617 |
|
| 2008 |
Madrid PB, Liou AP, DeRisi JL, Guy RK. Incorporation of an intramolecular hydrogen-bonding motif in the side chain of 4-aminoquinolines enhances activity against drug-resistant P. falciparum (Journal of Medical Chemistry (2006) 49 (4540)) Journal of Medicinal Chemistry. 51: 699. DOI: 10.1021/jm701572a |
0.382 |
|
| 2007 |
Shock JL, Fischer KF, DeRisi JL. Whole-genome analysis of mRNA decay in Plasmodium falciparum reveals a global lengthening of mRNA half-life during the intra-erythrocytic development cycle. Genome Biology. 8: R134. PMID 17612404 DOI: 10.1186/Gb-2007-8-7-R134 |
0.766 |
|
| 2007 |
Chiu CY, Alizadeh AA, Rouskin S, Merker JD, Yeh E, Yagi S, Schnurr D, Patterson BK, Ganem D, DeRisi JL. Diagnosis of a critical respiratory illness caused by human metapneumovirus by use of a pan-virus microarray. Journal of Clinical Microbiology. 45: 2340-3. PMID 17494722 DOI: 10.1128/Jcm.00364-07 |
0.473 |
|
| 2007 |
Kistler AL, Webster DR, Rouskin S, Magrini V, Credle JJ, Schnurr DP, Boushey HA, Mardis ER, Li H, DeRisi JL. Genome-wide diversity and selective pressure in the human rhinovirus. Virology Journal. 4: 40. PMID 17477878 DOI: 10.1186/1743-422X-4-40 |
0.594 |
|
| 2007 |
Jambhekar A, Derisi JL. Cis-acting determinants of asymmetric, cytoplasmic RNA transport. Rna (New York, N.Y.). 13: 625-42. PMID 17449729 DOI: 10.1261/Rna.262607 |
0.675 |
|
| 2006 |
Zhu J, Jambhekar A, Sarver A, DeRisi J. A Bayesian network driven approach to model the transcriptional response to nitric oxide in Saccharomyces cerevisiae. Plos One. 1: e94. PMID 17183726 DOI: 10.1371/Journal.Pone.0000094 |
0.763 |
|
| 2006 |
Chiu CY, Rouskin S, Koshy A, Urisman A, Fischer K, Yagi S, Schnurr D, Eckburg PB, Tompkins LS, Blackburn BG, Merker JD, Patterson BK, Ganem D, DeRisi JL. Microarray detection of human parainfluenzavirus 4 infection associated with respiratory failure in an immunocompetent adult. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 43: e71-6. PMID 16983602 DOI: 10.1086/507896 |
0.625 |
|
| 2006 |
Dahl EL, Shock JL, Shenai BR, Gut J, DeRisi JL, Rosenthal PJ. Tetracyclines specifically target the apicoplast of the malaria parasite Plasmodium falciparum. Antimicrobial Agents and Chemotherapy. 50: 3124-31. PMID 16940111 DOI: 10.1128/Aac.00394-06 |
0.776 |
|
| 2006 |
Weisman JL, Liou AP, Shelat AA, Cohen FE, Guy RK, DeRisi JL. Searching for new antimalarial therapeutics amongst known drugs. Chemical Biology & Drug Design. 67: 409-16. PMID 16882315 DOI: 10.1111/j.1747-0285.2006.00391.x |
0.435 |
|
| 2006 |
Madrid PB, Liou AP, DeRisi JL, Guy RK. Incorporation of an intramolecular hydrogen-bonding motif in the side chain of 4-aminoquinolines enhances activity against drug-resistant P. falciparum. Journal of Medicinal Chemistry. 49: 4535-43. PMID 16854059 DOI: 10.1021/Jm0600951 |
0.407 |
|
| 2006 |
Urisman A, Molinaro RJ, Fischer N, Plummer SJ, Casey G, Klein EA, Malathi K, Magi-Galluzzi C, Tubbs RR, Ganem D, Silverman RH, DeRisi JL. Identification of a novel Gammaretrovirus in prostate tumors of patients homozygous for R462Q RNASEL variant. Plos Pathogens. 2: e25. PMID 16609730 DOI: 10.1371/Journal.Ppat.0020025 |
0.658 |
|
| 2006 |
Llinás M, Bozdech Z, Wong ED, Adai AT, DeRisi JL. Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains. Nucleic Acids Research. 34: 1166-73. PMID 16493140 DOI: 10.1093/Nar/Gkj517 |
0.512 |
|
| 2006 |
Anderson MO, Sherrill J, Madrid PB, Liou AP, Weisman JL, DeRisi JL, Guy RK. Parallel synthesis of 9-aminoacridines and their evaluation against chloroquine-resistant Plasmodium falciparum. Bioorganic & Medicinal Chemistry. 14: 334-43. PMID 16216519 DOI: 10.1016/J.Bmc.2005.08.017 |
0.435 |
|
| 2005 |
Jambhekar A, McDermott K, Sorber K, Shepard KA, Vale RD, Takizawa PA, DeRisi JL. Unbiased selection of localization elements reveals cis-acting determinants of mRNA bud localization in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 102: 18005-10. PMID 16326802 DOI: 10.1073/Pnas.0509229102 |
0.772 |
|
| 2005 |
Urisman A, Fischer KF, Chiu CY, Kistler AL, Beck S, Wang D, DeRisi JL. E-Predict: a computational strategy for species identification based on observed DNA microarray hybridization patterns. Genome Biology. 6: R78. PMID 16168085 DOI: 10.1186/Gb-2005-6-9-R78 |
0.597 |
|
| 2005 |
Sarver A, DeRisi J. Fzf1p regulates an inducible response to nitrosative stress in Saccharomyces cerevisiae. Molecular Biology of the Cell. 16: 4781-91. PMID 16014606 DOI: 10.1091/Mbc.E05-05-0436 |
0.626 |
|
| 2005 |
Madrid PB, Sherrill J, Liou AP, Weisman JL, Derisi JL, Guy RK. Synthesis of ring-substituted 4-aminoquinolines and evaluation of their antimalarial activities. Bioorganic & Medicinal Chemistry Letters. 15: 1015-8. PMID 15686903 DOI: 10.1016/J.Bmcl.2004.12.037 |
0.402 |
|
| 2005 |
Niwa M, Patil CK, DeRisi J, Walter P. Genome-scale approaches for discovering novel nonconventional splicing substrates of the Ire1 nuclease. Genome Biology. 6: R3. PMID 15642095 DOI: 10.1186/Gb-2004-6-1-R3 |
0.36 |
|
| 2004 |
Galgoczy DJ, Cassidy-Stone A, Llinás M, O'Rourke SM, Herskowitz I, DeRisi JL, Johnson AD. Genomic dissection of the cell-type-specification circuit in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 101: 18069-74. PMID 15604142 DOI: 10.1073/Pnas.0407611102 |
0.502 |
|
| 2004 |
Llinás M, DeRisi JL. Pernicious plans revealed: Plasmodium falciparum genome wide expression analysis. Current Opinion in Microbiology. 7: 382-7. PMID 15358256 DOI: 10.1016/J.Mib.2004.06.014 |
0.574 |
|
| 2004 |
Glynn EF, Megee PC, Yu HG, Mistrot C, Unal E, Koshland DE, DeRisi JL, Gerton JL. Genome-wide mapping of the cohesin complex in the yeast Saccharomyces cerevisiae. Plos Biology. 2: E259. PMID 15309048 DOI: 10.1371/Journal.Pbio.0020259 |
0.588 |
|
| 2004 |
Weber SA, Gerton JL, Polancic JE, DeRisi JL, Koshland D, Megee PC. The kinetochore is an enhancer of pericentric cohesin binding. Plos Biology. 2: E260. PMID 15309047 DOI: 10.1371/Journal.Pbio.0020260 |
0.565 |
|
| 2004 |
Madrid PB, Wilson NT, DeRisi JL, Guy RK. Parallel synthesis and antimalarial screening of a 4-aminoquinoline library. Journal of Combinatorial Chemistry. 6: 437-42. PMID 15132606 DOI: 10.1021/Cc0340473 |
0.433 |
|
| 2003 |
Wang D, Urisman A, Liu YT, Springer M, Ksiazek TG, Erdman DD, Mardis ER, Hickenbotham M, Magrini V, Eldred J, Latreille JP, Wilson RK, Ganem D, DeRisi JL. Viral discovery and sequence recovery using DNA microarrays. Plos Biology. 1: E2. PMID 14624234 DOI: 10.1371/Journal.Pbio.0000002 |
0.675 |
|
| 2003 |
Shepard KA, Gerber AP, Jambhekar A, Takizawa PA, Brown PO, Herschlag D, DeRisi JL, Vale RD. Widespread cytoplasmic mRNA transport in yeast: identification of 22 bud-localized transcripts using DNA microarray analysis. Proceedings of the National Academy of Sciences of the United States of America. 100: 11429-34. PMID 13679573 DOI: 10.1073/Pnas.2033246100 |
0.72 |
|
| 2003 |
Bozdech Z, Llinás M, Pulliam BL, Wong ED, Zhu J, DeRisi JL. The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum. Plos Biology. 1: E5. PMID 12929205 DOI: 10.1371/Journal.Pbio.0000005 |
0.671 |
|
| 2003 |
Bozdech Z, Zhu J, Joachimiak MP, Cohen FE, Pulliam B, DeRisi JL. Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray. Genome Biology. 4: R9. PMID 12620119 DOI: 10.1186/Gb-2003-4-2-R9 |
0.519 |
|
| 2002 |
Gerton JL, DeRisi JL. Mnd1p: an evolutionarily conserved protein required for meiotic recombination. Proceedings of the National Academy of Sciences of the United States of America. 99: 6895-900. PMID 12011448 DOI: 10.1073/Pnas.102167899 |
0.621 |
|
| 2001 |
DeRisi J. Overview of nucleic acid arrays. Current Protocols in Neuroscience / Editorial Board, Jacqueline N. Crawley ... [Et Al.]. Unit 4.25. PMID 18428485 DOI: 10.1002/0471142301.Ns0425S16 |
0.336 |
|
| 2001 |
Derisi J. Overview of nucleic acid arrays. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit 22.1. PMID 18265199 DOI: 10.1002/0471142727.Mb2201S49 |
0.337 |
|
| 2001 |
Backhus LE, DeRisi J, Bisson LF. Functional genomic analysis of a commercial wine strain of Saccharomyces cerevisiae under differing nitrogen conditions. Fems Yeast Research. 1: 111-25. PMID 12702356 DOI: 10.1111/J.1567-1364.2001.Tb00022.X |
0.315 |
|
| 2001 |
Miki R, Kadota K, Bono H, Mizuno Y, Tomaru Y, Carninci P, Itoh M, Shibata K, Kawai J, Konno H, Watanabe S, Sato K, Tokusumi Y, Kikuchi N, Ishii Y, ... ... DeRisi JL, et al. Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arrays. Proceedings of the National Academy of Sciences of the United States of America. 98: 2199-204. PMID 11226216 DOI: 10.1073/Pnas.041605498 |
0.769 |
|
| 2001 |
Kuhn KM, DeRisi JL, Brown PO, Sarnow P. Global and specific translational regulation in the genomic response of Saccharomyces cerevisiae to a rapid transfer from a fermentable to a nonfermentable carbon source. Molecular and Cellular Biology. 21: 916-27. PMID 11154278 DOI: 10.1128/Mcb.21.3.916-927.2001 |
0.447 |
|
| 2000 |
Ogawa N, DeRisi J, Brown PO. New components of a system for phosphate accumulation and polyphosphate metabolism in Saccharomyces cerevisiae revealed by genomic expression analysis. Molecular Biology of the Cell. 11: 4309-21. PMID 11102525 DOI: 10.1091/Mbc.11.12.4309 |
0.552 |
|
| 2000 |
Gerton JL, DeRisi J, Shroff R, Lichten M, Brown PO, Petes TD. Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 97: 11383-90. PMID 11027339 DOI: 10.1073/Pnas.97.21.11383 |
0.686 |
|
| 2000 |
Khodursky AB, Peter BJ, Schmid MB, DeRisi J, Botstein D, Brown PO, Cozzarelli NR. Analysis of topoisomerase function in bacterial replication fork movement: use of DNA microarrays. Proceedings of the National Academy of Sciences of the United States of America. 97: 9419-24. PMID 10944214 DOI: 10.1073/Pnas.97.17.9419 |
0.636 |
|
| 2000 |
DeRisi J, van den Hazel B, Marc P, Balzi E, Brown P, Jacq C, Goffeau A. Genome microarray analysis of transcriptional activation in multidrug resistance yeast mutants. Febs Letters. 470: 156-60. PMID 10734226 DOI: 10.1016/S0014-5793(00)01294-1 |
0.537 |
|
| 2000 |
Hayward RE, Derisi JL, Alfadhli S, Kaslow DC, Brown PO, Rathod PK. Shotgun DNA microarrays and stage-specific gene expression in Plasmodium falciparum malaria. Molecular Microbiology. 35: 6-14. PMID 10632873 DOI: 10.1046/J.1365-2958.2000.01730.X |
0.523 |
|
| 1999 |
Wilson M, DeRisi J, Kristensen HH, Imboden P, Rane S, Brown PO, Schoolnik GK. Exploring drug-induced alterations in gene expression in Mycobacterium tuberculosis by microarray hybridization. Proceedings of the National Academy of Sciences of the United States of America. 96: 12833-8. PMID 10536008 DOI: 10.1073/Pnas.96.22.12833 |
0.523 |
|
| 1999 |
DeRisi JL, Iyer VR. Genomics and array technology. Current Opinion in Oncology. 11: 76-9. PMID 9914882 DOI: 10.1097/00001622-199901000-00015 |
0.612 |
|
| 1999 |
Okazaki Y, Miki R, Mizuno Y, Tomaru Y, Kadota K, Carninci P, Shibata K, Itoh M, Ozawa Y, Kawai J, Konno H, Fukunishi Y, Kusumi T, Goto H, Nitanda H, ... ... DeRisi J, et al. Gene expression profiling using a mouse full-length 20 K cDNA microarray Nature Genetics. 23: 66-67. DOI: 10.1038/14379 |
0.756 |
|
| 1999 |
Hayashibara KC, Ray E, Elashoff D, DeRisi J, McCusker JH, Siegmund DO, Brown PO. Mapping single and multigenetic traits in S. cerevisiae by genomic mismatch scanning and DNA microarrays Nature Genetics. 23: 49-50. DOI: 10.1038/14321 |
0.497 |
|
| 1998 |
Lutfiyya LL, Iyer VR, DeRisi J, DeVit MJ, Brown PO, Johnston M. Characterization of three related glucose repressors and genes they regulate in Saccharomyces cerevisiae. Genetics. 150: 1377-91. PMID 9832517 |
0.403 |
|
| 1998 |
Marton MJ, DeRisi JL, Bennett HA, Iyer VR, Meyer MR, Roberts CJ, Stoughton R, Burchard J, Slade D, Dai H, Bassett DE, Hartwell LH, Brown PO, Friend SH. Drug target validation and identification of secondary drug target effects using DNA microarrays. Nature Medicine. 4: 1293-301. PMID 9809554 DOI: 10.1038/3282 |
0.647 |
|
| 1998 |
Chu S, DeRisi J, Eisen M, Mulholland J, Botstein D, Brown PO, Herskowitz I. The transcriptional program of sporulation in budding yeast. Science (New York, N.Y.). 282: 699-705. PMID 9784122 DOI: 10.1126/Science.282.5389.699 |
0.747 |
|
| 1998 |
Gerton JL, Ohgi S, Olsen M, DeRisi J, Brown PO. Effects of mutations in residues near the active site of human immunodeficiency virus type 1 integrase on specific enzyme-substrate interactions. Journal of Virology. 72: 5046-55. PMID 9573274 DOI: 10.1128/Jvi.72.6.5046-5055.1998 |
0.676 |
|
| 1997 |
DeRisi JL, Iyer VR, Brown PO. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science (New York, N.Y.). 278: 680-6. PMID 9381177 DOI: 10.1126/Science.278.5338.680 |
0.668 |
|
| 1997 |
Lashkari DA, DeRisi JL, McCusker JH, Namath AF, Gentile C, Hwang SY, Brown PO, Davis RW. Yeast microarrays for genome wide parallel genetic and gene expression analysis. Proceedings of the National Academy of Sciences of the United States of America. 94: 13057-62. PMID 9371799 DOI: 10.1073/Pnas.94.24.13057 |
0.499 |
|
| 1997 |
Bittner ML, DeRisi J, Meltzer PS, Chen Y, Penland L, Ray M, Su YA, Jiang, Hofmann T, Brown P, Trent JM. Assaying disease-specific gene expression by CDNA micro-arrays Cancer Genetics and Cytogenetics. 98: 150. DOI: 10.1016/S0165-4608(97)90244-2 |
0.493 |
|
| 1996 |
DeRisi J, Penland L, Brown PO, Bittner ML, Meltzer PS, Ray M, Chen Y, Su YA, Trent JM. Use of a cDNA microarray to analyse gene expression patterns in human cancer. Nature Genetics. 14: 457-60. PMID 8944026 DOI: 10.1038/Ng1296-457 |
0.459 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2021 |
Retallack H, Popova KD, Laurie MT, Sunshine S, DeRisi JL. Persistence of ambigrammatic narnaviruses requires translation of the reverse open reading frame. Journal of Virology. PMID 33762418 DOI: 10.1128/JVI.00109-21 |
0.299 |
|
| 2008 |
Chin CS, Chubukov V, Jolly ER, DeRisi J, Li H. Dynamics and design principles of a basic regulatory architecture controlling metabolic pathways. Plos Biology. 6: e146. PMID 18563967 DOI: 10.1371/Journal.Pbio.0060146 |
0.299 |
|
| 2016 |
Wilson MR, Fedewa G, Stenglein MD, Olejnik J, Rennick LJ, Nambulli S, Feldmann F, Duprex WP, Connor JH, Mühlberger E, DeRisi JL. Multiplexed Metagenomic Deep Sequencing To Analyze the Composition of High-Priority Pathogen Reagents. Msystems. 1. PMID 27822544 DOI: 10.1128/mSystems.00058-16 |
0.297 |
|
| 2016 |
Faden DL, Arron ST, Heaton CM, DeRisi J, South AP, Wang SJ. Targeted next-generation sequencing of TP53 in oral tongue carcinoma from non-smokers. Journal of Otolaryngology - Head & Neck Surgery = Le Journal D'Oto-Rhino-Laryngologie Et De Chirurgie Cervico-Faciale. 45: 47. PMID 27640185 DOI: 10.1186/S40463-016-0160-4 |
0.286 |
|
| 2014 |
Stenglein MD, Jacobson ER, Wozniak EJ, Wellehan JF, Kincaid A, Gordon M, Porter BF, Baumgartner W, Stahl S, Kelley K, Towner JS, DeRisi JL. Ball python nidovirus: a candidate etiologic agent for severe respiratory disease in Python regius. Mbio. 5: e01484-14. PMID 25205093 DOI: 10.1128/Mbio.01484-14 |
0.286 |
|
| 2002 |
Greenbaum DC, Baruch A, Grainger M, Bozdech Z, Medzihradszky KF, Engel J, DeRisi J, Holder AA, Bogyo M. A role for the protease falcipain 1 in host cell invasion by the human malaria parasite. Science (New York, N.Y.). 298: 2002-6. PMID 12471262 DOI: 10.1126/Science.1077426 |
0.284 |
|
| 2012 |
Stenglein MD, Velazquez E, Greenacre C, Wilkes RP, Ruby JG, Lankton JS, Ganem D, Kennedy MA, DeRisi JL. Complete genome sequence of an astrovirus identified in a domestic rabbit (Oryctolagus cuniculus) with gastroenteritis. Virology Journal. 9: 216. PMID 22998755 DOI: 10.1186/1743-422X-9-216 |
0.282 |
|
| 2012 |
Yozwiak NL, Skewes-Cox P, Stenglein MD, Balmaseda A, Harris E, DeRisi JL. Virus identification in unknown tropical febrile illness cases using deep sequencing. Plos Neglected Tropical Diseases. 6: e1485. PMID 22347512 DOI: 10.1371/Journal.Pntd.0001485 |
0.282 |
|
| 2021 |
Caro F, DeRisi JL. Genome-Wide Ribosome Profiling of the Plasmodium falciparum Intraerythrocytic Developmental Cycle. Methods in Molecular Biology (Clifton, N.J.). 2252: 57-87. PMID 33765271 DOI: 10.1007/978-1-0716-1150-0_3 |
0.282 |
|
| 2013 |
Ruby JG, Bellare P, Derisi JL. PRICE: software for the targeted assembly of components of (Meta) genomic sequence data. G3 (Bethesda, Md.). 3: 865-80. PMID 23550143 DOI: 10.1534/g3.113.005967 |
0.282 |
|
| 2007 |
Jolly ER, Chin CS, Miller S, Bahgat MM, Lim KC, DeRisi J, McKerrow JH. Gene expression patterns during adaptation of a helminth parasite to different environmental niches. Genome Biology. 8: R65. PMID 17456242 DOI: 10.1186/Gb-2007-8-4-R65 |
0.282 |
|
| 2020 |
Ehrenkaufer G, Li P, Stebbins EE, Kangussu-Marcolino MM, Debnath A, White CV, Moser MS, DeRisi J, Gisselberg J, Yeh E, Wang SC, Company AH, Monti L, Caffrey CR, Huston CD, et al. Identification of anisomycin, prodigiosin and obatoclax as compounds with broad-spectrum anti-parasitic activity. Plos Neglected Tropical Diseases. 14: e0008150. PMID 32196500 DOI: 10.1371/Journal.Pntd.0008150 |
0.281 |
|
| 2010 |
Ganem D, Kistler A, DeRisi J. Achalasia and viral infection: new insights from veterinary medicine. Science Translational Medicine. 2: 33ps24. PMID 20505212 DOI: 10.1126/Scitranslmed.3000986 |
0.28 |
|
| 2014 |
Caro F, Ahyong V, Betegon M, DeRisi JL. Genome-wide regulatory dynamics of translation in the Plasmodium falciparum asexual blood stages. Elife. 3. PMID 25493618 DOI: 10.7554/eLife.04106 |
0.278 |
|
| 2021 |
Ramesh A, Bailey ES, Ahyong V, Langelier C, Phelps M, Neff N, Sit R, Tato C, DeRisi JL, Greer AG, Gray GC. Metagenomic characterization of swine slurry in a North American swine farm operation. Scientific Reports. 11: 16994. PMID 34417469 DOI: 10.1038/s41598-021-95804-y |
0.275 |
|
| 2019 |
Retallack H, Clubb S, DeRisi JL. Genome Sequence of a Divergent Avian Metapneumovirus from a Monk Parakeet (). Microbiology Resource Announcements. 8. PMID 31000555 DOI: 10.1128/MRA.00284-19 |
0.273 |
|
| 2015 |
Schulze CJ, Navarro G, Ebert D, DeRisi J, Linington RG. Salinipostins A-K, long-chain bicyclic phosphotriesters as a potent and selective antimalarial chemotype. The Journal of Organic Chemistry. 80: 1312-20. PMID 25584395 DOI: 10.1021/Jo5024409 |
0.272 |
|
| 2022 |
Madera S, Kistler A, Ranaivoson HC, Ahyong V, Andrianiaina A, Andry S, Raharinosy V, Randriambolamanantsoa TH, Ravelomanantsoa NAF, Tato CM, DeRisi JL, Aguilar HC, Lacoste V, Dussart P, Heraud JM, et al. Discovery and Genomic Characterization of a Novel Henipavirus, Angavokely Virus, from Fruit Bats in Madagascar. Journal of Virology. e0092122. PMID 36040175 DOI: 10.1128/jvi.00921-22 |
0.269 |
|
| 2013 |
Melters DP, Bradnam KR, Young HA, Telis N, May MR, Ruby JG, Sebra R, Peluso P, Eid J, Rank D, Garcia JF, DeRisi JL, Smith T, Tobias C, Ross-Ibarra J, et al. Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution. Genome Biology. 14: R10. PMID 23363705 DOI: 10.1186/Gb-2013-14-1-R10 |
0.268 |
|
| 2010 |
Yozwiak NL, Skewes-Cox P, Gordon A, Saborio S, Kuan G, Balmaseda A, Ganem D, Harris E, DeRisi JL. Human enterovirus 109: a novel interspecies recombinant enterovirus isolated from a case of acute pediatric respiratory illness in Nicaragua. Journal of Virology. 84: 9047-58. PMID 20592079 DOI: 10.1128/Jvi.00698-10 |
0.267 |
|
| 2017 |
Langelier C, White CV, Sontag MK, Mourani PM, DeRisi JL. Complete Genome Sequence of a Divergent Human Rhinovirus C Isolate from an Infant with Severe Community-Acquired Pneumonia in Colorado, USA. Genome Announcements. 5. PMID 29192071 DOI: 10.1128/Genomea.01245-17 |
0.265 |
|
| 2003 |
Rota PA, Oberste MS, Monroe SS, Nix WA, Campagnoli R, Icenogle JP, Peñaranda S, Bankamp B, Maher K, Chen MH, Tong S, Tamin A, Lowe L, Frace M, DeRisi JL, et al. Characterization of a novel coronavirus associated with severe acute respiratory syndrome. Science (New York, N.Y.). 300: 1394-9. PMID 12730500 DOI: 10.1126/Science.1085952 |
0.264 |
|
| 2017 |
Faden DL, Thomas S, Myers J, Agrawal N, DeRisi J. Abstract 11: APOBEC is a major source of mutations in head and neck squamous cell carcinoma Clinical Cancer Research. 23: 11-11. DOI: 10.1158/1557-3265.Aacrahns17-11 |
0.263 |
|
| 2017 |
Faden DL, Asthana S, Tihan T, DeRisi J, Kliot M. Correction: Whole Exome Sequencing of Growing and Non-Growing Cutaneous Neurofibromas from a Single Patient with Neurofibromatosis Type 1. Plos One. 12: e0172620. PMID 28207875 DOI: 10.1371/Journal.Pone.0172620 |
0.263 |
|
| 2019 |
Quan J, Langelier C, Kuchta A, Batson J, Teyssier N, Lyden A, Caldera S, McGeever A, Dimitrov B, King R, Wilheim J, Murphy M, Ares LP, Travisano KA, Sit R, ... ... DeRisi JL, et al. FLASH: a next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences. Nucleic Acids Research. PMID 31114866 DOI: 10.1093/Nar/Gkz418 |
0.258 |
|
| 2022 |
Albright J, Mick E, Sanchez-Guerrero E, Kamm J, Mitchell A, Detweiler AM, Neff N, Tsitsiklis A, Hayakawa Serpa P, Ratnasiri K, Havlir D, Kistler A, DeRisi JL, Pisco AO, Langelier CR. A 2-Gene Host Signature for Improved Accuracy of COVID-19 Diagnosis Agnostic to Viral Variants. Msystems. e0067122. PMID 36507688 DOI: 10.1128/msystems.00671-22 |
0.257 |
|
| 2002 |
Wang D, Coscoy L, Zylberberg M, Avila PC, Boushey HA, Ganem D, DeRisi JL. Microarray-based detection and genotyping of viral pathogens. Proceedings of the National Academy of Sciences of the United States of America. 99: 15687-92. PMID 12429852 DOI: 10.1073/Pnas.242579699 |
0.256 |
|
| 2020 |
Saha S, Malaker R, Sajib MSI, Hasanuzzaman M, Rahman H, Ahmed ZB, Islam MS, Islam M, Hooda Y, Ahyong V, Vanaerschot M, Batson J, Hao S, Kamm J, Kistler A, ... ... DeRisi JL, et al. Complete Genome Sequence of a Novel Coronavirus (SARS-CoV-2) Isolate from Bangladesh. Microbiology Resource Announcements. 9. PMID 32527780 DOI: 10.1128/MRA.00568-20 |
0.252 |
|
| 2011 |
Chen EC, Miller SA, DeRisi JL, Chiu CY. Using a pan-viral microarray assay (Virochip) to screen clinical samples for viral pathogens. Journal of Visualized Experiments : Jove. PMID 21559002 DOI: 10.3791/2536 |
0.25 |
|
| 2010 |
Hanssen E, Carlton P, Deed S, Klonis N, Sedat J, DeRisi J, Tilley L. Whole cell imaging reveals novel modular features of the exomembrane system of the malaria parasite, Plasmodium falciparum. International Journal For Parasitology. 40: 123-34. PMID 19766648 DOI: 10.1016/J.Ijpara.2009.09.004 |
0.25 |
|
| 2014 |
Stenglein MD, Leavitt EB, Abramovitch MA, McGuire JA, DeRisi JL. Genome Sequence of a Bornavirus Recovered from an African Garter Snake (Elapsoidea loveridgei). Genome Announcements. 2. PMID 25301640 DOI: 10.1128/Genomea.00779-14 |
0.248 |
|
| 2018 |
Retallack H, Okihiro MS, Britton E, Van Sommeran S, DeRisi JL. Metagenomic Next-Generation Sequencing Reveals Miamiensis avidus (Ciliophora: Scuticociliatida) In the 2017 Epizootic of Leopard Sharks ( Triakis semifasciata) In San Francisco Bay, California, USA. Journal of Wildlife Diseases. PMID 30289337 DOI: 10.7589/2018-04-097 |
0.246 |
|
| 2020 |
Manning JE, Bohl JA, Lay S, Chea S, Sovann L, Sengdoeurn Y, Heng S, Vuthy C, Kalantar K, Ahyong V, Tan M, Sheu J, Tato CM, DeRisi JL, Baril L, et al. Rapid metagenomic characterization of a case of imported COVID-19 in Cambodia. Biorxiv : the Preprint Server For Biology. PMID 32511296 DOI: 10.1101/2020.03.02.968818 |
0.246 |
|
| 2017 |
Horst JA, Wu W, DeRisi JL. MinorityReport, software for generalized analysis of causal genetic variants. Malaria Journal. 16: 90. PMID 28231785 DOI: 10.1186/S12936-017-1730-2 |
0.246 |
|
| 2017 |
Crawford ED, Quan J, Horst JA, Ebert D, Wu W, DeRisi JL. Plasmid-free CRISPR/Cas9 genome editing in Plasmodium falciparum confirms mutations conferring resistance to the dihydroisoquinolone clinical candidate SJ733. Plos One. 12: e0178163. PMID 28542423 DOI: 10.1371/Journal.Pone.0178163 |
0.245 |
|
| 2015 |
Stenglein MD, Jacobson ER, Chang LW, Sanders C, Hawkins MG, Guzman DS, Drazenovich T, Dunker F, Kamaka EK, Fisher D, Reavill DR, Meola LF, Levens G, DeRisi JL. Widespread recombination, reassortment, and transmission of unbalanced compound viral genotypes in natural arenavirus infections. Plos Pathogens. 11: e1004900. PMID 25993603 DOI: 10.1371/Journal.Ppat.1004900 |
0.241 |
|
| 2005 |
Silvestrini F, Bozdech Z, Lanfrancotti A, Di Giulio E, Bultrini E, Picci L, Derisi JL, Pizzi E, Alano P. Genome-wide identification of genes upregulated at the onset of gametocytogenesis in Plasmodium falciparum. Molecular and Biochemical Parasitology. 143: 100-10. PMID 16026866 DOI: 10.1016/j.molbiopara.2005.04.015 |
0.24 |
|
| 2012 |
Stenglein MD, Sanders C, Kistler AL, Ruby JG, Franco JY, Reavill DR, Dunker F, Derisi JL. Identification, characterization, and in vitro culture of highly divergent arenaviruses from boa constrictors and annulated tree boas: candidate etiological agents for snake inclusion body disease. Mbio. 3: e00180-12. PMID 22893382 DOI: 10.1128/Mbio.00180-12 |
0.24 |
|
| 2018 |
Fedewa G, Radoshitzky SR, Chī X, Dǒng L, Zeng X, Spear M, Strauli N, Ng M, Chandran K, Stenglein MD, Hernandez RD, Jahrling PB, Kuhn JH, DeRisi JL. Ebola virus, but not Marburg virus, replicates efficiently and without required adaptation in snake cells. Virus Evolution. 4: vey034. PMID 30524754 DOI: 10.1093/Ve/Vey034 |
0.238 |
|
| 2023 |
Wadford DA, Baumrind N, Baylis EF, Bell JM, Bouchard EL, Crumpler M, Foote EM, Gilliam S, Glaser CA, Hacker JK, Ledin K, Messenger SL, Morales C, Smith EA, Sevinsky JR, ... ... DeRisi J, et al. Implementation of California COVIDNet - a multi-sector collaboration for statewide SARS-CoV-2 genomic surveillance. Frontiers in Public Health. 11: 1249614. PMID 37937074 DOI: 10.3389/fpubh.2023.1249614 |
0.238 |
|
| 2015 |
Kuhn JH, Dürrwald R, Bào Y, Briese T, Carbone K, Clawson AN, deRisi JL, Garten W, Jahrling PB, Kolodziejek J, Rubbenstroth D, Schwemmle M, Stenglein M, Tomonaga K, Weissenböck H, et al. Taxonomic reorganization of the family Bornaviridae. Archives of Virology. 160: 621-32. PMID 25449305 DOI: 10.1007/S00705-014-2276-Z |
0.236 |
|
| 2020 |
Zhou J, Li S, Leung KK, O'Donovan B, Zou JY, DeRisi JL, Wells JA. Deep profiling of protease substrate specificity enabled by dual random and scanned human proteome substrate phage libraries. Proceedings of the National Academy of Sciences of the United States of America. PMID 32973096 DOI: 10.1073/pnas.2009279117 |
0.235 |
|
| 2003 |
Ksiazek TG, Erdman D, Goldsmith CS, Zaki SR, Peret T, Emery S, Tong S, Urbani C, Comer JA, Lim W, Rollin PE, Dowell SF, Ling AE, Humphrey CD, Shieh WJ, ... ... DeRisi J, et al. A novel coronavirus associated with severe acute respiratory syndrome. The New England Journal of Medicine. 348: 1953-66. PMID 12690092 DOI: 10.1056/NEJMoa030781 |
0.232 |
|
| 2015 |
Wilson MR, Shanbhag NM, Reid MJ, Singhal NS, Gelfand JM, Sample HA, Benkli B, O'Donovan BD, Ali IK, Keating MK, Dunnebacke TH, Wood MD, Bollen A, DeRisi JL. Diagnosing Balamuthia mandrillaris Encephalitis With Metagenomic Deep Sequencing. Annals of Neurology. PMID 26290222 DOI: 10.1002/Ana.24499 |
0.232 |
|
| 2021 |
Sarma A, Christenson SA, Byrne A, Mick E, Pisco AO, DeVoe C, Deiss T, Ghale R, Zha BS, Tsitsiklis A, Jauregui A, Moazed F, Detweiler AM, Spottiswoode N, Sinha P, ... ... DeRisi JL, et al. Tracheal aspirate RNA sequencing identifies distinct immunological features of COVID-19 ARDS. Nature Communications. 12: 5152. PMID 34446707 DOI: 10.1038/s41467-021-25040-5 |
0.231 |
|
| 2021 |
Peng J, Mann SA, Mitchell AM, Liu J, Laurie MT, Sunshine S, Pilarowski G, Ayscue P, Kistler A, Vanaerschot M, Li LM, McGeever A, Chow ED, Team I, Marquez C, ... ... DeRisi J, et al. Estimation of secondary household attack rates for emergent SARS-CoV-2 variants detected by genomic surveillance at a community-based testing site in San Francisco. Medrxiv : the Preprint Server For Health Sciences. PMID 33688689 DOI: 10.1101/2021.03.01.21252705 |
0.229 |
|
| 2014 |
Rubio CA, Weisburd B, Holderfield M, Arias C, Fang E, DeRisi JL, Fanidi A. Transcriptome-wide characterization of the eIF4A signature highlights plasticity in translation regulation. Genome Biology. 15: 476. PMID 25273840 DOI: 10.1186/S13059-014-0476-1 |
0.228 |
|
| 2021 |
Peng J, Liu J, Mann SA, Mitchell AM, Laurie MT, Sunshine S, Pilarowski G, Ayscue P, Kistler A, Vanaerschot M, Li LM, McGeever A, Chow ED, Marquez C, Nakamura R, ... ... DeRisi J, et al. Estimation of secondary household attack rates for emergent spike L452R SARS-CoV-2 variants detected by genomic surveillance at a community-based testing site in San Francisco. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 33788923 DOI: 10.1093/cid/ciab283 |
0.228 |
|
| 2020 |
Mick E, Kamm J, Pisco AO, Ratnasiri K, Babik JM, Calfee CS, Castaneda G, DeRisi JL, Detweiler AM, Hao S, Kangelaris KN, Kumar GR, Li LM, Mann SA, Neff N, et al. Upper airway gene expression differentiates COVID-19 from other acute respiratory illnesses and reveals suppression of innate immune responses by SARS-CoV-2. Medrxiv : the Preprint Server For Health Sciences. PMID 32511476 DOI: 10.1101/2020.05.18.20105171 |
0.224 |
|
| 2021 |
Zylberberg M, Van Hemert C, Handel CM, Liu RM, DeRisi JL. POECIVIRUS IS PRESENT IN INDIVIDUALS WITH BEAK DEFORMITIES IN SEVEN SPECIES OF NORTH AMERICAN BIRDS. Journal of Wildlife Diseases. 57: 273-281. PMID 33822149 DOI: 10.7589/JWD-D-20-00017 |
0.224 |
|
| 2019 |
Ramesh A, Nakielny S, Hsu J, Kyohere M, Byaruhanga O, de Bourcy C, Egger R, Dimitrov B, Juan YF, Sheu J, Wang J, Kalantar K, Langelier C, Ruel T, Mpimbaza A, ... ... DeRisi JL, et al. Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda. Plos One. 14: e0218318. PMID 31220115 DOI: 10.1371/Journal.Pone.0218318 |
0.224 |
|
| 2017 |
Gonzales J, Doan T, Shantha JG, Bloomer M, Wilson MR, DeRisi JL, Acharya N. Metagenomic deep sequencing of aqueous fluid detects intraocular lymphomas. The British Journal of Ophthalmology. PMID 29122821 DOI: 10.1136/Bjophthalmol-2017-311151 |
0.223 |
|
| 2020 |
Gu W, Deng X, Lee M, Sucu YD, Arevalo S, Stryke D, Federman S, Gopez A, Reyes K, Zorn K, Sample H, Yu G, Ishpuniani G, Briggs B, Chow ED, ... ... DeRisi JL, et al. Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids. Nature Medicine. PMID 33169017 DOI: 10.1038/s41591-020-1105-z |
0.222 |
|
| 2016 |
Doan T, Wilson MR, Crawford ED, Chow ED, Khan LM, Knopp KA, O'Donovan BD, Xia D, Hacker JK, Stewart JM, Gonzales JA, Acharya NR, DeRisi JL. Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens. Genome Medicine. 8: 90. PMID 27562436 DOI: 10.1186/S13073-016-0344-6 |
0.222 |
|
| 2013 |
Abromaitis S, Nelson CS, Previte D, Yoon KS, Clark JM, DeRisi JL, Koehler JE. Bartonella quintana deploys host and vector temperature-specific transcriptomes. Plos One. 8: e58773. PMID 23554923 DOI: 10.1371/Journal.Pone.0058773 |
0.22 |
|
| 2022 |
Garcia VE, Dial R, DeRisi JL. Functional characterization of 5' UTR cis-acting sequence elements that modulate translational efficiency in Plasmodium falciparum and humans. Malaria Journal. 21: 15. PMID 34991611 DOI: 10.1186/s12936-021-04024-2 |
0.22 |
|
| 2006 |
Green BM, Morreale RJ, Ozaydin B, Derisi JL, Li JJ. Genome-wide mapping of DNA synthesis in Saccharomyces cerevisiae reveals that mechanisms preventing reinitiation of DNA replication are not redundant. Molecular Biology of the Cell. 17: 2401-14. PMID 16481397 DOI: 10.1091/Mbc.E05-11-1043 |
0.219 |
|
| 2019 |
Saha S, Ramesh A, Kalantar K, Malaker R, Hasanuzzaman M, Khan LM, Mayday MY, Sajib MSI, Li LM, Langelier C, Rahman H, Crawford ED, Tato CM, Islam M, Juan YF, ... ... DeRisi JL, et al. Unbiased Metagenomic Sequencing for Pediatric Meningitis in Bangladesh Reveals Neuroinvasive Chikungunya Virus Outbreak and Other Unrealized Pathogens. Mbio. 10. PMID 31848287 DOI: 10.1128/Mbio.02877-19 |
0.218 |
|
| 2019 |
Mayday MY, Khan LM, Chow ED, Zinter MS, DeRisi JL. Miniaturization and optimization of 384-well compatible RNA sequencing library preparation. Plos One. 14: e0206194. PMID 30629604 DOI: 10.1371/journal.pone.0206194 |
0.217 |
|
| 2001 |
Carroll AS, Bishop AC, DeRisi JL, Shokat KM, O'Shea EK. Chemical inhibition of the Pho85 cyclin-dependent kinase reveals a role in the environmental stress response. Proceedings of the National Academy of Sciences of the United States of America. 98: 12578-83. PMID 11675494 DOI: 10.1073/Pnas.211195798 |
0.216 |
|
| 2020 |
Hao S, Abdelghany M, Lyden A, Sit R, Tan M, Tato CM, DeRisi JL, Miller S, Doernberg SB, Langelier C. Genomic Profiling of Evolving Daptomycin Resistance in a Patient with Recurrent Sepsis. Antimicrobial Agents and Chemotherapy. PMID 32601156 DOI: 10.1128/AAC.00961-20 |
0.214 |
|
| 2017 |
Faden DL, Thomas S, Cantalupo PG, Agrawal N, Myers J, DeRisi J. Multi-modality analysis supports APOBEC as a major source of mutations in head and neck squamous cell carcinoma. Oral Oncology. 74: 8-14. PMID 29103756 DOI: 10.1016/J.Oraloncology.2017.09.002 |
0.213 |
|
| 1999 |
DeRisi JL. Yeast genomics and other DNA microarray exploits Nature Genetics. 23: 9-9. DOI: 10.1038/14216 |
0.213 |
|
| 2023 |
Chu VT, Nafees S, Waltari E, McNeil N, Caughell C, Sanchez-Guerrero E, Wang L, Stanley K, Cunningham G, Wong J, Phelps M, Tato CM, Miller S, DeRisi JL, Yokoe DS, et al. Whole-genome sequencing rule-out of suspected hospital-onset outbreaks. Infection Control and Hospital Epidemiology. 1-3. PMID 37308466 DOI: 10.1017/ice.2023.85 |
0.211 |
|
| 2020 |
Chamie G, Marquez C, Crawford E, Peng J, Petersen M, Schwab D, Schwab J, Martinez J, Es DJ, Black D, Gandhi M, Kerkhoff AD, Jain V, Sergi F, Jacobo J, ... ... DeRisi J, et al. SARS-CoV-2 Community Transmission disproportionately affects Latinx population during Shelter-in-Place in San Francisco. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 32821935 DOI: 10.1093/Cid/Ciaa1234 |
0.21 |
|
| 2023 |
Osborne CM, Langelier C, Kamm J, Williamson K, Ambroggio L, Reeder RW, Locandro C, Kirk Harris J, Wagner BD, Maddux AB, Caldera S, Lyden A, Soesanto V, Simões EAF, Leroue MK, ... ... DeRisi J, et al. Viral Detection by Reverse Transcriptase Polymerase Chain Reaction in Upper Respiratory Tract and Metagenomic RNA Sequencing in Lower Respiratory Tract in Critically Ill Children With Suspected Lower Respiratory Tract Infection. Pediatric Critical Care Medicine : a Journal of the Society of Critical Care Medicine and the World Federation of Pediatric Intensive and Critical Care Societies. PMID 37732845 DOI: 10.1097/PCC.0000000000003336 |
0.21 |
|
| 2012 |
Holmes TC, May AE, Zaleta-Rivera K, Ruby JG, Skewes-Cox P, Fischbach MA, DeRisi JL, Iwatsuki M, ÅŒmura S, Khosla C. Molecular insights into the biosynthesis of guadinomine: a type III secretion system inhibitor. Journal of the American Chemical Society. 134: 17797-806. PMID 23030602 DOI: 10.1021/ja308622d |
0.206 |
|
| 2022 |
Tana MM, Klepper A, Lyden A, Pisco AO, Phelps M, McGee B, Green K, Feng S, DeRisi J, Crawford ED, Lammert CS. Transcriptomic profiling of blood from autoimmune hepatitis patients reveals potential mechanisms with implications for management. Plos One. 17: e0264307. PMID 35312680 DOI: 10.1371/journal.pone.0264307 |
0.204 |
|
| 2018 |
Langelier C, Kalantar KL, Moazed F, Wilson MR, Crawford ED, Deiss T, Belzer A, Bolourchi S, Caldera S, Fung M, Jauregui A, Malcolm K, Lyden A, Khan L, Vessel K, ... ... DeRisi JL, et al. Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults. Proceedings of the National Academy of Sciences of the United States of America. PMID 30482864 DOI: 10.1073/Pnas.1809700115 |
0.203 |
|
| 2016 |
Zylberberg M, Van Hemert C, Dumbacher JP, Handel CM, Tihan T, DeRisi JL. Novel Picornavirus Associated with Avian Keratin Disorder in Alaskan Birds. Mbio. 7. PMID 27460795 DOI: 10.1128/Mbio.00874-16 |
0.202 |
|
| 2012 |
Vale RD, DeRisi J, Phillips R, Mullins RD, Waterman C, Mitchison TJ. Graduate education. Interdisciplinary graduate training in teaching labs. Science (New York, N.Y.). 338: 1542-3. PMID 23258877 DOI: 10.1126/Science.1216570 |
0.2 |
|
| 2022 |
Bohl JA, Lay S, Chea S, Ahyong V, Parker DM, Gallagher S, Fintzi J, Man S, Ponce A, Sreng S, Kong D, Oliveira F, Kalantar K, Tan M, Fahsbender L, ... ... DeRisi JL, et al. Discovering disease-causing pathogens in resource-scarce Southeast Asia using a global metagenomic pathogen monitoring system. Proceedings of the National Academy of Sciences of the United States of America. 119: e2115285119. PMID 35238677 DOI: 10.1073/pnas.2115285119 |
0.2 |
|
| 2022 |
Kalantar KL, Neyton L, Abdelghany M, Mick E, Jauregui A, Caldera S, Serpa PH, Ghale R, Albright J, Sarma A, Tsitsiklis A, Leligdowicz A, Christenson SA, Liu K, Kangelaris KN, ... ... Derisi JL, et al. Integrated host-microbe plasma metagenomics for sepsis diagnosis in a prospective cohort of critically ill adults. Nature Microbiology. 7: 1805-1816. PMID 36266337 DOI: 10.1038/s41564-022-01237-2 |
0.199 |
|
| 2020 |
Fozouni P, Son S, Díaz de León Derby M, Knott GJ, Gray CN, D'Ambrosio MV, Zhao C, Switz NA, Kumar GR, Stephens SI, Boehm D, Tsou CL, Shu J, Bhuiya A, Armstrong M, ... ... DeRisi JL, et al. Amplification-free detection of SARS-CoV-2 with CRISPR-Cas13a and mobile phone microscopy. Cell. PMID 33306959 DOI: 10.1016/j.cell.2020.12.001 |
0.199 |
|
| 2014 |
Wilson MR, Naccache SN, Samayoa E, Biagtan M, Bashir H, Yu G, Salamat SM, Somasekar S, Federman S, Miller S, Sokolic R, Garabedian E, Candotti F, Buckley RH, Reed KD, ... ... DeRisi JL, et al. Actionable diagnosis of neuroleptospirosis by next-generation sequencing. The New England Journal of Medicine. 370: 2408-17. PMID 24896819 DOI: 10.1056/Nejmoa1401268 |
0.198 |
|
| 2002 |
Nautiyal S, DeRisi JL, Blackburn EH. The genome-wide expression response to telomerase deletion in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 99: 9316-21. PMID 12084816 DOI: 10.1073/Pnas.142162499 |
0.198 |
|
| 2022 |
Serpa PH, Deng X, Abdelghany M, Crawford E, Malcolm K, Caldera S, Fung M, McGeever A, Kalantar KL, Lyden A, Ghale R, Deiss T, Neff N, Miller SA, Doernberg SB, ... ... DeRisi JL, et al. Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections. Genome Medicine. 14: 74. PMID 35818068 DOI: 10.1186/s13073-022-01072-4 |
0.197 |
|
| 2007 |
Xiao M, Phong A, Ha C, Chan TF, Cai D, Leung L, Wan E, Kistler AL, DeRisi JL, Selvin PR, Kwok PY. Rapid DNA mapping by fluorescent single molecule detection. Nucleic Acids Research. 35: e16. PMID 17175538 DOI: 10.1093/Nar/Gkl1044 |
0.196 |
|
| 2017 |
Wilson MR, Suan D, Duggins A, Schubert RD, Khan LM, Sample HA, Zorn KC, Rodrigues Hoffman A, Blick A, Shingde M, DeRisi JL. A Novel Cause of Chronic Viral Meningoencephalitis: Cache Valley Virus. Annals of Neurology. PMID 28628941 DOI: 10.1002/ana.24982 |
0.196 |
|
| 2018 |
Kalantar K, LaHue SC, DeRisi JL, Sample HA, Contag CA, Josephson SA, Wilson MR, Douglas VC. Whole-Genome mRNA Gene Expression Differs Between Patients With and Without Delirium. Journal of Geriatric Psychiatry and Neurology. 891988718785774. PMID 29991314 DOI: 10.1177/0891988718785774 |
0.194 |
|
| 2002 |
Rathod PK, Ganesan K, Hayward RE, Bozdech Z, DeRisi JL. DNA microarrays for malaria. Trends in Parasitology. 18: 39-45. PMID 11850013 DOI: 10.1016/S1471-4922(01)02153-5 |
0.193 |
|
| 1994 |
Peck LJ, Bartilson M, DeRisi JL. Bead-shift isolation of protein--DNA complexes on a 5S RNA gene. Nucleic Acids Research. 22: 443-9. PMID 8127682 |
0.192 |
|
| 2023 |
Sunshine S, Puschnik AS, Replogle JM, Laurie MT, Liu J, Zha BS, Nuñez JK, Byrum JR, McMorrow AH, Frieman MB, Winkler J, Qiu X, Rosenberg OS, Leonetti MD, Ye CJ, ... ... DeRisi JL, et al. Systematic functional interrogation of SARS-CoV-2 host factors using Perturb-seq. Nature Communications. 14: 6245. PMID 37803001 DOI: 10.1038/s41467-023-41788-4 |
0.191 |
|
| 2019 |
Wilson MR, Sample HA, Zorn KC, Arevalo S, Yu G, Neuhaus J, Federman S, Stryke D, Briggs B, Langelier C, Berger A, Douglas V, Josephson SA, Chow FC, Fulton BD, ... DeRisi JL, et al. Clinical Metagenomic Sequencing for Diagnosis of Meningitis and Encephalitis. The New England Journal of Medicine. 380: 2327-2340. PMID 31189036 DOI: 10.1056/Nejmoa1803396 |
0.19 |
|
| 2020 |
Mick E, Kamm J, Pisco AO, Ratnasiri K, Babik JM, Castañeda G, DeRisi JL, Detweiler AM, Hao SL, Kangelaris KN, Kumar GR, Li LM, Mann SA, Neff N, Prasad PA, et al. Upper airway gene expression reveals suppressed immune responses to SARS-CoV-2 compared with other respiratory viruses. Nature Communications. 11: 5854. PMID 33203890 DOI: 10.1038/s41467-020-19587-y |
0.189 |
|
| 2021 |
Deere JD, Carroll TD, Dutra J, Fritts L, Sammak RL, Yee JL, Olstad KJ, Reader JR, Kistler A, Kamm J, Di Germanio C, Shaan Lakshmanappa Y, Elizaldi SR, Roh JW, Simmons G, ... ... DeRisi J, et al. SARS-CoV-2 Infection of Rhesus Macaques Treated Early with Human COVID-19 Convalescent Plasma. Microbiology Spectrum. e0139721. PMID 34817208 DOI: 10.1128/Spectrum.01397-21 |
0.189 |
|
| 2007 |
Kistler A, Avila PC, Rouskin S, Wang D, Ward T, Yagi S, Schnurr D, Ganem D, DeRisi JL, Boushey HA. Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity. The Journal of Infectious Diseases. 196: 817-25. PMID 17703411 DOI: 10.1086/520816 |
0.189 |
|
| 2016 |
Wilson MR, Zimmermann LL, Crawford ED, Sample HA, Soni P, Baker A, Khan LM, DeRisi JL. Acute West Nile virus meningoencephalitis diagnosed via metagenomic deep sequencing of cerebrospinal fluid in a renal transplant patient. American Journal of Transplantation : Official Journal of the American Society of Transplantation and the American Society of Transplant Surgeons. PMID 27647685 DOI: 10.1111/Ajt.14058 |
0.189 |
|
| 2021 |
Sarma A, Christenson S, Mick E, Deiss T, DeVoe C, Pisco A, Ghale R, Jauregui A, Byrne A, Moazed F, Spottiswoode N, Sinha P, Zha B, Neff N, Tan M, ... ... DeRisi J, et al. COVID-19 ARDS is characterized by a dysregulated host response that differs from cytokine storm and is modified by dexamethasone. Research Square. PMID 33469573 DOI: 10.21203/rs.3.rs-141578/v1 |
0.188 |
|
| 2018 |
Ramachandran PS, Cresswell FV, Meya DB, Crawford ED, DeRisi JL, Boulware DR, Wilson MR. Detection of Cryptococcus DNA by metagenomic next-generation sequencing in symptomatic cryptococcal antigenemia. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 30535266 DOI: 10.1093/Cid/Ciy1024 |
0.187 |
|
| 2019 |
Schubert RD, Hawes IA, Ramachandran PS, Ramesh A, Crawford ED, Pak JE, Wu W, Cheung CK, O'Donovan BD, Tato CM, Lyden A, Tan M, Sit R, Sowa GA, Sample HA, ... ... DeRisi JL, et al. Pan-viral serology implicates enteroviruses in acute flaccid myelitis. Nature Medicine. PMID 31636453 DOI: 10.1038/S41591-019-0613-1 |
0.186 |
|
| 2017 |
Stenglein MD, Sanchez-Migallon Guzman D, Garcia VE, Layton ML, Hoon-Hanks LL, Boback SM, Keel MK, Drazenovich T, Hawkins MG, DeRisi JL. Differential disease susceptibility in experimentally reptarenavirus infected boa constrictors and ball pythons. Journal of Virology. PMID 28515291 DOI: 10.1128/Jvi.00451-17 |
0.186 |
|
| 2023 |
Spottiswoode N, Hao S, Sanchez-Guerrero E, Detweiler AM, Mekonen H, Neff N, Macmillan H, Schwartz BS, Engel J, DeRisi JL, Miller SA, Langelier CR. In host evolution of beta lactam resistance during active treatment for bacteremia. Frontiers in Cellular and Infection Microbiology. 13: 1241608. PMID 37712060 DOI: 10.3389/fcimb.2023.1241608 |
0.186 |
|
| 2017 |
Doan T, Acharya NR, Pinsky BA, Sahoo MK, Chow ED, Banaei N, Budvytiene I, Cevallos V, Zhong L, Zhou Z, Lietman TM, DeRisi JL. Metagenomic DNA Sequencing for the Diagnosis of Intraocular Infections. Ophthalmology. PMID 28526549 DOI: 10.1016/J.Ophtha.2017.03.045 |
0.185 |
|
| 2020 |
Kalantar KL, Carvalho T, de Bourcy CFA, Dimitrov B, Dingle G, Egger R, Han J, Holmes OB, Juan YF, King R, Kislyuk A, Lin MF, Mariano M, Morse T, Reynoso LV, ... ... DeRisi JL, et al. IDseq-An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring. Gigascience. 9. PMID 33057676 DOI: 10.1093/gigascience/giaa111 |
0.185 |
|
| 2022 |
Liu J, Knopp KA, Rackaityte E, Wang CY, Laurie MT, Sunshine S, Puschnik AS, DeRisi JL. Genome-Wide Knockout Screen Identifies Human Sialomucin CD164 as an Essential Entry Factor for Lymphocytic Choriomeningitis Virus. Mbio. e0020522. PMID 35502904 DOI: 10.1128/mbio.00205-22 |
0.185 |
|
| 2015 |
Wu W, Herrera Z, Ebert D, Baska K, Cho SH, DeRisi JL, Yeh E. A chemical rescue screen identifies a Plasmodium falciparum apicoplast inhibitor targeting MEP isoprenoid precursor biosynthesis. Antimicrobial Agents and Chemotherapy. 59: 356-64. PMID 25367906 DOI: 10.1128/Aac.03342-14 |
0.184 |
|
| 2015 |
Radoshitzky SR, Bào Y, Buchmeier MJ, Charrel RN, Clawson AN, Clegg CS, DeRisi JL, Emonet S, Gonzalez JP, Kuhn JH, Lukashevich IS, Peters CJ, Romanowski V, Salvato MS, Stenglein MD, et al. Past, present, and future of arenavirus taxonomy. Archives of Virology. 160: 1851-74. PMID 25935216 DOI: 10.1007/S00705-015-2418-Y |
0.184 |
|
| 2007 |
Dong B, Kim S, Hong S, Das Gupta J, Malathi K, Klein EA, Ganem D, Derisi JL, Chow SA, Silverman RH. An infectious retrovirus susceptible to an IFN antiviral pathway from human prostate tumors. Proceedings of the National Academy of Sciences of the United States of America. 104: 1655-60. PMID 17234809 DOI: 10.1073/Pnas.0610291104 |
0.184 |
|
| 2021 |
van der Wijst MGP, Vazquez SE, Hartoularos GC, Bastard P, Grant T, Bueno R, Lee DS, Greenland JR, Sun Y, Perez R, Ogorodnikov A, Ward A, Mann SA, Lynch KL, Yun C, ... ... Derisi JL, et al. Longitudinal single-cell epitope and RNA-sequencing reveals the immunological impact of type 1 interferon autoantibodies in critical COVID-19. Biorxiv : the Preprint Server For Biology. PMID 33758859 DOI: 10.1101/2021.03.09.434529 |
0.179 |
|
| 2018 |
Laurie MT, White CV, Retallack H, Wu W, Moser MS, Sakanari JA, Ang K, Wilson C, Arkin MR, DeRisi JL. Functional Assessment of 2,177 U.S. and International Drugs Identifies the Quinoline Nitroxoline as a Potent Amoebicidal Agent against the Pathogen . Mbio. 9. PMID 30377287 DOI: 10.1128/Mbio.02051-18 |
0.176 |
|
| 2011 |
Yeh E, DeRisi JL. Chemical rescue of malaria parasites lacking an apicoplast defines organelle function in blood-stage Plasmodium falciparum. Plos Biology. 9: e1001138. PMID 21912516 DOI: 10.1371/Journal.Pbio.1001138 |
0.175 |
|
| 2023 |
Mick E, Tsitsiklis A, Kamm J, Kalantar KL, Caldera S, Lyden A, Tan M, Detweiler AM, Neff N, Osborne CM, Williamson KM, Soesanto V, Leroue M, Maddux AB, Simões EA, ... ... DeRisi JL, et al. Integrated host/microbe metagenomics enables accurate lower respiratory tract infection diagnosis in critically ill children. The Journal of Clinical Investigation. 133. PMID 37009900 DOI: 10.1172/JCI165904 |
0.175 |
|
| 2021 |
Rajan JV, McCracken M, Mandel-Brehm C, Gromowski G, Pollett S, Jarman R, DeRisi JL. Phage display demonstrates durable differences in serological profile by route of inoculation in primary infections of non-human primates with Dengue Virus 1. Scientific Reports. 11: 10823. PMID 34031504 DOI: 10.1038/s41598-021-90318-z |
0.175 |
|
| 2010 |
Raghav R, Taylor M, Delay J, Ojkic D, Pearl DL, Kistler AL, Derisi JL, Ganem D, Smith DA. Avian bornavirus is present in many tissues of psittacine birds with histopathologic evidence of proventricular dilatation disease. Journal of Veterinary Diagnostic Investigation : Official Publication of the American Association of Veterinary Laboratory Diagnosticians, Inc. 22: 495-508. PMID 20622218 DOI: 10.1177/104063871002200402 |
0.175 |
|
| 2003 |
Smith CD, Smith DL, DeRisi JL, Blackburn EH. Telomeric protein distributions and remodeling through the cell cycle in Saccharomyces cerevisiae. Molecular Biology of the Cell. 14: 556-70. PMID 12589054 DOI: 10.1091/Mbc.E02-08-0457 |
0.171 |
|
| 2019 |
Mulliken JS, Langelier C, Budak JZ, Miller S, Dynerman D, Hao S, Li LM, Crawford E, Lyden A, Woodworth MH, DeRisi JL, Desmond E, Browne C, Luu A, Grandis DJ, et al. : Clinical Characteristics and Draft Genome of an Emerging Pathogen in Native and Prosthetic Valve Endocarditis. Open Forum Infectious Diseases. 6: ofz134. PMID 31024974 DOI: 10.1093/Ofid/Ofz134 |
0.171 |
|
| 2016 |
Doan T, Wilson MR, Crawford ED, Chow ED, Khan LM, Knopp KA, O'Donovan BD, Xia D, Hacker JK, Stewart JM, Gonzales JA, Acharya NR, DeRisi JL. Erratum to: Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens. Genome Medicine. 8: 123. PMID 27876088 DOI: 10.1186/S13073-016-0377-X |
0.169 |
|
| 2022 |
Soldatos A, Nutman TB, Johnson T, Dowell SF, Sejvar JJ, Wilson MR, DeRisi JL, Inati SK, Groden C, Evans C, O'Connell EM, Toliva BO, Aceng JR, Aryek-Kwe J, Toro C, et al. Genomic analysis, immunomodulation and deep phenotyping of patients with nodding syndrome. Brain : a Journal of Neurology. PMID 36181424 DOI: 10.1093/brain/awac357 |
0.167 |
|
| 2022 |
Vazquez SE, Mann SA, Bodansky A, Kung AF, Quandt Z, Ferré EMN, Landegren N, Eriksson D, Bastard P, Zhang SY, Liu J, Mitchell A, Proekt I, Yu D, Mandel-Brehm C, ... ... DeRisi JL, et al. Autoantibody discovery across monogenic, acquired, and COVID19-associated autoimmunity with scalable PhIP-Seq. Elife. 11. PMID 36300623 DOI: 10.7554/eLife.78550 |
0.167 |
|
| 2022 |
Vazquez SE, Mann SA, Bodansky A, Kung AF, Quandt Z, Ferré EMN, Landegren N, Eriksson D, Bastard P, Zhang SY, Liu J, Mitchell A, Mandel-Brehm C, Miao B, Sowa G, ... ... DeRisi JL, et al. Autoantibody discovery across monogenic, acquired, and COVID19-associated autoimmunity with scalable PhIP-Seq. Biorxiv : the Preprint Server For Biology. PMID 35350199 DOI: 10.1101/2022.03.23.485509 |
0.167 |
|
| 2015 |
O'Donoghue AJ, Knudsen GM, Beekman C, Perry JA, Johnson AD, DeRisi JL, Craik CS, Bennett RJ. Destructin-1 is a collagen-degrading endopeptidase secreted by Pseudogymnoascus destructans, the causative agent of white-nose syndrome. Proceedings of the National Academy of Sciences of the United States of America. 112: 7478-83. PMID 25944934 DOI: 10.1073/Pnas.1507082112 |
0.166 |
|
| 1997 |
Iver V, Derisi J, Eisen M, Ross D, Soellman P, Hudson J, Schulet G, Lashkari D, Shalon SP, Botstein D, Brown P. Use of DNA microarrays to monitor differential gene expression in yeast and humans Faseb Journal. 11: A1125. |
0.165 |
|
| 2023 |
Bodansky A, Wang CY, Saxena A, Mitchell A, Kung AF, Takahashi S, Anglin K, Huang B, Hoh R, Lu S, Goldberg SA, Romero J, Tran B, Kirtikar R, Grebe H, ... ... DeRisi JL, et al. Autoantigen profiling reveals a shared post-COVID signature in fully recovered and long COVID patients. Jci Insight. 8. PMID 37288661 DOI: 10.1172/jci.insight.169515 |
0.164 |
|
| 2020 |
O'Donovan B, Mandel-Brehm C, Vazquez SE, Liu J, Parent AV, Anderson MS, Kassimatis T, Zekeridou A, Hauser SL, Pittock SJ, Chow E, Wilson MR, DeRisi JL. High-resolution epitope mapping of anti-Hu and anti-Yo autoimmunity by programmable phage display. Brain Communications. 2: fcaa059. PMID 32954318 DOI: 10.1093/braincomms/fcaa059 |
0.162 |
|
| 2012 |
Caro F, Miller MG, DeRisi JL. Plate-based transfection and culturing technique for genetic manipulation of Plasmodium falciparum. Malaria Journal. 11: 22. PMID 22257490 DOI: 10.1186/1475-2875-11-22 |
0.157 |
|
| 2023 |
Popova G, Retallack H, Kim CN, Wang A, Shin D, DeRisi JL, Nowakowski T. Rubella virus tropism and single-cell responses in human primary tissue and microglia-containing organoids. Elife. 12. PMID 37470786 DOI: 10.7554/eLife.87696 |
0.156 |
|
| 2020 |
Ramesh A, Schubert RD, Greenfield AL, Dandekar R, Loudermilk R, Sabatino JJ, Koelzer MT, Tran EB, Koshal K, Kim K, Pröbstel AK, Banerji D, Guo CY, Green AJ, ... ... DeRisi JL, et al. A pathogenic and clonally expanded B cell transcriptome in active multiple sclerosis. Proceedings of the National Academy of Sciences of the United States of America. PMID 32859762 DOI: 10.1073/Pnas.2008523117 |
0.155 |
|
| 2018 |
Wilson MR, O'Donovan BD, Gelfand JM, Sample HA, Chow FC, Betjemann JP, Shah MP, Richie MB, Gorman MP, Hajj-Ali RA, Calabrese LH, Zorn KC, Chow ED, Greenlee JE, Blum JH, ... ... DeRisi JL, et al. Chronic Meningitis Investigated via Metagenomic Next-Generation Sequencing. Jama Neurology. PMID 29710329 DOI: 10.1001/Jamaneurol.2018.0463 |
0.155 |
|
| 2002 |
Polson AG, Wang D, DeRisi J, Ganem D. Modulation of host gene expression by the constitutively active G protein-coupled receptor of Kaposi's sarcoma-associated herpesvirus. Cancer Research. 62: 4525-30. PMID 12154065 |
0.154 |
|
| 2021 |
Tsitsiklis A, Zha B, Byrne A, DeVoe C, Levan S, Rackaityte E, Sunshine S, Mick E, Ghale R, Jauregui A, Neff N, Sarma A, Serpa P, Deiss T, Kistler A, ... ... DeRisi J, et al. Impaired immune signaling and changes in the lung microbiome precede secondary bacterial pneumonia in COVID-19. Research Square. PMID 34013247 DOI: 10.21203/rs.3.rs-380803/v1 |
0.153 |
|
| 2021 |
Tsitsiklis A, Zha BS, Byrne A, Devoe C, Levan S, Rackaityte E, Sunshine S, Mick E, Ghale R, Jauregui A, Sarma A, Neff N, Serpa PH, Deiss TJ, Kistler A, ... ... DeRisi JL, et al. Impaired antibacterial immune signaling and changes in the lung microbiome precede secondary bacterial pneumonia in COVID-19. Medrxiv : the Preprint Server For Health Sciences. PMID 33791731 DOI: 10.1101/2021.03.23.21253487 |
0.153 |
|
| 2023 |
Schrom J, Marquez C, Wang CY, Saxena A, Mitchell AM, Ribeiro S, Pilarowski G, Nakamura R, Rojas S, Black D, Contreras Oseguera MG, Diaz EC, Payan J, Rojas S, Jones D, ... ... DeRisi J, et al. Field assessment of BinaxNOW antigen tests as COVID-19 treatment entry point at a community testing site in San Francisco during evolving omicron surges. Plos One. 18: e0283576. PMID 36961855 DOI: 10.1371/journal.pone.0283576 |
0.153 |
|
| 2016 |
Ahyong V, Sheridan CM, Leon KE, Witchley JN, Diep J, DeRisi JL. Identification of Plasmodium falciparum specific translation inhibitors from the MMV Malaria Box using a high throughput in vitro translation screen. Malaria Journal. 15: 173. PMID 26987601 DOI: 10.1186/s12936-016-1231-8 |
0.153 |
|
| 2020 |
Leon KE, Schubert RD, Casas-Alba D, Hawes IA, Ramachandran PS, Ramesh A, Pak JE, Wu W, Cheung CK, Crawford ED, Khan LM, Launes C, Sample HA, Zorn KC, Cabrerizo M, ... ... DeRisi JL, et al. Genomic and serologic characterization of enterovirus A71 brainstem encephalitis. Neurology(R) Neuroimmunology & Neuroinflammation. 7. PMID 32139440 DOI: 10.1212/Nxi.0000000000000703 |
0.152 |
|
| 2023 |
Zinter MS, Dvorak CC, Mayday MY, Reyes G, Simon MR, Pearce EM, Kim H, Shaw PJ, Rowan CM, Auletta JJ, Martin PL, Godder K, Duncan CN, Lalefar NR, Kreml EM, ... ... DeRisi JL, et al. Pulmonary microbiome and transcriptome signatures reveal distinct pathobiologic states associated with mortality in two cohorts of pediatric stem cell transplant patients. Medrxiv : the Preprint Server For Health Sciences. PMID 38077035 DOI: 10.1101/2023.11.29.23299130 |
0.152 |
|
| 2020 |
Zamecnik CR, Rajan JV, Yamauchi KA, Mann SA, Loudermilk RP, Sowa GM, Zorn KC, Alvarenga BD, Gaebler C, Caskey M, Stone M, Norris PJ, Gu W, Chiu CY, Ng D, ... ... DeRisi JL, et al. ReScan, a Multiplex Diagnostic Pipeline, Pans Human Sera for SARS-CoV-2 Antigens. Cell Reports. Medicine. 100123. PMID 32995758 DOI: 10.1016/j.xcrm.2020.100123 |
0.152 |
|
| 2018 |
Mavor D, Barlow KA, Asarnow D, Birman Y, Britain D, Chen W, Green EM, Kenner LR, Mensa B, Morinishi LS, Nelson CA, Poss EM, Suresh P, Tian R, Arhar T, ... ... DeRisi JL, et al. Extending chemical perturbations of the ubiquitin fitness landscape in a classroom setting reveals new constraints on sequence tolerance. Biology Open. 7. PMID 30037883 DOI: 10.1242/Bio.036103 |
0.151 |
|
| 2009 |
Niles JC, Derisi JL, Marletta MA. Inhibiting Plasmodium falciparum growth and heme detoxification pathway using heme-binding DNA aptamers. Proceedings of the National Academy of Sciences of the United States of America. 106: 13266-71. PMID 19633187 DOI: 10.1073/Pnas.0906370106 |
0.151 |
|
| 2017 |
Langelier C, Zinter MS, Kalantar K, Yanik GA, Christenson S, O'Donovan B, White C, Wilson M, Sapru A, Dvorak CC, Miller S, Chiu CY, DeRisi JL. Metagenomic Sequencing Detects Respiratory Pathogens in Hematopoietic Cellular Transplant Patients. American Journal of Respiratory and Critical Care Medicine. PMID 28686513 DOI: 10.1164/rccm.201706-1097LE |
0.148 |
|
| 2022 |
Kodani A, Knopp KA, Di Lullo E, Retallack H, Kriegstein AR, DeRisi JL, Reiter JF. Zika virus alters centrosome organization to suppress the innate immune response. Embo Reports. e52211. PMID 35793002 DOI: 10.15252/embr.202052211 |
0.147 |
|
| 2023 |
Upadhyay V, Yoon YM, Vazquez SE, Velez TE, Jones KD, Lee CT, Law CS, Wolters PJ, Lee S, Yang MM, Farrand E, Noth I, Strek ME, Anderson M, DeRisi J, et al. PhIP-Seq uncovers novel autoantibodies and unique endotypes in interstitial lung disease. Biorxiv : the Preprint Server For Biology. PMID 37163026 DOI: 10.1101/2023.04.24.538091 |
0.146 |
|
| 2018 |
Sheridan CM, Garcia VE, Ahyong V, DeRisi JL. The Plasmodium falciparum cytoplasmic translation apparatus: a promising therapeutic target not yet exploited by clinically approved anti-malarials. Malaria Journal. 17: 465. PMID 30541569 DOI: 10.1186/s12936-018-2616-7 |
0.146 |
|
| 2012 |
Kim CC, Nelson CS, Wilson EB, Hou B, DeFranco AL, DeRisi JL. Splenic red pulp macrophages produce type I interferons as early sentinels of malaria infection but are dispensable for control. Plos One. 7: e48126. PMID 23144737 DOI: 10.1371/Journal.Pone.0048126 |
0.144 |
|
| 2014 |
Slabodnick MM, Ruby JG, Dunn JG, Feldman JL, DeRisi JL, Marshall WF. The kinase regulator mob1 acts as a patterning protein for stentor morphogenesis. Plos Biology. 12: e1001861. PMID 24823688 DOI: 10.1371/Journal.Pbio.1001861 |
0.142 |
|
| 2016 |
Retallack H, Di Lullo E, Arias C, Knopp KA, Laurie MT, Sandoval-Espinosa C, Mancia Leon WR, Krencik R, Ullian EM, Spatazza J, Pollen AA, Mandel-Brehm C, Nowakowski TJ, Kriegstein AR, DeRisi JL. Zika virus cell tropism in the developing human brain and inhibition by azithromycin. Proceedings of the National Academy of Sciences of the United States of America. PMID 27911847 DOI: 10.1073/pnas.1618029113 |
0.141 |
|
| 2008 |
Kim CC, Parikh S, Sun JC, Myrick A, Lanier LL, Rosenthal PJ, DeRisi JL. Experimental malaria infection triggers early expansion of natural killer cells. Infection and Immunity. 76: 5873-82. PMID 18824529 DOI: 10.1128/Iai.00640-08 |
0.141 |
|
| 2020 |
Vazquez SE, Ferré EM, Scheel DW, Sunshine S, Miao B, Mandel-Brehm C, Quandt Z, Chan AY, Cheng M, German M, Lionakis M, DeRisi JL, Anderson MS. Identification of novel, clinically correlated autoantigens in the monogenic autoimmune syndrome APS1 by proteome-wide PhIP-Seq. Elife. 9. PMID 32410729 DOI: 10.7554/eLife.55053 |
0.14 |
|
| 2014 |
Koellhoffer JF, Dai Z, Malashkevich VN, Stenglein MD, Liu Y, Toro R, S Harrison J, Chandran K, DeRisi JL, Almo SC, Lai JR. Structural characterization of the glycoprotein GP2 core domain from the CAS virus, a novel arenavirus-like species. Journal of Molecular Biology. 426: 1452-68. PMID 24333483 DOI: 10.1016/J.Jmb.2013.12.009 |
0.14 |
|
| 2019 |
Kalantar KL, Moazed F, Christenson SC, Wilson J, Deiss T, Belzer A, Vessel K, Caldera S, Jauregui A, Bolourchi S, DeRisi JL, Calfee CS, Langelier C. A Metagenomic Comparison of Tracheal Aspirate and Mini-Bronchial Alveolar Lavage for Assessment of Respiratory Microbiota. American Journal of Physiology. Lung Cellular and Molecular Physiology. PMID 30652494 DOI: 10.1152/ajplung.00476.2018 |
0.139 |
|
| 2023 |
Raghavan M, Kalantar KL, Duarte E, Teyssier N, Takahashi S, Kung AF, Rajan JV, Rek J, Tetteh KKA, Drakeley C, Ssewanyana I, Rodriguez-Barraquer I, Greenhouse B, DeRisi JL. Proteome-wide antigenic profiling in Ugandan cohorts identifies associations between age, exposure intensity, and responses to repeat-containing antigens in . Elife. 12. PMID 36790168 DOI: 10.7554/eLife.81401 |
0.138 |
|
| 2024 |
Chu VT, Tsitsiklis A, Mick E, Ambroggio L, Kalantar KL, Glascock A, Osborne CM, Wagner BD, Matthay MA, DeRisi JL, Calfee CS, Mourani PM, Langelier CR. The antibiotic resistance reservoir of the lung microbiome expands with age in a population of critically ill patients. Nature Communications. 15: 92. PMID 38168095 DOI: 10.1038/s41467-023-44353-1 |
0.138 |
|
| 2023 |
Klepper A, Kung A, Vazquez SE, Mitchell A, Mann S, Zorn K, Avila-Vargas I, Kari S, Tekeste M, Castro J, Lee B, Duarte M, Khalili M, Yang M, Wolters P, ... ... DeRisi J, et al. Novel autoantibody targets identified in patients with autoimmune hepatitis (AIH) by PhIP-Seq reveals pathogenic insights. Medrxiv : the Preprint Server For Health Sciences. PMID 37398174 DOI: 10.1101/2023.06.12.23291297 |
0.138 |
|
| 2023 |
Lohse MB, Laurie MT, Levan S, Ziv N, Ennis CL, Nobile CJ, DeRisi J, Johnson AD. Broad sensitivity of strains to quinolones and mechanisms of resistance. Biorxiv : the Preprint Server For Biology. PMID 36824717 DOI: 10.1101/2023.02.16.528905 |
0.137 |
|
| 2023 |
Bodansky A, Wang CY, Saxena A, Mitchell A, Takahashi S, Anglin K, Huang B, Hoh R, Lu S, Goldberg SA, Romero J, Tran B, Kirtikar R, Grebe H, So M, ... ... DeRisi JL, et al. Autoantigen profiling reveals a shared post-COVID signature in fully recovered and Long COVID patients. Medrxiv : the Preprint Server For Health Sciences. PMID 36798288 DOI: 10.1101/2023.02.06.23285532 |
0.137 |
|
| 2022 |
Yek C, Lay S, Bohl JA, Man S, Chea S, Lon C, Ahyong V, Tato CM, DeRisi JL, Sovannaroth S, Manning JE. Case Report: Cambodian National Malaria Surveillance Program Detection of Plasmodium knowlesi. The American Journal of Tropical Medicine and Hygiene. 107: 151-153. PMID 35895370 DOI: 10.4269/ajtmh.22-0039 |
0.137 |
|
| 2023 |
Rackaityte E, Proekt I, Miller HS, Ramesh A, Brooks JF, Kung AF, Mandel-Brehm C, Yu DJ, Zamecnik CR, Bair R, Vazquez SE, Sunshine S, Abram CL, Lowell CA, Rizzuto G, ... ... DeRisi JL, et al. Validation of a murine proteome-wide phage display library for identification of autoantibody specificities. Jci Insight. PMID 37934865 DOI: 10.1172/jci.insight.174976 |
0.136 |
|
| 2022 |
Stoddard G, Black A, Ayscue P, Lu D, Kamm J, Bhatt K, Chan L, Kistler AL, Batson J, Detweiler A, Tan M, Neff N, DeRisi JL, Corrigan J. Using genomic epidemiology of SARS-CoV-2 to support contact tracing and public health surveillance in rural Humboldt County, California. Bmc Public Health. 22: 456. PMID 35255849 DOI: 10.1186/s12889-022-12790-0 |
0.136 |
|
| 2018 |
Zinter MS, Dvorak CC, Mayday MY, Iwanaga K, Ly NP, McGarry ME, Church GD, Faricy LE, Rowan CM, Hume JR, Steiner ME, Crawford ED, Langelier C, Kalantar K, Chow ED, ... ... DeRisi JL, et al. Pulmonary Metagenomic Sequencing Suggests Missed Infections in Immunocompromised Children. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 30239621 DOI: 10.1093/Cid/Ciy802 |
0.135 |
|
| 2019 |
Langelier C, Graves M, Kalantar K, Caldera S, Durrant R, Fisher M, Backman R, Tanner W, DeRisi JL, Leung DT. Microbiome and Antimicrobial Resistance Gene Dynamics in International Travelers. Emerging Infectious Diseases. 25: 1380-1383. PMID 31211676 DOI: 10.3201/Eid2507.181492 |
0.135 |
|
| 2023 |
Lohse MB, Laurie MT, Levan S, Ziv N, Ennis CL, Nobile CJ, DeRisi J, Johnson AD. Broad susceptibility of strains to 8-hydroxyquinolines and mechanisms of resistance. Mbio. e0137623. PMID 37493629 DOI: 10.1128/mbio.01376-23 |
0.134 |
|
| 2023 |
Bartley CM, Ngo TT, Cadwell CR, Harroud A, Schubert RD, Alvarenga BD, Hawes IA, Zorn KC, Hunyh T, Teliska LH, Kung AF, Shah S, Gelfand JM, Chow FC, Rasband MN, ... ... DeRisi JL, et al. Dual ankyrinG and subpial autoantibodies in a man with well-controlled HIV infection with steroid-responsive meningoencephalitis: A case report. Frontiers in Neurology. 13: 1102484. PMID 36756346 DOI: 10.3389/fneur.2022.1102484 |
0.134 |
|
| 2023 |
Rackaityte E, Proekt I, Miller HS, Ramesh A, Brooks JF, Kung AF, Mandel-Brehm C, Yu D, Zamecnik C, Bair R, Vazquez SE, Sunshine S, Abram CL, Lowell CA, Rizzuto G, ... ... DeRisi JL, et al. Validation of a murine proteome-wide phage display library for the identification of autoantibody specificities. Biorxiv : the Preprint Server For Biology. PMID 37066405 DOI: 10.1101/2023.04.07.535899 |
0.133 |
|
| 2022 |
Mandel-Brehm C, Vazquez SE, Liverman C, Cheng M, Quandt Z, Kung AF, Parent A, Miao B, Disse E, Cugnet-Anceau C, Dalle S, Orlova E, Frolova E, Alba D, Michels A, ... ... DeRisi JL, et al. Autoantibodies to Perilipin-1 Define a Subset of Acquired Generalized Lipodystrophy. Diabetes. PMID 35709010 DOI: 10.2337/db21-1172 |
0.133 |
|
| 2020 |
Mourani PM, Sontag MK, Williamson KM, Harris JK, Reeder R, Locandro C, Carpenter TC, Maddux AB, Ziegler K, Simões EAF, Osborne CM, Ambroggio L, Leroue MK, Robertson CE, Langelier C, ... DeRisi JL, et al. Temporal airway microbiome changes related to ventilator associated pneumonia in children. The European Respiratory Journal. PMID 33008935 DOI: 10.1183/13993003.01829-2020 |
0.132 |
|
| 2021 |
Mick E, Tsitsiklis A, Spottiswoode N, Caldera S, Serpa P, Detweiler A, Neff N, Pisco AO, Li L, Retallack H, Ratnasiri K, Williamson K, Soesanto V, Simões E, Kistler A, ... ... DeRisi J, et al. Upper airway gene expression reveals a more robust innate and adaptive immune response to SARS-CoV-2 in children compared with older adults. Research Square. PMID 34462739 DOI: 10.21203/rs.3.rs-784784/v1 |
0.132 |
|
| 2020 |
Sindhe KMV, Wu W, Legac J, Zhang YK, Easom EE, Cooper RA, Plattner JJ, Freund YR, DeRisi JL, Rosenthal PJ. Plasmodium falciparum Resistance to a Lead Benzoxaborole Due to Blocked Compound Activation and Altered Ubiquitination or Sumoylation. Mbio. 11. PMID 31992618 DOI: 10.1128/Mbio.02640-19 |
0.131 |
|
| 2006 |
Newman JR, Ghaemmaghami S, Ihmels J, Breslow DK, Noble M, DeRisi JL, Weissman JS. Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise. Nature. 441: 840-6. PMID 16699522 DOI: 10.1038/Nature04785 |
0.131 |
|
| 2008 |
Chang HH, Falick AM, Carlton PM, Sedat JW, DeRisi JL, Marletta MA. N-terminal processing of proteins exported by malaria parasites. Molecular and Biochemical Parasitology. 160: 107-15. PMID 18534695 DOI: 10.1016/J.Molbiopara.2008.04.011 |
0.13 |
|
| 2019 |
Crawford E, Kamm J, Miller S, Li LM, Caldera S, Lyden A, Yokoe D, Nichols A, Tran NK, Barnard SE, Conner PM, Nambiar A, Zinter MS, Moayeri M, Serpa PH, ... ... DeRisi JL, et al. Investigating Transfusion-Related Sepsis using Culture-Independent Metagenomic Sequencing. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 31563940 DOI: 10.1093/Cid/Ciz960 |
0.129 |
|
| 2022 |
Mick E, Tsitsiklis A, Spottiswoode N, Caldera S, Serpa PH, Detweiler AM, Neff N, Pisco AO, Li LM, Retallack H, Ratnasiri K, Williamson KM, Soesanto V, Simões EAF, Smith C, ... ... DeRisi JL, et al. Upper airway gene expression shows a more robust adaptive immune response to SARS-CoV-2 in children. Nature Communications. 13: 3937. PMID 35803954 DOI: 10.1038/s41467-022-31600-0 |
0.128 |
|
| 2020 |
Pilarowski G, Lebel P, Sunshine S, Liu J, Crawford E, Marquez C, Rubio L, Chamie G, Martinez J, Peng J, Black D, Wu W, Pak J, Laurie MT, Jones D, ... ... DeRisi J, et al. Performance characteristics of a rapid SARS-CoV-2 antigen detection assay at a public plaza testing site in San Francisco. Medrxiv : the Preprint Server For Health Sciences. PMID 33173911 DOI: 10.1101/2020.11.02.20223891 |
0.126 |
|
| 2022 |
Tsitsiklis A, Osborne CM, Kamm J, Williamson K, Kalantar K, Dudas G, Caldera S, Lyden A, Tan M, Neff N, Soesanto V, Harris JK, Ambroggio L, Maddux AB, Carpenter TC, ... ... DeRisi JL, et al. Lower respiratory tract infections in children requiring mechanical ventilation: a multicentre prospective surveillance study incorporating airway metagenomics. The Lancet. Microbe. 3: e284-e293. PMID 35544065 DOI: 10.1016/S2666-5247(21)00304-9 |
0.122 |
|
| 2021 |
Pilarowski G, Lebel P, Sunshine S, Liu J, Crawford E, Marquez C, Rubio L, Chamie G, Martinez J, Peng J, Black D, Wu W, Pak J, Laurie MT, Jones D, ... ... DeRisi J, et al. Performance characteristics of a rapid SARS-CoV-2 antigen detection assay at a public plaza testing site in San Francisco. The Journal of Infectious Diseases. PMID 33394052 DOI: 10.1093/infdis/jiaa802 |
0.122 |
|
| 2020 |
Vanaerschot M, Mann SA, Webber JT, Kamm J, Bell SM, Bell J, Hong SN, Nguyen MP, Chan LY, Bhatt KD, Tan M, Detweiler AM, Espinosa A, Wu W, Batson J, ... ... DeRisi JL, et al. Identification of a polymorphism in the N gene of SARS-CoV-2 that adversely impacts detection by RT-PCR. Journal of Clinical Microbiology. PMID 33067272 DOI: 10.1128/JCM.02369-20 |
0.121 |
|
| 2018 |
Zylberberg M, Van Hemert C, Handel CM, DeRisi JL. Avian keratin disorder of Alaska black-capped chickadees is associated with Poecivirus infection. Virology Journal. 15: 100. PMID 29903045 DOI: 10.1186/S12985-018-1008-5 |
0.121 |
|
| 2021 |
van der Wijst MGP, Vazquez SE, Hartoularos GC, Bastard P, Grant T, Bueno R, Lee DS, Greenland JR, Sun Y, Perez R, Ogorodnikov A, Ward A, Mann SA, Lynch KL, Yun C, ... ... Derisi JL, et al. Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19. Science Translational Medicine. PMID 34429372 DOI: 10.1126/scitranslmed.abh2624 |
0.121 |
|
| 2022 |
Ghale R, Spottiswoode N, Anderson MS, Mitchell A, Wang G, Calfee CS, DeRisi JL, Langelier CR. Prevalence of type-1 interferon autoantibodies in adults with non-COVID-19 acute respiratory failure. Respiratory Research. 23: 354. PMID 36527083 DOI: 10.1186/s12931-022-02283-4 |
0.121 |
|
| 2021 |
Fried WA, Soltero-Rivera M, Ramesh A, Lommer MJ, Arzi B, DeRisi JL, Horst JA. Use of unbiased metagenomic and transcriptomic analyses to investigate the association between feline calicivirus and feline chronic gingivostomatitis in domestic cats. American Journal of Veterinary Research. 82: 381-394. PMID 33904799 DOI: 10.2460/ajvr.82.5.381 |
0.12 |
|
| 2016 |
Mavor D, Barlow K, Thompson S, Barad BA, Bonny AR, Cario CL, Gaskins G, Liu Z, Deming L, Axen SD, Caceres E, Chen W, Cuesta A, Gate R, Green EM, ... ... DeRisi JL, et al. Determination of ubiquitin fitness landscapes under different chemical stresses in a classroom setting. Elife. 5. PMID 27111525 DOI: 10.7554/Elife.15802 |
0.12 |
|
| 2023 |
Bartley CM, Ngo TT, Do LD, Zekeridou A, Dandekar R, Muñiz-Castrillo S, Alvarenga BD, Zorn KC, Tubati A, Pinto AL, Browne WD, Hullett PW, Terrelonge M, Schubert RD, Piquet AL, ... ... DeRisi JL, et al. Detection of High-Risk Paraneoplastic Antibodies Against TRIM9 and TRIM67 proteins. Annals of Neurology. PMID 37632288 DOI: 10.1002/ana.26776 |
0.119 |
|
| 2018 |
Solomon IH, Spera KM, Ryan SL, Helgager J, Andrici J, Zaki SR, Vaitkevicius H, Leon KE, Wilson MR, DeRisi JL, Koo S, Smirnakis SM, De Girolami U. Fatal Powassan Encephalitis (Deer Tick Virus, Lineage II) in a Patient With Fever and Orchitis Receiving Rituximab. Jama Neurology. PMID 29554185 DOI: 10.1001/Jamaneurol.2018.0132 |
0.119 |
|
| 2011 |
Arron ST, Ruby JG, Dybbro E, Ganem D, Derisi JL. Transcriptome sequencing demonstrates that human papillomavirus is not active in cutaneous squamous cell carcinoma. The Journal of Investigative Dermatology. 131: 1745-53. PMID 21490616 DOI: 10.1038/Jid.2011.91 |
0.118 |
|
| 2011 |
Arron ST, Skewes-Cox P, Do PH, Dybbro E, Da Costa M, Palefsky JM, Derisi JL. Validation of a diagnostic microarray for human papillomavirus: coverage of 102 genotypes. Journal of Nucleic Acids. 2011: 756905. PMID 21785699 DOI: 10.4061/2011/756905 |
0.116 |
|
| 2022 |
Lanz TV, Brewer RC, Ho PP, Moon JS, Jude KM, Fernandez D, Fernandes RA, Gomez AM, Nadj GS, Bartley CM, Schubert RD, Hawes IA, Vazquez SE, Iyer M, Zuchero JB, ... ... DeRisi JL, et al. Clonally Expanded B Cells in Multiple Sclerosis Bind EBV EBNA1 and GlialCAM. Nature. PMID 35073561 DOI: 10.1038/s41586-022-04432-7 |
0.112 |
|
| 2023 |
Yoon YM, Velez TE, Upadhyay V, Vazquez SE, Lee CT, Selvan KC, Law CS, Blaine KM, Hollinger MK, Decker DC, Clark MR, Strek ME, Guzy RD, Adegunsoye A, Noth I, ... ... DeRisi JL, et al. Antigenic responses are hallmarks of fibrotic interstitial lung diseases independent of underlying etiologies. Medrxiv : the Preprint Server For Health Sciences. PMID 37214861 DOI: 10.1101/2023.05.08.23289640 |
0.11 |
|
| 2000 |
Takizawa PA, DeRisi JL, Wilhelm JE, Vale RD. Plasma membrane compartmentalization in yeast by messenger RNA transport and a septin diffusion barrier. Science (New York, N.Y.). 290: 341-4. PMID 11030653 DOI: 10.1126/Science.290.5490.341 |
0.11 |
|
| 2020 |
Postels DG, Osei-Tutu L, Seydel KB, Xu Q, Li C, Taylor TE, John CC, Mallewa M, Solomon T, Agbenyega T, Ansong D, Opoka RO, Khan LM, Leon KE, DeRisi JL, et al. Central Nervous System Virus Infection in African Children with Cerebral Malaria. The American Journal of Tropical Medicine and Hygiene. PMID 32342847 DOI: 10.4269/ajtmh.19-0962 |
0.11 |
|
| 2016 |
Postler TS, Clawson AN, Amarasinghe GK, Basler CF, Bavari S, Benkő M, Blasdell KR, Briese T, Buchmeier MJ, Bukreyev A, Calisher CH, Chandran K, Charrel R, Clegg CS, Collins PL, ... ... DeRisi JL, et al. Possibility and Challenges of Conversion of Current Virus Species Names to Linnaean Binomials. Systematic Biology. PMID 27798405 DOI: 10.1093/Sysbio/Syw096 |
0.11 |
|
| 2022 |
Spottiswoode N, Pet D, Kim A, Gruenberg K, Shah M, Ramachandran A, Laurie MT, Zia M, Fouassier C, Boutros CL, Lu R, Zhang Y, Servellita V, Bollen A, Chiu CY, ... ... DeRisi JL, et al. Successful Treatment of Balamuthia mandrillaris Granulomatous Amebic Encephalitis with Nitroxoline. Emerging Infectious Diseases. 29: 197-201. PMID 36573629 DOI: 10.3201/eid2901.221531 |
0.109 |
|
| 2009 |
Arico-Muendel C, Centrella PA, Contonio BD, Morgan BA, O'Donovan G, Paradise CL, Skinner SR, Sluboski B, Svendsen JL, White KF, Debnath A, Gut J, Wilson N, McKerrow JH, DeRisi JL, et al. Antiparasitic activities of novel, orally available fumagillin analogs. Bioorganic & Medicinal Chemistry Letters. 19: 5128-31. PMID 19648008 DOI: 10.1016/J.Bmcl.2009.07.029 |
0.108 |
|
| 2023 |
Chu VT, Tsitsiklis A, Mick E, Ambroggio L, Kalantar KL, Glascock A, Osborne CM, Wagner BD, Matthay MA, DeRisi JL, Calfee CS, Mourani PM, Langelier CR. The antibiotic resistance reservoir of the lung microbiome expands with age. Research Square. PMID 37790384 DOI: 10.21203/rs.3.rs-3283415/v1 |
0.107 |
|
| 2022 |
Remesh SG, Merz GE, Brilot AF, Chio US, Rizo AN, Pospiech TH, Lui I, Laurie MT, Glasgow J, Le CQ, Zhang Y, Diwanji D, Hernandez E, Lopez J, Pawar KI, ... ... DeRisi J, et al. Computational pipeline provides mechanistic understanding of Omicron variant of concern neutralizing engineered ACE2 receptor traps. Biorxiv : the Preprint Server For Biology. PMID 35982665 DOI: 10.1101/2022.08.09.503400 |
0.107 |
|
| 2021 |
Mandel-Brehm C, Fichtner ML, Jiang R, Winton VJ, Vazquez SE, Pham MC, Hoehn KB, Kelleher NL, Nowak RJ, Kleinstein SH, Wilson MR, DeRisi JL, O'Connor KC. Elevated N-Linked Glycosylation of IgG V Regions in Myasthenia Gravis Disease Subtypes. Journal of Immunology (Baltimore, Md. : 1950). PMID 34544801 DOI: 10.4049/jimmunol.2100225 |
0.107 |
|
| 2021 |
Gu W, Rauschecker AM, Hsu E, Zorn KC, Sucu Y, Federman S, Gopez A, Arevalo S, Sample HA, Talevich E, Nguyen ED, Gottschall M, Nourbakhsh B, Gold CA, Cree BAC, ... ... DeRisi JL, et al. Detection of Neoplasms by Metagenomic Next-Generation Sequencing of Cerebrospinal Fluid. Jama Neurology. PMID 34515766 DOI: 10.1001/jamaneurol.2021.3088 |
0.106 |
|
| 2023 |
Remesh SG, Merz GE, Brilot AF, Chio US, Rizo AN, Pospiech TH, Lui I, Laurie MT, Glasgow J, Le CQ, Zhang Y, Diwanji D, Hernandez E, Lopez J, Mehmood H, ... ... DeRisi J, et al. Computational pipeline provides mechanistic understanding of Omicron variant of concern neutralizing engineered ACE2 receptor traps. Structure (London, England : 1993). PMID 36805129 DOI: 10.1016/j.str.2023.01.009 |
0.106 |
|
| 2020 |
Zinter MS, Lindemans C, Versluys B, Mayday MY, Sunshine S, Reyes G, Sirota M, Sapru A, Matthay MA, Kharbanda S, Dvorak CC, Boelens JJJ, DeRisi JL. The Pulmonary Metatranscriptome Prior to Pediatric Hematopoietic Cell Transplantation Identifies Post-HCT Lung Injury. Blood. PMID 33512420 DOI: 10.1182/blood.2020009246 |
0.105 |
|
| 2022 |
Acharya CB, Schrom J, Mitchell AM, Coil DA, Marquez C, Rojas S, Wang CY, Liu J, Pilarowski G, Solis L, Georgian E, Belafsky S, Petersen M, DeRisi J, Michelmore R, et al. Viral Load Among Vaccinated and Unvaccinated, Asymptomatic and Symptomatic Persons Infected With the SARS-CoV-2 Delta Variant. Open Forum Infectious Diseases. 9: ofac135. PMID 35479304 DOI: 10.1093/ofid/ofac135 |
0.105 |
|
| 2017 |
Ludington WB, Seher TD, Applegate O, Li X, Kliegman JI, Langelier C, Atwill ER, Harter T, DeRisi JL. Assessing biosynthetic potential of agricultural groundwater through metagenomic sequencing: A diverse anammox community dominates nitrate-rich groundwater. Plos One. 12: e0174930. PMID 28384184 DOI: 10.1371/Journal.Pone.0174930 |
0.105 |
|
| 2024 |
Spottiswoode N, Haston JC, Hanners NW, Gruenberg K, Kim A, DeRisi JL, Wilson MR. Challenges and advances in the medical treatment of granulomatous amebic encephalitis. Therapeutic Advances in Infectious Disease. 11: 20499361241228340. PMID 38312848 DOI: 10.1177/20499361241228340 |
0.102 |
|
| 2019 |
Mandel-Brehm C, Retallack H, Knudsen GM, Yamana A, Hajj-Ali RA, Calabrese LH, Tihan T, Sample HA, Zorn KC, Gorman MP, Madan Cohen J, Sreih AG, Marcus JF, Josephson SA, Douglas VC, ... ... DeRisi JL, et al. Exploratory proteomic analysis implicates the alternative complement cascade in primary CNS vasculitis. Neurology. PMID 31270218 DOI: 10.1212/Wnl.0000000000007850 |
0.098 |
|
| 2023 |
Le Voyer T, Parent AV, Liu X, Cederholm A, Gervais A, Rosain J, Nguyen T, Perez Lorenzo M, Rackaityte E, Rinchai D, Zhang P, Bizien L, Hancioglu G, Ghillani-Dalbin P, Charuel JL, ... ... DeRisi JL, et al. Autoantibodies against type I IFNs in humans with alternative NF-κB pathway deficiency. Nature. PMID 37938781 DOI: 10.1038/s41586-023-06717-x |
0.098 |
|
| 2021 |
Lebel P, Dial R, Vemuri VNP, Garcia V, DeRisi J, Gómez-Sjöberg R. Label-free imaging and classification of live P. falciparum enables high performance parasitemia quantification without fixation or staining. Plos Computational Biology. 17: e1009257. PMID 34370724 DOI: 10.1371/journal.pcbi.1009257 |
0.098 |
|
| 2019 |
Mandel-Brehm C, Dubey D, Kryzer TJ, O'Donovan BD, Tran B, Vazquez SE, Sample HA, Zorn KC, Khan LM, Bledsoe IO, McKeon A, Pleasure SJ, Lennon VA, DeRisi JL, Wilson MR, et al. Kelch-like Protein 11 Antibodies in Seminoma-Associated Paraneoplastic Encephalitis. The New England Journal of Medicine. 381: 47-54. PMID 31269365 DOI: 10.1056/NEJMoa1816721 |
0.096 |
|
| 2019 |
Langelier C, Fung M, Caldera S, Deiss T, Lyden A, Prince BC, Hayakawa Serpa P, Moazed F, Chin-Hong P, DeRisi JL, Calfee CS. Detection of Pneumonia Pathogens from Plasma Cell-Free DNA. American Journal of Respiratory and Critical Care Medicine. PMID 31647702 DOI: 10.1164/rccm.201904-0905LE |
0.096 |
|
| 2011 |
Sun JC, Lopez-Verges S, Kim CC, DeRisi JL, Lanier LL. NK cells and immune "memory". Journal of Immunology (Baltimore, Md. : 1950). 186: 1891-7. PMID 21289313 DOI: 10.4049/Jimmunol.1003035 |
0.096 |
|
| 2014 |
Parrish JZ, Kim CC, Tang L, Bergquist S, Wang T, Derisi JL, Jan LY, Jan YN, Davis GW. Krüppel mediates the selective rebalancing of ion channel expression. Neuron. 82: 537-44. PMID 24811378 DOI: 10.1016/J.Neuron.2014.03.015 |
0.095 |
|
| 2016 |
Nguyen JT, Green A, Wilson MR, DeRisi JL, Gundling K. Neurologic Complications of Common Variable Immunodeficiency. Journal of Clinical Immunology. PMID 27704236 DOI: 10.1007/s10875-016-0336-8 |
0.095 |
|
| 2021 |
Song E, Bartley CM, Chow RD, Ngo TT, Jiang R, Zamecnik CR, Dandekar R, Loudermilk RP, Dai Y, Liu F, Sunshine S, Liu J, Wu W, Hawes IA, Alvarenga BD, ... ... DeRisi JL, et al. Divergent and self-reactive immune responses in the CNS of COVID-19 patients with neurological symptoms. Cell Reports. Medicine. 100288. PMID 33969321 DOI: 10.1016/j.xcrm.2021.100288 |
0.094 |
|
| 2021 |
Schubert RD, Hawes IA, Ramachandran PS, Ramesh A, Crawford ED, Pak JE, Wu W, Cheung CK, O'Donovan BD, Tato CM, Lyden A, Tan M, Sit R, Sowa GM, Sample HA, ... ... DeRisi JL, et al. Author Correction: Pan-viral serology implicates enteroviruses in acute flaccid myelitis. Nature Medicine. PMID 34548659 DOI: 10.1038/s41591-021-01429-z |
0.094 |
|
| 2022 |
Laurie MT, Liu J, Sunshine S, Peng J, Black D, Mitchell AM, Mann SA, Pilarowski G, Zorn KC, Rubio L, Bravo S, Marquez C, Sabatino JJ, Mittl K, Petersen M, ... ... DeRisi J, et al. SARS-CoV-2 variant exposures elicit antibody responses with differential cross-neutralization of established and emerging strains including Delta and Omicron. The Journal of Infectious Diseases. PMID 34979030 DOI: 10.1093/infdis/jiab635 |
0.091 |
|
| 2021 |
Laurie MT, Liu J, Sunshine S, Peng J, Black D, Mitchell AM, Mann SA, Pilarowski G, Zorn KC, Rubio L, Bravo S, Marquez C, Sabatino JJ, Mittl K, Petersen M, ... ... DeRisi J, et al. SARS-CoV-2 variant exposures elicit antibody responses with differential cross-neutralization of established and emerging strains including Delta and Omicron. Medrxiv : the Preprint Server For Health Sciences. PMID 34981075 DOI: 10.1101/2021.09.08.21263095 |
0.091 |
|
| 2022 |
Marquez C, Kerkhoff AD, Schrom J, Rojas S, Black D, Mitchell A, Wang CY, Pilarowski G, Ribeiro S, Jones D, Payan J, Manganelli S, Rojas S, Lemus J, Jain V, ... ... DeRisi J, et al. COVID-19 Symptoms and Duration of Rapid Antigen Test Positivity at a Community Testing and Surveillance Site During Pre-Delta, Delta, and Omicron BA.1 Periods. Jama Network Open. 5: e2235844. PMID 36215069 DOI: 10.1001/jamanetworkopen.2022.35844 |
0.09 |
|
| 2023 |
Bodansky A, Yu DJ, Rallistan A, Kalaycioglu M, Boonyaratanakornkit J, Green DJ, Gauthier J, Turtle CJ, Zorn K, O'Donovan B, Mandel-Brehm C, Asaki J, Kortbawi H, Kung AF, Rackaityte E, ... ... DeRisi JL, et al. Unveiling the autoreactome: Proteome-wide immunological fingerprints reveal the promise of plasma cell depleting therapy. Medrxiv : the Preprint Server For Health Sciences. PMID 38196603 DOI: 10.1101/2023.12.19.23300188 |
0.089 |
|
| 2021 |
Randremanana RV, Andriamandimby SF, Rakotondramanga JM, Razanajatovo NH, Mangahasimbola RT, Randriambolamanantsoa TH, Ranaivoson HC, Rabemananjara HA, Razanajatovo I, Razafindratsimandresy R, Rabarison JH, Brook CE, Rakotomanana F, Rabetombosoa RM, Razafimanjato H, ... ... DeRisi JL, et al. The COVID-19 epidemic in Madagascar: clinical description and laboratory results of the first wave, march-september 2020. Influenza and Other Respiratory Viruses. PMID 33586912 DOI: 10.1111/irv.12845 |
0.089 |
|
| 2021 |
Madera S, Crawford E, Langelier C, Tran NK, Thornborrow E, Miller S, DeRisi JL. Nasopharyngeal SARS-CoV-2 viral loads in young children do not differ significantly from those in older children and adults. Scientific Reports. 11: 3044. PMID 33542262 DOI: 10.1038/s41598-021-81934-w |
0.089 |
|
| 2022 |
Madera S, McNeil N, Serpa PH, Kamm J, Pak C, Caughell C, Nichols A, Dynerman D, Li LM, Sanchez-Guerrero E, Phelps MS, Detweiler AM, Neff N, Reyes H, Miller SA, ... ... DeRisi JL, et al. Prolonged silent carriage, genomic virulence potential and transmission between staff and patients characterize a neonatal intensive care unit (NICU) outbreak of methicillin-resistant (MRSA). Infection Control and Hospital Epidemiology. 1-7. PMID 35311638 DOI: 10.1017/ice.2022.48 |
0.085 |
|
| 2022 |
Peluso MJ, Mitchell A, Wang CY, Takahashi S, Hoh R, Tai V, Durstenfeld MS, Hsue PY, Kelly JD, Martin JN, Wilson MR, Greenhouse B, Deeks SG, DeRisi JL, Henrich TJ. Low Prevalence of Interferon-α Autoantibodies in People Experiencing Long COVID Symptoms. The Journal of Infectious Diseases. PMID 36089700 DOI: 10.1093/infdis/jiac372 |
0.084 |
|
| 2022 |
Bastard P, Vazquez S, Liu J, Laurie MT, Wang CY, Gervais A, Le Voyer T, Bizien L, Zamecnik C, Philippot Q, Rosain J, Catherinot E, Willmore A, Mitchell AM, Bair R, ... ... DeRisi JL, et al. Vaccine breakthrough hypoxemic COVID-19 pneumonia in patients with auto-Abs neutralizing type I IFNs. Science Immunology. eabp8966. PMID 35857576 DOI: 10.1126/sciimmunol.abp8966 |
0.081 |
|
| 2022 |
Zinter MS, Versluys AB, Lindemans CA, Mayday MY, Reyes G, Sunshine S, Chan M, Fiorino EK, Cancio M, Prevaes S, Sirota M, Matthay MA, Kharbanda S, Dvorak CC, Boelens JJ, ... DeRisi JL, et al. Pulmonary microbiome and gene expression signatures differentiate lung function in pediatric hematopoietic cell transplant candidates. Science Translational Medicine. 14: eabm8646. PMID 35263147 DOI: 10.1126/scitranslmed.abm8646 |
0.081 |
|
| 2020 |
Pilarowski G, Marquez C, Rubio L, Peng J, Martinez J, Black D, Chamie G, Jones D, Jacobo J, Tulier-Laiwa V, Rojas S, Rojas S, Cox C, Petersen M, DeRisi J, et al. Field performance and public health response using the BinaxNOW TM Rapid SARS-CoV-2 antigen detection assay during community-based testing. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 33367619 DOI: 10.1093/cid/ciaa1890 |
0.08 |
|
| 2017 |
Faden DL, Asthana S, Tihan T, DeRisi J, Kliot M. Whole Exome Sequencing of Growing and Non-Growing Cutaneous Neurofibromas from a Single Patient with Neurofibromatosis Type 1. Plos One. 12: e0170348. PMID 28099461 DOI: 10.1371/journal.pone.0170348 |
0.08 |
|
| 2019 |
Woodworth MH, Dynerman D, Crawford ED, Doernberg SB, Ramirez-Avila L, Serpa PH, Nichols A, Li LM, Lyden A, Tato CM, Miller S, Derisi JL, Langelier C. Sentinel Case of in the Western United States Following Prolonged Occult Colonization in a Returned Traveler from India. Microbial Drug Resistance (Larchmont, N.Y.). 25: 677-680. PMID 31163013 DOI: 10.1089/Mdr.2018.0408 |
0.079 |
|
| 2022 |
Bodansky A, Vazquez SE, Chou J, Novak T, Al-Musa A, Young C, Newhams M, Kucukak S, Zambrano LD, Mitchell A, Wang CY, Moffitt K, Halasa NB, Loftis LL, Schwartz SP, ... ... DeRisi J, et al. NFKB2 haploinsufficiency identified via screening for IFNα2 autoantibodies in children and adolescents hospitalized with SARS-CoV-2-related complications. The Journal of Allergy and Clinical Immunology. PMID 36509151 DOI: 10.1016/j.jaci.2022.11.020 |
0.079 |
|
| 2024 |
Zamecnik CR, Sowa GM, Abdelhak A, Dandekar R, Bair RD, Wade KJ, Bartley CM, Kizer K, Augusto DG, Tubati A, Gomez R, Fouassier C, Gerungan C, Caspar CM, Alexander J, ... ... DeRisi JL, et al. An autoantibody signature predictive for multiple sclerosis. Nature Medicine. PMID 38641750 DOI: 10.1038/s41591-024-02938-3 |
0.078 |
|
| 2010 |
Kim CC, Derisi JL. VersaCount: customizable manual tally software for cell counting. Source Code For Biology and Medicine. 5: 1. PMID 20180957 DOI: 10.1186/1751-0473-5-1 |
0.077 |
|
| 2023 |
Zamecnik CR, Sowa GM, Abdelhak A, Dandekar R, Bair RD, Wade KJ, Bartley CM, Tubati A, Gomez R, Fouassier C, Gerungan C, Alexander J, Wapniarski AE, Loudermilk RP, Eggers EL, ... ... DeRisi JL, et al. A Predictive Autoantibody Signature in Multiple Sclerosis. Medrxiv : the Preprint Server For Health Sciences. PMID 37205595 DOI: 10.1101/2023.05.01.23288943 |
0.076 |
|
| 2017 |
Milgrom P, Horst JA, Ludwig S, Rothen M, Chaffee BW, Lyalina S, Pollard KS, DeRisi JL, Mancl L. Topical Silver Diamine Fluoride for Dental Caries Arrest in Preschool Children: A Randomized Controlled Trial and Microbiological Analysis of Caries Associated Microbes and Resistance Gene Expression. Journal of Dentistry. PMID 28866468 DOI: 10.1016/J.Jdent.2017.08.015 |
0.073 |
|
| 2020 |
Dubey D, Wilson MR, Clarkson B, Giannini C, Gandhi M, Cheville J, Lennon VA, Eggers S, Devine MF, Mandel-Brehm C, Kryzer T, Hinson SR, Khazaie K, Hales C, Kattah J, ... ... DeRisi JL, et al. Expanded Clinical Phenotype, Oncological Associations, and Immunopathologic Insights of Paraneoplastic Kelch-like Protein-11 Encephalitis. Jama Neurology. PMID 32744608 DOI: 10.1001/Jamaneurol.2020.2231 |
0.073 |
|
| 2010 |
Kim CC, Wilson EB, DeRisi JL. Improved methods for magnetic purification of malaria parasites and haemozoin. Malaria Journal. 9: 17. PMID 20074366 DOI: 10.1186/1475-2875-9-17 |
0.071 |
|
| 2018 |
Maes P, Alkhovsky SV, Bào Y, Beer M, Birkhead M, Briese T, Buchmeier MJ, Calisher CH, Charrel RN, Choi IR, Clegg CS, de la Torre JC, Delwart E, DeRisi JL, Di Bello PL, et al. Taxonomy of the family Arenaviridae and the order Bunyavirales: update 2018. Archives of Virology. PMID 29680923 DOI: 10.1007/S00705-018-3843-5 |
0.067 |
|
| 2022 |
Bartley CM, Ngo TT, Alvarenga BD, Kung AF, Teliska LH, Sy M, DeRisi JL, Rasband MN, Pittock SJ, Dubey D, Wilson MR, Pleasure SJ. βIV-Spectrin Autoantibodies in 2 Individuals With Neuropathy of Possible Paraneoplastic Origin: A Case Series. Neurology(R) Neuroimmunology & Neuroinflammation. 9. PMID 35581007 DOI: 10.1212/NXI.0000000000001188 |
0.067 |
|
| 2022 |
Sabatino JJ, Mittl K, Rowles WM, McPolin K, Rajan JV, Laurie MT, Zamecnik CR, Dandekar R, Alvarenga BD, Loudermilk RP, Gerungan C, Spencer CM, Sagan SA, Augusto DG, Alexander JR, ... DeRisi JL, et al. Multiple sclerosis therapies differentially impact SARS-CoV-2 vaccine-induced antibody and T cell immunity and function. Jci Insight. PMID 35030101 DOI: 10.1172/jci.insight.156978 |
0.067 |
|
| 2017 |
Bhakta NR, Christenson SA, Nerella S, Solberg OD, Nguyen CP, Choy DF, Jung KL, Garudadri S, Bonser LR, Pollack JL, Zlock LT, Erle DJ, Langelier C, Derisi JL, Arron JR, et al. Interferon-stimulated Gene Expression, Type-2 Inflammation and Endoplasmic Reticulum Stress in Asthma. American Journal of Respiratory and Critical Care Medicine. PMID 29064281 DOI: 10.1164/Rccm.201706-1070Oc |
0.066 |
|
| 2021 |
Ishikawa H, Mandel-Brehm C, Shindo A, Cady MA, Mann SA, Niwa A, Miyashita K, Ii Y, Zorn KC, Taniguchi A, Maeda M, Wilson MR, DeRisi JL, Tomimoto H. Long-term MRI changes in a patient with Kelch-like protein 11-associated paraneoplastic neurological syndrome. European Journal of Neurology. PMID 34561925 DOI: 10.1111/ene.15120 |
0.066 |
|
| 2022 |
Mandel-Brehm C, Benson LA, Tran B, Kung AF, Mann SA, Vazquez SE, Retallack H, Sample HA, Zorn KC, Khan LM, Kerr LM, McAlpine PL, Zhang L, McCarthy F, Elias JE, ... ... DeRisi JL, et al. ZSCAN1 autoantibodies are associated with pediatric paraneoplastic ROHHAD. Annals of Neurology. PMID 35466441 DOI: 10.1002/ana.26380 |
0.061 |
|
| 2021 |
Rubach MP, Mukemba JP, Florence SM, Lopansri BK, Hyland K, Simmons RA, Langelier C, Nakielny S, DeRisi JL, Yeo TW, Anstey NM, Weinberg JB, Mwaikambo ED, Granger DL. Cerebrospinal fluid pterins, pterin-dependent neurotransmitters, and mortality in pediatric cerebral malaria. The Journal of Infectious Diseases. PMID 33617646 DOI: 10.1093/infdis/jiab086 |
0.059 |
|
| 2020 |
Shah SJ, Barish PN, Prasad PA, Kistler A, Neff N, Kamm J, Li LM, Chiu CY, Babik JM, Fang MC, Kangelaris KN, Langelier C, Abe-Jones Y, Alipanah N, Alvarez FN, ... ... DeRisi JL, et al. Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: A retrospective cohort study of patients with and without COVID-19. Eclinicalmedicine. 100518. PMID 32864588 DOI: 10.1016/J.Eclinm.2020.100518 |
0.058 |
|
| 2020 |
Shah SJ, Barish PN, Prasad PA, Kistler AL, Neff N, Kamm J, Li LM, Chiu CY, Babick JM, Fang MC, Abe-Jones Y, Alipanah N, Alvarez FN, Botvinnik OB, Davis JM, ... ... DeRisi JL, et al. Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: a comparison of patients with and without COVID-19. Medrxiv : the Preprint Server For Health Sciences. PMID 32511488 DOI: 10.1101/2020.05.02.20082461 |
0.057 |
|
| 2019 |
Maes P, Adkins S, Alkhovsky SV, Avšič-Županc T, Ballinger MJ, Bente DA, Beer M, Bergeron É, Blair CD, Briese T, Buchmeier MJ, Burt FJ, Calisher CH, Charrel RN, Choi IR, ... ... DeRisi JL, et al. Taxonomy of the order Bunyavirales: second update 2018. Archives of Virology. PMID 30663021 DOI: 10.1007/S00705-018-04127-3 |
0.056 |
|
| 2022 |
Liu J, Laurie MT, Rubio L, Vazquez SE, Sunshine S, Mitchell AM, Hapte-Selassie M, Mann SA, Pilarowski G, Black D, Marquez C, Rojas S, Lionakis MS, Petersen M, Whitman JD, ... ... DeRisi J, et al. SARS-CoV-2 transmission dynamics and immune responses in a household of vaccinated persons. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 35037050 DOI: 10.1093/cid/ciac029 |
0.054 |
|
| 2018 |
Miller LJ, Fetterer DP, Garza NL, Lackemeyer MG, Donnelly GC, Steffens JT, Van Tongeren SA, Fiallos JO, Moore JL, Marko ST, Lugo-Roman LA, Fedewa G, DeRisi JL, Kuhn JH, Stahl SJ. A fixed moderate-dose combination of tiletamine+zolazepam outperforms midazolam in induction of short-term immobilization of ball pythons (Python regius). Plos One. 13: e0199339. PMID 30339670 DOI: 10.1371/journal.pone.0199339 |
0.054 |
|
| 2020 |
Crawford ED, Acosta I, Ahyong V, Anderson EC, Arevalo S, Asarnow D, Axelrod S, Ayscue P, Azimi CS, Azumaya CM, Bachl S, Bachmutsky I, Bhaduri A, Brown JB, Batson J, ... ... DeRisi JL, et al. Rapid deployment of SARS-CoV-2 testing: The CLIAHUB. Plos Pathogens. 16: e1008966. PMID 33112933 DOI: 10.1371/journal.ppat.1008966 |
0.053 |
|
| 2020 |
Seto J, Horst JA, Parkinson DY, Frachella JC, DeRisi JL. Enhanced Tooth Structure Via Silver Microwires Following Treatment with 38 Percent Silver Diamine Fluoride. Pediatric Dentistry. 42: 226-231. PMID 32522328 |
0.046 |
|
| 2022 |
Spottiswoode N, Bloomstein JD, Caldera S, Sessolo A, McCauley K, Byanyima P, Zawedde J, Kalantar K, Kaswabuli S, Rutishauser RL, Lieng MK, Davis JL, Moore J, Jan A, Iwai S, ... ... DeRisi JL, et al. Pneumonia surveillance with culture-independent metatranscriptomics in HIV-positive adults in Uganda: a cross-sectional study. The Lancet. Microbe. 3: e357-e365. PMID 35544096 DOI: 10.1016/S2666-5247(21)00357-8 |
0.046 |
|
| 2020 |
Berger A, Matloubian M, Shah NP, Wachter RM, DeRisi JL, Anderson M. The Molecular Medicine Investigation Unit: Linking Patient Care and Scientific Inquiry in Physician-Scientist Training. Journal of Graduate Medical Education. 12: 92-97. PMID 32089799 DOI: 10.4300/Jgme-D-19-00507.1 |
0.043 |
|
| 2021 |
Bartley CM, Johns C, Ngo TT, Dandekar R, Loudermilk RL, Alvarenga BD, Hawes IA, Zamecnik CR, Zorn KC, Alexander JR, Wapniarski AE, DeRisi JL, Francisco C, Nash KB, Wietstock SO, et al. Anti-SARS-CoV-2 and Autoantibody Profiles in the Cerebrospinal Fluid of 3 Teenaged Patients With COVID-19 and Subacute Neuropsychiatric Symptoms. Jama Neurology. PMID 34694339 DOI: 10.1001/jamaneurol.2021.3821 |
0.043 |
|
| 2020 |
Fulton BD, Proudman DG, Sample HA, Gelfand JM, Chiu CY, DeRisi JL, Wilson MR. Exploratory analysis of the potential for advanced diagnostic testing to reduce healthcare expenditures of patients hospitalized with meningitis or encephalitis. Plos One. 15: e0226895. PMID 31940319 DOI: 10.1371/journal.pone.0226895 |
0.043 |
|
| 2015 |
O'Donoghue AJ, Knudsen GM, Beekman C, Perry JA, Johnson AD, DeRisi JL, Craik CS, Bennett RJ. Correction: Destructin-1 is a collagen-degrading endopeptidase secreted by Pseudogymnoascus destructans, the causative agent of white-nose syndrome (Proceedings of the National Academy of Sciences United State of America (2015) 112, (7478-7483) DOI: 10.1073/pnas.1507082112) Proceedings of the National Academy of Sciences of the United States of America. 112: E3152. DOI: 10.1073/pnas.1509071112 |
0.042 |
|
| 2018 |
Wilson MR, O'Donovan BD, DeRisi JL. Misinterpretation of Study Data-Reply. Jama Neurology. PMID 30477022 DOI: 10.1001/jamaneurol.2018.3671 |
0.038 |
|
| 2018 |
Garcia VE, Liu J, DeRisi JL. Low-cost touchscreen driven programmable dual syringe pump for life science applications Hardwarex. 4: e00027. DOI: 10.1016/j.ohx.2018.e00027 |
0.037 |
|
| 2021 |
Marquez C, Kerkhoff AD, Naso J, Contreras MG, Castellanos Diaz E, Rojas S, Peng J, Rubio L, Jones D, Jacobo J, Rojas S, Gonzalez R, Fuchs JD, Black D, Ribeiro S, ... ... DeRisi J, et al. A multi-component, community-based strategy to facilitate COVID-19 vaccine uptake among Latinx populations: From theory to practice. Plos One. 16: e0257111. PMID 34543291 DOI: 10.1371/journal.pone.0257111 |
0.03 |
|
| 2021 |
Naso J, Rojas S, Peng J, Marquez C, Contreras M, Castellanos E, Rojas S, Rubio L, Jones D, Jacobo J, Black D, Tulier-Laiwa V, Martinez J, Chamie G, Pilarowski G, ... DeRisi J, et al. High Parental Vaccine Motivation at a Neighborhood-Based Vaccine and Testing Site Serving a Predominantly Latinx Community. Health Equity. 5: 840-846. PMID 35018317 DOI: 10.1089/heq.2021.0073 |
0.027 |
|
| 1963 |
DERISI J, FORTE R. [RECURRING ILEO-ILEAL INTESTINAL INVAGINATION IN AN OLDER CHILD CAUSED BY A LYMPHOSARCOMA OF THE SMALL INTESTINE]. Annales De Chirurgie Infantile. 4: 381-2. PMID 14150698 |
0.025 |
|
| 2018 |
Beck ES, Ramachandran PS, Khan LM, Sample HA, Zorn KC, O'Connell EM, Nash T, Reich DS, Venkatesan A, DeRisi JL, Nath A, Wilson MR. Clinicopathology Conference: 41 year old woman with chronic relapsing meningitis. Annals of Neurology. PMID 30565288 DOI: 10.1002/Ana.25400 |
0.024 |
|
| 2019 |
Sloan EA, Sampognaro PJ, Junn JC, Chin C, Jacques L, Ramachandran PS, DeRisi JL, Wilson MR, Kriegstein AR, Bollen AW, Solomon DA, Margeta M, Engstrom JW. Neuroglial stem cell-derived inflammatory pseudotumor (n-SCIPT): clinicopathologic characterization of a novel lesion of the lumbosacral spinal cord and nerve roots following intrathecal allogeneic stem cell intervention. Acta Neuropathologica. PMID 31659431 DOI: 10.1007/S00401-019-02089-7 |
0.023 |
|
| 2021 |
Vazquez SE, Bastard P, Kelly K, Gervais A, Norris PJ, Dumont LJ, Casanova JL, Anderson MS, DeRisi JL. Neutralizing Autoantibodies to Type I Interferons in COVID-19 Convalescent Donor Plasma. Journal of Clinical Immunology. PMID 34009544 DOI: 10.1007/s10875-021-01060-0 |
0.016 |
|
| 2020 |
DeRisi JL. Erratum. Pediatric Dentistry. 42: 248. PMID 32847662 |
0.01 |
|
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