Alma L. Burlingame - Publications

University of California, San Francisco, San Francisco, CA 
Mass spectrometry

233 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Maynard JC, Fujihira H, Dolgonos GE, Suzuki T, Burlingame AL. Cytosolic N-GlcNAc proteins are formed by the action of endo-β-N-acetylglucosaminidase. Biochemical and Biophysical Research Communications. 530: 719-724. PMID 32782141 DOI: 10.1016/J.Bbrc.2020.06.127  0.309
2020 von Appen A, LaJoie D, Johnson IE, Trnka MJ, Pick SM, Burlingame AL, Ullman KS, Frost A. LEM2 phase separation promotes ESCRT-mediated nuclear envelope reformation. Nature. 582: 115-118. PMID 32494070 DOI: 10.1038/S41586-020-2232-X  0.301
2020 Wilkins JA, Kaasik K, Chalkley RJ, Burlingame AL. Characterization of Prenylated C-terminal Peptides Using a Thiopropyl-based Capture Technique and LC-MS/MS. Molecular & Cellular Proteomics : McP. PMID 32284353 DOI: 10.1074/Mcp.Ra120.001944  0.367
2020 Hamdan H, Lim BC, Torii T, Joshi A, Konning M, Smith C, Palmer DJ, Ng P, Leterrier C, Oses-Prieto JA, Burlingame AL, Rasband MN. Mapping axon initial segment structure and function by multiplexed proximity biotinylation. Nature Communications. 11: 100. PMID 31900387 DOI: 10.1038/S41467-019-13658-5  0.302
2019 MacRae AJ, Coltri P, Hrabeta-Robinson E, Chalkley RJ, Burlingame AL, Jurica MS. A two-step probing method to compare lysine accessibility across macromolecular complex conformations. Rna Biology. PMID 31213125 DOI: 10.1080/15476286.2019.1632777  0.311
2019 Hernández-Ortega S, Sánchez-Botet A, Quandt E, Masip N, Gasa L, Verde G, Jiménez J, Levin RS, Rutaganira FU, Burlingame AL, Wolfgeher D, Ribeiro MPC, Kron SJ, Shokat KM, Clotet J. Phosphoregulation of the oncogenic protein regulator of cytokinesis 1 (PRC1) by the atypical CDK16/CCNY complex. Experimental & Molecular Medicine. 51: 44. PMID 30992425 DOI: 10.1038/S12276-019-0242-2  0.327
2019 Hasdemir B, Oses-Prieto JA, Burlingame A, Bhargava A. Probing the Interactome of Corticotropin-Releasing Factor Receptor Heteromers Using Mass Spectrometry. Methods in Molecular Biology (Clifton, N.J.). 1947: 269-285. PMID 30969422 DOI: 10.1007/978-1-4939-9121-1_15  0.336
2019 Longbotham JE, Chio CM, Dharmarajan V, Trnka MJ, Torres IO, Goswami D, Ruiz K, Burlingame AL, Griffin PR, Fujimori DG. Histone H3 binding to the PHD1 domain of histone demethylase KDM5A enables active site remodeling. Nature Communications. 10: 94. PMID 30626866 DOI: 10.1038/S41467-018-07829-Z  0.309
2018 Shurtleff MJ, Itzhak DN, Hussmann JA, Schirle Oakdale NT, Costa EA, Jonikas M, Weibezahn J, Popova KD, Jan CH, Sinitcyn P, Vembar SS, Hernandez H, Cox J, Burlingame AL, Brodsky J, et al. The ER membrane protein complex interacts cotranslationally to enable biogenesis of multipass membrane proteins. Elife. 7. PMID 29809151 DOI: 10.7554/Elife.37018  0.312
2018 Forester CM, Zhao Q, Phillips NJ, Urisman A, Chalkley RJ, Oses-Prieto JA, Zhang L, Ruggero D, Burlingame AL. Revealing nascent proteomics in signaling pathways and cell differentiation. Proceedings of the National Academy of Sciences of the United States of America. PMID 29467287 DOI: 10.1073/Pnas.1707514115  0.356
2017 Larson AG, Elnatan D, Keenen MM, Trnka MJ, Johnston JB, Burlingame AL, Agard DA, Redding S, Narlikar GJ. Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin. Nature. PMID 28636604 DOI: 10.1038/Nature22822  0.314
2017 Zhou CY, Stoddard CI, Johnston JB, Trnka MJ, Echeverria I, Palovcak E, Sali A, Burlingame AL, Cheng Y, Narlikar GJ. Regulation of Rvb1/Rvb2 by a Domain within the INO80 Chromatin Remodeling Complex Implicates the Yeast Rvbs as Protein Assembly Chaperones. Cell Reports. 19: 2033-2044. PMID 28591576 DOI: 10.1016/J.Celrep.2017.05.029  0.334
2017 Xu SL, Chalkley RJ, Maynard JC, Wang W, Ni W, Jiang X, Shin K, Cheng L, Savage D, Hühmer AF, Burlingame AL, Wang ZY. Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. PMID 28154133 DOI: 10.1073/Pnas.1610452114  0.342
2017 Zhao Q, Ouyang X, Wan X, Gajiwala KS, Kath JC, Jones LH, Burlingame AL, Taunton J. Broad-Spectrum Kinase Profiling in Live Cells with Lysine-Targeted Sulfonyl Fluoride Probes. Journal of the American Chemical Society. PMID 28051857 DOI: 10.1021/Jacs.6B08536  0.311
2016 Urisman A, Levin RS, Gordan JD, Webber JT, Hernandez H, Ishihama Y, Shokat KM, Burlingame AL. An optimized chromatographic strategy for multiplexing in parallel reaction monitoring mass spectrometry: Insights from quantitation of activated kinases. Molecular & Cellular Proteomics : McP. PMID 27940637 DOI: 10.1074/Mcp.M116.058172  0.338
2016 Doll S, Urisman A, Oses-Prieto JA, Arnott D, Burlingame AL. Quantitative proteomics reveals fundamental regulatory differences in oncogenic HRAS and IDH1 driven astrocytoma. Molecular & Cellular Proteomics : McP. PMID 27834733 DOI: 10.1074/Mcp.M116.063883  0.324
2016 Bu SL, Liu C, Liu N, Zhao JL, Ai LF, Chi H, Li KL, Chien CW, Burlingame AL, Zhang SW, Wang ZY. Immuno-purification mass spectrometry identifies protein phosphatase 2A (PP2A) and BIN2/GSK3 as regulators of AKS transcription factors in Arabidopsis. Molecular Plant. PMID 27769939 DOI: 10.1016/J.Molp.2016.09.016  0.322
2016 Robinson PJ, Trnka MJ, Bushnell DA, Davis RE, Mattei PJ, Burlingame AL, Kornberg RD. Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex. Cell. 166: 1411-1422.e16. PMID 27610567 DOI: 10.1016/J.Cell.2016.08.050  0.329
2016 Maynard JC, Burlingame AL, Medzihradszky KF. Cysteine S-linked N-acetylglucosamine (S-GlcNAcylation), a new post-translational modification in mammals. Molecular & Cellular Proteomics : McP. PMID 27558639 DOI: 10.1074/Mcp.M116.061549  0.331
2016 Li S, Yen L, Pastor WA, Johnston JB, Du J, Shew CJ, Liu W, Ho J, Stender B, Clark AT, Burlingame AL, Daxinger L, Patel DJ, Jacobsen SE. Mouse MORC3 is a GHKL ATPase that localizes to H3K4me3 marked chromatin. Proceedings of the National Academy of Sciences of the United States of America. 113: E5108-16. PMID 27528681 DOI: 10.1073/Pnas.1609709113  0.331
2016 Posch C, Sanlorenzo M, Vujic I, Oses-Prieto JA, Cholewa BD, Kim ST, Ma J, Lai K, Zekhtser M, Esteve-Puig R, Green G, Chand S, Burlingame AL, Panzer-Grümayer R, Rappersberger K, et al. Phospho-proteomic analyses of NRAS(G12) and NRAS(Q61) mutant melanocytes reveal increased CK2α kinase levels in NRAS(Q61) mutant cells. The Journal of Investigative Dermatology. PMID 27251789 DOI: 10.1016/J.Jid.2016.05.098  0.314
2016 To TL, Medzihradszky KF, Burlingame AL, DeGrado WF, Jo H, Shu X. Photoactivatable protein labeling by singlet oxygen mediated reactions. Bioorganic & Medicinal Chemistry Letters. PMID 27220724 DOI: 10.1016/J.Bmcl.2016.05.034  0.323
2016 Xu SL, Medzihradszky KF, Wang ZY, Burlingame AL, Chalkley RJ. N-Glycopeptide Profiling in Arabidopsis Inflorescence. Molecular & Cellular Proteomics : McP. PMID 27067053 DOI: 10.1074/Mcp.M115.056101  0.364
2015 Lu J, Trnka MJ, Roh SH, Robinson PJ, Shiau C, Fujimori DG, Chiu W, Burlingame AL, Guan S. Improved Peak Detection and Deconvolution of Native Electrospray Mass Spectra from Large Protein Complexes. Journal of the American Society For Mass Spectrometry. PMID 26323614 DOI: 10.1007/S13361-015-1235-6  0.332
2015 Burlingame A, Carr SA, Bradshaw RA, Chalkley RJ. On Credibility, Clarity, and Compliance. Molecular & Cellular Proteomics : McP. 14: 1731-3. PMID 26041845 DOI: 10.1074/Mcp.E115.052506  0.306
2015 Doll S, Burlingame AL. Mass spectrometry-based detection and assignment of protein posttranslational modifications. Acs Chemical Biology. 10: 63-71. PMID 25541750 DOI: 10.1021/Cb500904B  0.359
2015 Wang Y, Kim SM, Trnka MJ, Liu Y, Burlingame AL, Correia MA. Human liver cytochrome P450 3A4 ubiquitination: molecular recognition by UBC7-gp78 autocrine motility factor receptor and UbcH5a-CHIP-Hsc70-Hsp40 E2-E3 ubiquitin ligase complexes. The Journal of Biological Chemistry. 290: 3308-32. PMID 25451919 DOI: 10.1074/Jbc.M114.611525  0.3
2014 Carr SA, Abbatiello SE, Ackermann BL, Borchers C, Domon B, Deutsch EW, Grant RP, Hoofnagle AN, Hüttenhain R, Koomen JM, Liebler DC, Liu T, MacLean B, Mani DR, Mansfield E, ... ... Burlingame AL, et al. Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach. Molecular & Cellular Proteomics : McP. 13: 907-17. PMID 24443746 DOI: 10.1074/Mcp.M113.036095  0.303
2014 Trnka MJ, Baker PR, Robinson PJ, Burlingame AL, Chalkley RJ. Matching cross-linked peptide spectra: only as good as the worse identification. Molecular & Cellular Proteomics : McP. 13: 420-34. PMID 24335475 DOI: 10.1074/Mcp.M113.034009  0.32
2013 Medzihradszky KF, Maltby DA, Hall SC, Settineri CA, Burlingame AL. Characterization of protein iv-glycosylation by reversed-phase microbore liquid chromatography / electrospray mass spectrometry, complementary mobile phases, and sequential exoglycosidase digestion. Journal of the American Society For Mass Spectrometry. 5: 350-8. PMID 24222589 DOI: 10.1016/1044-0305(94)85050-X  0.335
2013 Wang C, Shang JX, Chen QX, Oses-Prieto JA, Bai MY, Yang Y, Yuan M, Zhang YL, Mu CC, Deng Z, Wei CQ, Burlingame AL, Wang ZY, Sun Y. Identification of BZR1-interacting proteins as potential components of the brassinosteroid signaling pathway in Arabidopsis through tandem affinity purification. Molecular & Cellular Proteomics : McP. 12: 3653-65. PMID 24019147 DOI: 10.1074/Mcp.M113.029256  0.371
2013 Trinidad JC, Schoepfer R, Burlingame AL, Medzihradszky KF. N- and O-glycosylation in the murine synaptosome. Molecular & Cellular Proteomics : McP. 12: 3474-88. PMID 23816992 DOI: 10.1074/Mcp.M113.030007  0.327
2013 Aebersold R, Burlingame AL, Bradshaw RA. Western blots versus selected reaction monitoring assays: time to turn the tables? Molecular & Cellular Proteomics : McP. 12: 2381-2. PMID 23756428 DOI: 10.1074/Mcp.E113.031658  0.321
2013 Shiau C, Trnka MJ, Bozicevic A, Ortiz Torres I, Al-Sady B, Burlingame AL, Narlikar GJ, Fujimori DG. Reconstitution of nucleosome demethylation and catalytic properties of a Jumonji histone demethylase. Chemistry & Biology. 20: 494-9. PMID 23601638 DOI: 10.1016/J.Chembiol.2013.03.008  0.306
2013 Biarc J, Chalkley RJ, Burlingame AL, Bradshaw RA. Dissecting the roles of tyrosines 490 and 785 of TrkA protein in the induction of downstream protein phosphorylation using chimeric receptors Journal of Biological Chemistry. 288: 16606-16618. PMID 23589303 DOI: 10.1074/Jbc.M113.475285  0.304
2013 Greninger AL, Knudsen GM, Betegon M, Burlingame AL, DeRisi JL. ACBD3 interaction with TBC1 domain 22 protein is differentially affected by enteroviral and kobuviral 3A protein binding. Mbio. 4: e00098-13. PMID 23572552 DOI: 10.1128/Mbio.00098-13  0.315
2013 Bessat M, Knudsen G, Burlingame AL, Wang CC. A minimal anaphase promoting complex/cyclosome (APC/C) in Trypanosoma brucei. Plos One. 8: e59258. PMID 23533609 DOI: 10.1371/Journal.Pone.0059258  0.32
2013 Le DD, Cortesi AT, Myers SA, Burlingame AL, Fujimori DG. Site-specific and regiospecific installation of methylarginine analogues into recombinant histones and insights into effector protein binding. Journal of the American Chemical Society. 135: 2879-82. PMID 23398247 DOI: 10.1021/Ja3108214  0.348
2013 Ilagan JO, Chalkley RJ, Burlingame AL, Jurica MS. Rearrangements within human spliceosomes captured after exon ligation. Rna (New York, N.Y.). 19: 400-12. PMID 23345524 DOI: 10.1261/Rna.034223.112  0.305
2013 Myers SA, Daou S, Affar EB, Burlingame A. Electron transfer dissociation (ETD): The mass spectrometric breakthrough essential for O-GlcNAc protein site assignments-a study of the O-GlcNAcylated protein Host Cell Factor C1 Proteomics. 13: 982-991. PMID 23335398 DOI: 10.1002/Pmic.201200332  0.318
2013 Bradshaw RA, Chalkley RJ, Biarc J, Burlingame AL. Receptor tyrosine kinase signaling mechanisms: Devolving TrkA responses with phosphoproteomics Advances in Biological Regulation. 53: 87-96. PMID 23266087 DOI: 10.1016/J.Jbior.2012.10.006  0.319
2013 Zhuang M, Guan S, Wang H, Burlingame AL, Wells JA. Substrates of IAP ubiquitin ligases identified with a designed orthogonal E3 ligase, the NEDDylator. Molecular Cell. 49: 273-82. PMID 23201124 DOI: 10.1016/J.Molcel.2012.10.022  0.332
2012 O'Donoghue AJ, Eroy-Reveles AA, Knudsen GM, Ingram J, Zhou M, Statnekov JB, Greninger AL, Hostetter DR, Qu G, Maltby DA, Anderson MO, Derisi JL, McKerrow JH, Burlingame AL, Craik CS. Global identification of peptidase specificity by multiplex substrate profiling. Nature Methods. 9: 1095-100. PMID 23023596 DOI: 10.1038/Nmeth.2182  0.341
2012 Beltrao P, Albanèse V, Kenner LR, Swaney DL, Burlingame A, Villén J, Lim WA, Fraser JS, Frydman J, Krogan NJ. Systematic functional prioritization of protein posttranslational modifications. Cell. 150: 413-25. PMID 22817900 DOI: 10.1016/J.Cell.2012.05.036  0.351
2012 Sherman J, Molloy MP, Burlingame AL. Why complexity and entropy matter: information, posttranslational modifications, and assay fidelity. Proteomics. 12: 1147-50. PMID 22577016 DOI: 10.1002/Pmic.201100459  0.331
2012 Burlingame AL, Stults JT. Mass spectrometry: reconnaissance at the Frontiers of biology. Molecular & Cellular Proteomics : McP. 11: 1-2. PMID 22511459 DOI: 10.1074/Mcp.E112.019653  0.317
2012 Ruperez P, Gago-Martinez A, Burlingame AL, Oses-Prieto JA. Quantitative phosphoproteomic analysis reveals a role for serine and threonine kinases in the cytoskeletal reorganization in early T cell receptor activation in human primary T cells. Molecular & Cellular Proteomics : McP. 11: 171-86. PMID 22499768 DOI: 10.1074/Mcp.M112.017863  0.325
2012 Guan S, Price JC, Ghaemmaghami S, Prusiner SB, Burlingame AL. Compartment modeling for mammalian protein turnover studies by stable isotope metabolic labeling. Analytical Chemistry. 84: 4014-21. PMID 22444387 DOI: 10.1021/Ac203330Z  0.301
2012 Agard NJ, Mahrus S, Trinidad JC, Lynn A, Burlingame AL, Wells JA. Global kinetic analysis of proteolysis via quantitative targeted proteomics. Proceedings of the National Academy of Sciences of the United States of America. 109: 1913-8. PMID 22308409 DOI: 10.1073/Pnas.1117158109  0.321
2012 Wang Y, Guan S, Acharya P, Liu Y, Thirumaran RK, Brandman R, Schuetz EG, Burlingame AL, Correia MA. Multisite phosphorylation of human liver cytochrome P450 3A4 enhances Its gp78- and CHIP-mediated ubiquitination: a pivotal role of its Ser-478 residue in the gp78-catalyzed reaction. Molecular & Cellular Proteomics : McP. 11: M111.010132. PMID 22101235 DOI: 10.1074/Mcp.M111.010132  0.313
2012 Biarc J, Chalkley RJ, Burlingame AL, Bradshaw RA. The induction of serine/threonine protein phosphorylations by a PDGFR/TrkA chimera in stably transfected PC12 cells Molecular and Cellular Proteomics. 11: 15-30. PMID 22027198 DOI: 10.1074/Mcp.M111.013375  0.361
2011 Deng Z, Xu S, Chalkley RJ, Oses-Prieto JA, Burlingame AL, Wang ZY, Kutschera U. Rapid auxin-mediated changes in the proteome of the epidermal cells in rye coleoptiles: implications for the initiation of growth. Plant Biology (Stuttgart, Germany). 14: 420-7. PMID 22117532 DOI: 10.1111/J.1438-8677.2011.00513.X  0.349
2011 Guan S, Price JC, Prusiner SB, Ghaemmaghami S, Burlingame AL. A data processing pipeline for mammalian proteome dynamics studies using stable isotope metabolic labeling. Molecular & Cellular Proteomics : McP. 10: M111.010728. PMID 21937731 DOI: 10.1074/Mcp.M111.010728  0.335
2011 Ge W, Song Y, Zhang C, Zhang Y, Burlingame AL, Guo Y. Proteomic analyses of apoplastic proteins from germinating Arabidopsis thaliana pollen. Biochimica Et Biophysica Acta. 1814: 1964-73. PMID 21798377 DOI: 10.1016/J.Bbapap.2011.07.013  0.317
2011 Charles GM, Chen C, Shih SC, Collins SR, Beltrao P, Zhang X, Sharma T, Tan S, Burlingame AL, Krogan NJ, Madhani HD, Narlikar GJ. Site-specific acetylation mark on an essential chromatin-remodeling complex promotes resistance to replication stress. Proceedings of the National Academy of Sciences of the United States of America. 108: 10620-5. PMID 21673141 DOI: 10.1073/Pnas.1019735108  0.302
2011 Myers SA, Panning B, Burlingame AL. Polycomb repressive complex 2 is necessary for the normal site-specific O-GlcNAc distribution in mouse embryonic stem cells. Proceedings of the National Academy of Sciences of the United States of America. 108: 9490-5. PMID 21606357 DOI: 10.1073/Pnas.1019289108  0.301
2011 Tang W, Yuan M, Wang R, Yang Y, Wang C, Oses-Prieto JA, Kim TW, Zhou HW, Deng Z, Gampala SS, Gendron JM, Jonassen EM, Lillo C, DeLong A, Burlingame AL, et al. PP2A activates brassinosteroid-responsive gene expression and plant growth by dephosphorylating BZR1. Nature Cell Biology. 13: 124-31. PMID 21258370 DOI: 10.1038/Ncb2151  0.306
2011 Li T, Xu SL, Oses-Prieto JA, Putil S, Xu P, Wang RJ, Li KH, Maltby DA, An LH, Burlingame AL, Deng ZP, Wang ZY. Proteomics analysis reveals post-translational mechanisms for cold-induced metabolic changes in Arabidopsis. Molecular Plant. 4: 361-74. PMID 21242321 DOI: 10.1093/Mp/Ssq078  0.303
2011 Chu F, Ren X, Chasse A, Hickman T, Zhang L, Yuh J, Smith MT, Burlingame AL. Quantitative mass spectrometry reveals the epigenome as a target of arsenic. Chemico-Biological Interactions. 192: 113-7. PMID 21075096 DOI: 10.1016/J.Cbi.2010.11.003  0.681
2011 Biarc J, Chalkley RJ, Burlingame AL, Bradshaw RA. Receptor tyrosine kinase signaling - a proteomic perspective Advances in Enzyme Regulation. 51: 293-305. PMID 21056590 DOI: 10.1016/J.Advenzreg.2010.10.005  0.323
2011 Gajan J, Oses-prieto J, Lasater EA, Burlingame A, Shah NP. Abstract 2923: Phosphoproteomic assessment of CML cells following transient potent inhibition with dasatinib is associated with durable alteration of the STAT5 and RAF/MEK/ERK pathways Cancer Research. 71: 2923-2923. DOI: 10.1158/1538-7445.Am2011-2923  0.312
2010 Hertz NT, Wang BT, Allen JJ, Zhang C, Dar AC, Burlingame AL, Shokat KM. Chemical genetic approach for kinase-substrate mapping by covalent capture of thiophosphopeptides and analysis by mass spectrometry. Current Protocols in Chemical Biology. 2: 15-36. PMID 23836541 DOI: 10.1002/9780470559277.Ch090201  0.348
2010 Wang F, Bai MY, Deng Z, Oses-Prieto JA, Burlingame AL, Lu T, Chong K, Wang ZY. Proteomic study identifies proteins involved in brassinosteroid regulation of rice growth. Journal of Integrative Plant Biology. 52: 1075-85. PMID 21106006 DOI: 10.1111/J.1744-7909.2010.00992.X  0.334
2010 Ferreyra ML, Biarc J, Burlingame AL, Casati P. Arabidopsis L10 ribosomal proteins in UV-B responses. Plant Signaling & Behavior. 5: 1222-5. PMID 20855946 DOI: 10.4161/Psb.5.10.12758  0.305
2010 Trnka MJ, Burlingame AL. Topographic studies of the GroEL-GroES chaperonin complex by chemical cross-linking using diformyl ethynylbenzene: the power of high resolution electron transfer dissociation for determination of both peptide sequences and their attachment sites. Molecular & Cellular Proteomics : McP. 9: 2306-17. PMID 20813910 DOI: 10.1074/Mcp.M110.003764  0.394
2010 Price JC, Guan S, Burlingame A, Prusiner SB, Ghaemmaghami S. Analysis of proteome dynamics in the mouse brain. Proceedings of the National Academy of Sciences of the United States of America. 107: 14508-13. PMID 20699386 DOI: 10.1073/Pnas.1006551107  0.311
2010 Darula Z, Chalkley RJ, Baker P, Burlingame AL, Medzihradszky KF. Mass spectrometric analysis, automated identification and complete annotation of O-linked glycopeptides. European Journal of Mass Spectrometry (Chichester, England). 16: 421-8. PMID 20530845 DOI: 10.1255/Ejms.1028  0.368
2010 Hallows KR, Bhalla V, Oyster NM, Wijngaarden MA, Lee JK, Li H, Chandran S, Xia X, Huang Z, Chalkley RJ, Burlingame AL, Pearce D. Phosphopeptide screen uncovers novel phosphorylation sites of Nedd4-2 that potentiate its inhibition of the epithelial Na+ channel. The Journal of Biological Chemistry. 285: 21671-8. PMID 20466724 DOI: 10.1074/Jbc.M109.084731  0.335
2010 Burlingame AL, Stults JT. Mass spectrometry and the evolution of proteomics. Molecular & Cellular Proteomics : McP. 9: 753. PMID 20439911 DOI: 10.1074/Mcp.I000001-Mcp201  0.325
2010 Kutschera U, Deng Z, Oses-Prieto JA, Burlingame AL, Wang ZY. Cessation of coleoptile elongation and loss of auxin sensitivity in developing rye seedlings: a quantitative proteomic analysis. Plant Signaling & Behavior. 5: 509-17. PMID 20234181 DOI: 10.4161/Psb.11210  0.33
2010 Phan VT, Ding VW, Li F, Chalkley RJ, Burlingame A, McCormick F. The RasGAP proteins Ira2 and neurofibromin are negatively regulated by Gpb1 in yeast and ETEA in humans. Molecular and Cellular Biology. 30: 2264-79. PMID 20160012 DOI: 10.1128/Mcb.01450-08  0.324
2010 Eliuk SM, Maltby D, Panning B, Burlingame AL. High resolution electron transfer dissociation studies of unfractionated intact histones from murine embryonic stem cells using on-line capillary LC separation: determination of abundant histone isoforms and post-translational modifications. Molecular & Cellular Proteomics : McP. 9: 824-37. PMID 20133344 DOI: 10.1074/Mcp.M900569-Mcp200  0.363
2010 Guan S, Burlingame AL. High mass selectivity for top-down proteomics by application of SWIFT technology. Journal of the American Society For Mass Spectrometry. 21: 455-9. PMID 20060315 DOI: 10.1016/J.Jasms.2009.11.011  0.319
2010 Chalkley RJ, Medzihradszky KF, Lynn AJ, Baker PR, Burlingame AL. Statistical analysis of Peptide electron transfer dissociation fragmentation mass spectrometry. Analytical Chemistry. 82: 579-84. PMID 20028093 DOI: 10.1021/Ac9018582  0.331
2010 Guan S, Burlingame AL. Data processing algorithms for analysis of high resolution MSMS spectra of peptides with complex patterns of posttranslational modifications. Molecular & Cellular Proteomics : McP. 9: 804-10. PMID 19955076 DOI: 10.1074/Mcp.M900431-Mcp200  0.332
2010 Chu F, Baker PR, Burlingame AL, Chalkley RJ. Finding chimeras: a bioinformatics strategy for identification of cross-linked peptides. Molecular & Cellular Proteomics : McP. 9: 25-31. PMID 19809093 DOI: 10.1074/Mcp.M800555-Mcp200  0.675
2009 Jo WJ, Ren X, Chu F, Aleshin M, Wintz H, Burlingame A, Smith MT, Vulpe CD, Zhang L. Acetylated H4K16 by MYST1 protects UROtsa cells from arsenic toxicity and is decreased following chronic arsenic exposure. Toxicology and Applied Pharmacology. 241: 294-302. PMID 19732783 DOI: 10.1016/J.Taap.2009.08.027  0.654
2009 Beltrao P, Trinidad JC, Fiedler D, Roguev A, Lim WA, Shokat KM, Burlingame AL, Krogan NJ. Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species. Plos Biology. 7: e1000134. PMID 19547744 DOI: 10.1371/Journal.Pbio.1000134  0.315
2009 Chalkley RJ, Thalhammer A, Schoepfer R, Burlingame AL. Identification of protein O-GlcNAcylation sites using electron transfer dissociation mass spectrometry on native peptides. Proceedings of the National Academy of Sciences of the United States of America. 106: 8894-9. PMID 19458039 DOI: 10.1073/Pnas.0900288106  0.357
2009 Joubel A, Chalkley RJ, Medzihradszky KF, Hondermarck H, Burlingame AL. Identification of new p53 acetylation sites in COS-1 cells. Molecular & Cellular Proteomics : McP. 8: 1167-73. PMID 19155208 DOI: 10.1074/Mcp.M800487-Mcp200  0.321
2008 Yam AY, Xia Y, Lin HT, Burlingame A, Gerstein M, Frydman J. Defining the TRiC/CCT interactome links chaperonin function to stabilization of newly made proteins with complex topologies. Nature Structural & Molecular Biology. 15: 1255-62. PMID 19011634 DOI: 10.1038/Nsmb.1515  0.326
2008 Sang HL, Sterling H, Burlingame A, McCormick F. Tpr directly binds to Mad1 and Mad2 and is important for the Mad1-Mad2-mediated mitotic spindle checkpoint Genes and Development. 22: 2926-2931. PMID 18981471 DOI: 10.1101/Gad.1677208  0.343
2008 Mahrus S, Trinidad JC, Barkan DT, Sali A, Burlingame AL, Wells JA. Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini. Cell. 134: 866-76. PMID 18722006 DOI: 10.1016/J.Cell.2008.08.012  0.313
2008 Chalkley RJ, Baker PR, Medzihradszky KF, Lynn AJ, Burlingame AL. In-depth analysis of tandem mass spectrometry data from disparate instrument types. Molecular & Cellular Proteomics : McP. 7: 2386-98. PMID 18653769 DOI: 10.1074/Mcp.M800021-Mcp200  0.337
2008 Gräub R, Lancero H, Pedersen A, Chu M, Padmanabhan K, Xu XQ, Spitz P, Chalkley R, Burlingame AL, Stokoe D, Bernstein HS. Cell cycle-dependent phosphorylation of human CDC5 regulates RNA processing. Cell Cycle (Georgetown, Tex.). 7: 1795-803. PMID 18583928 DOI: 10.4161/Cc.7.12.6017  0.308
2008 Li Z, Lee JH, Chu F, Burlingame AL, Günzl A, Wang CC. Identification of a novel chromosomal passenger complex and its unique localization during cytokinesis in Trypanosoma brucei. Plos One. 3: e2354. PMID 18545648 DOI: 10.1371/Journal.Pone.0002354  0.673
2008 Jiménez CR, Huang L, Qiu Y, Burlingame AL. Enzymatic approaches for obtaining amino acid sequence: on-target ladder sequencing. Current Protocols in Protein Science. Unit 16.7. PMID 18429134 DOI: 10.1002/0471140864.Ps1607S15  0.318
2008 Jiménez CR, Huang L, Qiu Y, Burlingame AL. Searching sequence databases over the internet: protein identification using MS-Fit. Current Protocols in Protein Science. Unit 16.5. PMID 18429132 DOI: 10.1002/0471140864.Ps1605S14  0.353
2008 Jiménez CR, Huang L, Qiu Y, Burlingame AL. In-gel digestion of proteins for MALDI-MS fingerprint mapping. Current Protocols in Protein Science. Unit 16.4. PMID 18429131 DOI: 10.1002/0471140864.Ps1604S14  0.35
2008 Jiménez CR, Huang L, Qiu Y, Burlingame AL. Sample preparation for MALDI mass analysis of peptides and proteins. Current Protocols in Protein Science. Unit 16.3. PMID 18429130 DOI: 10.1002/0471140864.Ps1603S14  0.312
2008 Casati P, Campi M, Chu F, Suzuki N, Maltby D, Guan S, Burlingame AL, Walbot V. Histone acetylation and chromatin remodeling are required for UV-B-dependent transcriptional activation of regulated genes in maize. The Plant Cell. 20: 827-42. PMID 18398050 DOI: 10.1105/Tpc.107.056457  0.668
2008 Tang W, Deng Z, Oses-Prieto JA, Suzuki N, Zhu S, Zhang X, Burlingame AL, Wang ZY. Proteomics studies of brassinosteroid signal transduction using prefractionation and two-dimensional DIGE. Molecular & Cellular Proteomics : McP. 7: 728-38. PMID 18182375 DOI: 10.1074/Mcp.M700358-Mcp200  0.357
2008 Trinidad JC, Thalhammer A, Specht CG, Lynn AJ, Baker PR, Schoepfer R, Burlingame AL. Quantitative analysis of synaptic phosphorylation and protein expression. Molecular & Cellular Proteomics : McP. 7: 684-96. PMID 18056256 DOI: 10.1074/Mcp.M700170-Mcp200  0.333
2007 Walther TC, Aguilar PS, Fröhlich F, Chu F, Moreira K, Burlingame AL, Walter P. Pkh-kinases control eisosome assembly and organization. The Embo Journal. 26: 4946-55. PMID 18034155 DOI: 10.1038/Sj.Emboj.7601933  0.667
2007 Deng Z, Zhang X, Tang W, Oses-Prieto JA, Suzuki N, Gendron JM, Chen H, Guan S, Chalkley RJ, Peterman TK, Burlingame AL, Wang ZY. A proteomics study of brassinosteroid response in Arabidopsis. Molecular & Cellular Proteomics : McP. 6: 2058-71. PMID 17848588 DOI: 10.1074/Mcp.M700123-Mcp200  0.34
2007 Gampala SS, Kim TW, He JX, Tang W, Deng Z, Bai MY, Guan S, Lalonde S, Sun Y, Gendron JM, Chen H, Shibagaki N, Ferl RJ, Ehrhardt D, Chong K, ... Burlingame AL, et al. An essential role for 14-3-3 proteins in brassinosteroid signal transduction in Arabidopsis. Developmental Cell. 13: 177-89. PMID 17681130 DOI: 10.1016/J.Devcel.2007.06.009  0.31
2007 Medzihradszky KF, Guan S, Maltby DA, Burlingame AL. Sulfopeptide fragmentation in electron-capture and electron-transfer dissociation. Journal of the American Society For Mass Spectrometry. 18: 1617-24. PMID 17629708 DOI: 10.1016/J.Jasms.2007.06.002  0.31
2007 Simon MD, Chu F, Racki LR, de la Cruz CC, Burlingame AL, Panning B, Narlikar GJ, Shokat KM. The site-specific installation of methyl-lysine analogs into recombinant histones. Cell. 128: 1003-12. PMID 17350582 DOI: 10.1016/j.cell.2006.12.041  0.645
2007 Derrick PJ, Burlingame A, Zaikin V, Kadentsev V, Chizhov A. Obituary: In Memoriam—Oleg S. Chizhov European Journal of Mass Spectrometry. 13: 373-374. DOI: 10.1255/Ejms.894  0.32
2006 Osés-Prieto JA, Zhang X, Burlingame AL. Formation of epsilon-formyllysine on silver-stained proteins: implications for assignment of isobaric dimethylation sites by tandem mass spectrometry. Molecular & Cellular Proteomics : McP. 6: 181-92. PMID 17138591 DOI: 10.1074/Mcp.M600279-Mcp200  0.376
2006 Chu F, Mahrus S, Craik CS, Burlingame AL. Isotope-coded and affinity-tagged cross-linking (ICATXL): an efficient strategy to probe protein interaction surfaces. Journal of the American Chemical Society. 128: 10362-3. PMID 16895390 DOI: 10.1021/Ja0614159  0.679
2006 Chalkley RJ, Brinkworth CS, Burlingame AL. Side-chain fragmentation of alkylated cysteine residues in electron capture dissociation mass spectrometry. Journal of the American Society For Mass Spectrometry. 17: 1271-4. PMID 16809046 DOI: 10.1016/J.Jasms.2006.05.017  0.3
2006 Chu F, Maynard JC, Chiosis G, Nicchitta CV, Burlingame AL. Identification of novel quaternary domain interactions in the Hsp90 chaperone, GRP94. Protein Science : a Publication of the Protein Society. 15: 1260-9. PMID 16731965 DOI: 10.1110/Ps.052065106  0.672
2006 Conway MCP, Whittal RM, Baldwin MA, Burlingame AL, Balhorn R. Electrospray Mass Spectrometry of NeuAc Oligomers Associated with the C Fragment of the Tetanus Toxin Journal of the American Society For Mass Spectrometry. 17: 967-976. PMID 16713287 DOI: 10.1016/J.Jasms.2006.03.004  0.324
2006 Recht J, Tsubota T, Tanny JC, Diaz RL, Berger JM, Zhang X, Garcia BA, Shabanowitz J, Burlingame AL, Hunt DF, Kaufman PD, Allis CD. Histone chaperone Asf1 is required for histone H3 lysine 56 acetylation, a modification associated with S phase in mitosis and meiosis. Proceedings of the National Academy of Sciences of the United States of America. 103: 6988-93. PMID 16627621 DOI: 10.1073/Pnas.0601676103  0.467
2006 Burlingame AL, Haug P, Belsky T, Calvin M. OCCURRENCE OF BIOGENIC STERANES AND PENTACYCLIC TRITERPANES IN AN EOCENE SHALE (52 MILLION YEARS) AND IN AN EARLY PRECAMBRIAN SHALE (2.7 BILLION YEARS): A PRELIMINARY REPORT. Proceedings of the National Academy of Sciences of the United States of America. 54: 1406-12. PMID 16591314 DOI: 10.1073/Pnas.54.5.1406  0.414
2006 Hirsch J, Hansen KC, Choi S, Noh J, Hirose R, Roberts JP, Matthay MA, Burlingame AL, Maher JJ, Niemann CU. Warm ischemia-induced alterations in oxidative and inflammatory proteins in hepatic Kupffer cells in rats. Molecular & Cellular Proteomics : McP. 5: 979-86. PMID 16500929 DOI: 10.1074/Mcp.M500320-Mcp200  0.337
2006 Vosseller K, Trinidad JC, Chalkley RJ, Specht CG, Thalhammer A, Lynn AJ, Snedecor JO, Guan S, Medzihradszky KF, Maltby DA, Schoepfer R, Burlingame AL. O-linked N-acetylglucosamine proteomics of postsynaptic density preparations using lectin weak affinity chromatography and mass spectrometry. Molecular & Cellular Proteomics : McP. 5: 923-34. PMID 16452088 DOI: 10.1074/Mcp.T500040-Mcp200  0.32
2006 Trinidad JC, Specht CG, Thalhammer A, Schoepfer R, Burlingame AL. Comprehensive identification of phosphorylation sites in postsynaptic density preparations. Molecular & Cellular Proteomics : McP. 5: 914-22. PMID 16452087 DOI: 10.1074/Mcp.T500041-Mcp200  0.373
2006 Huang L, Burlingame AL. Comprehensive mass spectrometric analysis of the 20S proteasome complex. Methods in Enzymology. 405: 187-236. PMID 16413316 DOI: 10.1016/S0076-6879(05)05009-3  0.334
2006 Chu F, Nusinow DA, Chalkley RJ, Plath K, Panning B, Burlingame AL. Mapping post-translational modifications of the histone variant MacroH2A1 using tandem mass spectrometry. Molecular & Cellular Proteomics : McP. 5: 194-203. PMID 16210244 DOI: 10.1074/Mcp.M500285-Mcp200  0.69
2005 Burlingame AL, Zhang X, Chalkley RJ. Mass spectrometric analysis of histone posttranslational modifications. Methods (San Diego, Calif.). 36: 383-94. PMID 16112065 DOI: 10.1016/J.Ymeth.2005.03.009  0.351
2005 Bradshaw RA, Burlingame AL. From proteins to proteomics Iubmb Life. 57: 267-272. PMID 16036609 DOI: 10.1080/15216540500091536  0.34
2005 Chalkley RJ, Baker PR, Huang L, Hansen KC, Allen NP, Rexach M, Burlingame AL. Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: II. New developments in Protein Prospector allow for reliable and comprehensive automatic analysis of large datasets. Molecular & Cellular Proteomics : McP. 4: 1194-204. PMID 15937296 DOI: 10.1074/Mcp.D500002-Mcp200  0.354
2005 Chalkley RJ, Baker PR, Hansen KC, Medzihradszky KF, Allen NP, Rexach M, Burlingame AL. Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: I. How much of the data is theoretically interpretable by search engines? Molecular & Cellular Proteomics : McP. 4: 1189-93. PMID 15923566 DOI: 10.1074/Mcp.D500001-Mcp200  0.316
2005 Trinidad JC, Thalhammer A, Specht CG, Schoepfer R, Burlingame AL. Phosphorylation state of postsynaptic density proteins. Journal of Neurochemistry. 92: 1306-16. PMID 15748150 DOI: 10.1111/J.1471-4159.2004.02943.X  0.359
2005 Vosseller K, Hansen KC, Chalkley RJ, Trinidad JC, Wells L, Hart GW, Burlingame AL. Quantitative analysis of both protein expression and serine / threonine post-translational modifications through stable isotope labeling with dithiothreitol. Proteomics. 5: 388-98. PMID 15648052 DOI: 10.1002/Pmic.200401066  0.336
2005 Cutillas PR, Biber J, Marks J, Jacob R, Stieger B, Cramer R, Waterfield M, Burlingame AL, Unwin RJ. Proteomic analysis of plasma membrane vesicles isolated from the rat renal cortex. Proteomics. 5: 101-12. PMID 15593129 DOI: 10.1002/Pmic.200400886  0.317
2005 Smith-Beckerman DM, Fung KW, Williams KE, Auersperg N, Godwin AK, Burlingame AL. Proteome changes in ovarian epithelial cells derived from women with BRCA1 mutations and family histories of cancer. Molecular & Cellular Proteomics : McP. 4: 156-68. PMID 15591324 DOI: 10.1074/Mcp.M400157-Mcp200  0.333
2004 Chu F, Shan SO, Moustakas DT, Alber F, Egea PF, Stroud RM, Walter P, Burlingame AL. Unraveling the interface of signal recognition particle and its receptor by using chemical cross-linking and tandem mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 101: 16454-9. PMID 15546976 DOI: 10.1073/Pnas.0407456101  0.696
2004 Medzihradszky KF, Zhang X, Chalkley RJ, Guan S, McFarland MA, Chalmers MJ, Marshall AG, Diaz RL, Allis CD, Burlingame AL. Characterization of Tetrahymena histone H2B variants and posttranslational populations by electron capture dissociation (ECD) Fourier transform ion cyclotron mass spectrometry (FT-ICR MS). Molecular & Cellular Proteomics : McP. 3: 872-86. PMID 15199121 DOI: 10.1074/Mcp.M400041-Mcp200  0.348
2004 Hirsch J, Hansen KC, Burlingame AL, Matthay MA. Proteomics: Current techniques and potential applications to lung disease American Journal of Physiology - Lung Cellular and Molecular Physiology. 287. PMID 15187006 DOI: 10.1152/Ajplung.00301.2003  0.317
2004 Cutillas P, Burlingame A, Unwin R. Proteomic strategies and their application in studies of renal function. News in Physiological Sciences : An International Journal of Physiology Produced Jointly by the International Union of Physiological Sciences and the American Physiological Society. 19: 114-9. PMID 15143205 DOI: 10.1152/Nips.01515.2003  0.302
2004 Jiménez CR, ter Maat A, Pieneman A, Burlingame AL, Smit AB, Li KW. Spatio-temporal dynamics of the egg-laying-inducing peptides during an egg-laying cycle: a semiquantitative matrix-assisted laser desorption/ionization mass spectrometry approach. Journal of Neurochemistry. 89: 865-75. PMID 15140186 DOI: 10.1111/J.1471-4159.2004.02353.X  0.301
2004 Perlson E, Medzihradszky KF, Darula Z, Munno DW, Syed NI, Burlingame AL, Fainzilber M. Differential proteomics reveals multiple components in retrogradely transported axoplasm after nerve injury. Molecular & Cellular Proteomics : McP. 3: 510-20. PMID 14973157 DOI: 10.1074/Mcp.M400004-Mcp200  0.31
2004 Medzihradszky KF, Darula Z, Perlson E, Fainzilber M, Chalkley RJ, Ball H, Greenbaum D, Bogyo M, Tyson DR, Bradshaw RA, Burlingame AL. O-sulfonation of serine and threonine: mass spectrometric detection and characterization of a new posttranslational modification in diverse proteins throughout the eukaryotes. Molecular & Cellular Proteomics : McP. 3: 429-40. PMID 14752058 DOI: 10.1074/Mcp.M300140-Mcp200  0.384
2004 Hirsch J, Hansen K, Frank J, Chalkley R, Fang X, Burlingame A, Matthay M. Critical Care. 8: P24. DOI: 10.1186/Cc2491  0.308
2003 Hansen KC, Schmitt-Ulms G, Chalkley RJ, Hirsch J, Baldwin MA, Burlingame AL. Mass spectrometric analysis of protein mixtures at low levels using cleavable 13C-isotope-coded affinity tag and multidimensional chromatography. Molecular & Cellular Proteomics : McP. 2: 299-314. PMID 12766231 DOI: 10.1074/Mcp.M300021-Mcp200  0.38
2003 Chalkley RJ, Burlingame AL. Identification of novel sites of O-N-acetylglucosamine modification of serum response factor using quadrupole time-of-flight mass spectrometry. Molecular & Cellular Proteomics : McP. 2: 182-90. PMID 12684542 DOI: 10.1074/Mcp.M300027-Mcp200  0.341
2003 Cutillas PR, Norden AG, Cramer R, Burlingame AL, Unwin RJ. Detection and analysis of urinary peptides by on-line liquid chromatography and mass spectrometry: application to patients with renal Fanconi syndrome. Clinical Science (London, England : 1979). 104: 483-90. PMID 12529166 DOI: 10.1042/Cs20020342  0.305
2002 Williams KE, Carver TA, Miranda JJ, Kautiainen A, Vogel JS, Dingley K, Baldwin MA, Turteltaub KW, Burlingame AL. Attomole detection of in vivo protein targets of benzene in mice: evidence for a highly reactive metabolite. Molecular & Cellular Proteomics : McP. 1: 885-95. PMID 12488464 DOI: 10.1074/Mcp.M200067-Mcp200  0.379
2002 Zhang K, Williams KE, Huang L, Yau P, Siino JS, Bradbury EM, Jones PR, Minch MJ, Burlingame AL. Histone acetylation and deacetylation: identification of acetylation and methylation sites of HeLa histone H4 by mass spectrometry. Molecular & Cellular Proteomics : McP. 1: 500-8. PMID 12239278 DOI: 10.1074/Mcp.M200031-Mcp200  0.655
2002 Huang L, Baldwin MA, Maltby DA, Medzihradszky KF, Baker PR, Allen N, Rexach M, Edmondson RD, Campbell J, Juhasz P, Martin SA, Vestal ML, Burlingame AL. The identification of protein-protein interactions of the nuclear pore complex of Saccharomyces cerevisiae using high throughput matrix-assisted laser desorption ionization time-of-flight tandem mass spectrometry. Molecular & Cellular Proteomics : McP. 1: 434-50. PMID 12169684 DOI: 10.1074/Mcp.M200027-Mcp200  0.395
2002 Zhang K, Tang H, Huang L, Blankenship JW, Jones PR, Xiang F, Yau PM, Burlingame AL. Identification of acetylation and methylation sites of histone H3 from chicken erythrocytes by high-accuracy matrix-assisted laser desorption ionization-time-of-flight, matrix-assisted laser desorption ionization-postsource decay, and nanoelectrospray ionization tandem mass spectrometry. Analytical Biochemistry. 306: 259-69. PMID 12123664 DOI: 10.1006/Abio.2002.5719  0.666
2002 Benvenuti S, Cramer R, Quinn CC, Bruce J, Zvelebil M, Corless S, Bond J, Yang A, Hockfield S, Burlingame AL, Waterfield MD, Jat PS. Differential proteome analysis of replicative senescence in rat embryo fibroblasts. Molecular & Cellular Proteomics : McP. 1: 280-92. PMID 12096110 DOI: 10.1074/Mcp.M100028-Mcp200  0.323
2002 Zanata SM, Lopes MH, Mercadante AF, Hajj GN, Chiarini LB, Nomizo R, Freitas AR, Cabral AL, Lee KS, Juliano MA, de Oliveira E, Jachieri SG, Burlingame A, Huang L, Linden R, et al. Stress-inducible protein 1 is a cell surface ligand for cellular prion that triggers neuroprotection. The Embo Journal. 21: 3307-16. PMID 12093732 DOI: 10.1093/Emboj/Cdf325  0.319
2002 Michels J, Geyer A, Mocanu V, Welte W, Burlingame AL, Przybylski M. Structure and functional characterization of the periplasmic N-terminal polypeptide domain of the sugar-specific ion channel protein (ScrY porin). Protein Science : a Publication of the Protein Society. 11: 1565-74. PMID 12021455 DOI: 10.1110/Ps.2760102  0.321
2001 Chalkley RJ, Burlingame AL. Identification of GlcNAcylation sites of peptides and alpha-crystallin using Q-TOF mass spectrometry. Journal of the American Society For Mass Spectrometry. 12: 1106-13. PMID 11605972 DOI: 10.1016/S1044-0305(01)00295-1  0.355
2001 Person MD, Brown KC, Mahrus S, Craik CS, Burlingame AL. Novel inter-protein cross-link identified in the GGH-ecotin D137Y dimer Protein Science. 10: 1549-1562. PMID 11468352 DOI: 10.1110/Ps.Ps.46601  0.349
2001 Baldwin MA, Medzihradszky KF, Lock CM, Fisher B, Settineri TA, Burlingame AL. Matrix-assisted laser desorption/ionization coupled with quadrupole/orthogonal acceleration time-of-flight mass spectrometry for protein discovery, identification, and structural analysis. Analytical Chemistry. 73: 1707-20. PMID 11338583 DOI: 10.1021/Ac0011080  0.323
2001 Huang L, Jacob RJ, Pegg SC, Baldwin MA, Wang CC, Burlingame AL, Babbitt PC. Functional assignment of the 20 S proteasome from Trypanosoma brucei using mass spectrometry and new bioinformatics approaches. The Journal of Biological Chemistry. 276: 28327-39. PMID 11309374 DOI: 10.1074/Jbc.M008342200  0.36
2001 Hoang VM, Foulk R, Clauser K, Burlingame A, Gibson BW, Fisher SJ. Functional proteomics: Examining the effects of hypoxia on the cytotrophoblast protein repertoire Biochemistry. 40: 4077-4086. PMID 11300788 DOI: 10.1021/Bi0023910  0.312
2001 Medzihradszky KF, Leffler H, Baldwin MA, Burlingame AL. Protein identification by in-gel digestion, high-performance liquid chromatography, and mass spectrometry: peptide analysis by complementary ionization techniques. Journal of the American Society For Mass Spectrometry. 12: 215-21. PMID 11212006 DOI: 10.1016/S1044-0305(00)00214-2  0.366
2000 Laiko VV, Baldwin MA, Burlingame AL. Atmospheric pressure matrix-assisted laser desorption/ionization mass spectrometry. Analytical Chemistry. 72: 652-7. PMID 10701247 DOI: 10.1021/Ac990998K  0.331
2000 Medzihradszky KF, Campbell JM, Baldwin MA, Falick AM, Juhasz P, Vestal ML, Burlingame AL. The characteristics of peptide collision-induced dissociation using a high-performance MALDI-TOF/TOF tandem mass spectrometer. Analytical Chemistry. 72: 552-8. PMID 10695141 DOI: 10.1021/Ac990809Y  0.336
2000 Chang WW, Huang L, Shen M, Webster C, Burlingame AL, Roberts JK. Patterns of protein synthesis and tolerance of anoxia in root tips of maize seedlings acclimated to a low-oxygen environment, and identification of proteins by mass spectrometry. Plant Physiology. 122: 295-318. PMID 10677424 DOI: 10.1104/Pp.122.2.295  0.325
2000 Cramer R, Burlingame AL. Employing target modifications for the investigation of liquid infrared matrix-assisted laser desorption/ionization mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 14: 53-60. PMID 10623929 DOI: 10.1002/(Sici)1097-0231(20000130)14:2<53::Aid-Rcm833>3.0.Co;2-H  0.309
1999 Yao Y, Huang L, Krutchinsky A, Wong ML, Standing KG, Burlingame AL, Wang CC. Structural and functional characterizations of the proteasome-activating protein PA26 from Trypanosoma brucei. The Journal of Biological Chemistry. 274: 33921-30. PMID 10567354 DOI: 10.1074/Jbc.274.48.33921  0.317
1999 Clauser KR, Baker P, Burlingame AL. Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching. Analytical Chemistry. 71: 2871-82. PMID 10424174 DOI: 10.1021/Ac9810516  0.339
1999 Wolfender JL, Chu F, Ball H, Wolfender F, Fainzilber M, Baldwin MA, Burlingame AL. Identification of tyrosine sulfation in Conus pennaceus conotoxins alpha-PnIA and alpha-PnIB: further investigation of labile sulfo- and phosphopeptides by electrospray, matrix-assisted laser desorption/ionization (MALDI) and atmospheric pressure MALDI mass spectrometry. Journal of Mass Spectrometry : Jms. 34: 447-54. PMID 10226369 DOI: 10.1002/(Sici)1096-9888(199904)34:4<447::Aid-Jms801>3.0.Co;2-1  0.672
1999 Stimson E, Hope J, Chong A, Burlingame AL. Site-specific characterization of the N-linked glycans of murine prion protein by high-performance liquid chromatography/electrospray mass spectrometry and exoglycosidase digestions. Biochemistry. 38: 4885-95. PMID 10200178 DOI: 10.1021/Bi982330Q  0.374
1999 Cramer R, Richter WJ, Stimson E, Burlingame AL. Analysis of phospho- and glycopolypeptides with infrared matrix-assisted laser desorption and ionization. Analytical Chemistry. 70: 4939-44. PMID 9852779 DOI: 10.1021/Ac9803939  0.304
1999 YAO Y, TOTH CR, HUANG L, WONG M, DIAS P, BURLINGAME AL, COFFINO P, WANG CC. α5 subunit in Trypanosoma brucei proteasome can self-assemble to form a cylinder of four stacked heptamer rings Biochemical Journal. 344: 349-358. DOI: 10.1042/Bj3440349  0.316
1999 Wolfender J, Chu F, Ball H, Wolfender F, Fainzilber M, Baldwin MA, Burlingame AL. Identification of tyrosine sulfation in Conus pennaceus conotoxins α-PnIA and α-PnIB: further investigation of labile sulfo- and phosphopeptides by electrospray, matrix-assisted laser desorption/ionization (MALDI) and atmospheric pressure MALDI mass spectrometry Dedicated to the memory of Professor Dr Wilhelm J. Richter. Journal of Mass Spectrometry. 34: 447. DOI: 10.1002/(Sici)1096-9888(199904)34:4<447::Aid-Jms801>3.3.Co;2-T  0.657
1998 Jiménez CR, Burlingame AL. Ultramicroanalysis of peptide profiles in biological samples using MALDI mass spectrometry. Experimental Nephrology. 6: 421-8. PMID 9730658 DOI: 10.1159/000020551  0.309
1998 Qiu Y, Benet LZ, Burlingame AL. Identification of the hepatic protein targets of reactive metabolites of acetaminophen in vivo in mice using two-dimensional gel electrophoresis and mass spectrometry Journal of Biological Chemistry. 273: 17940-17953. PMID 9651401 DOI: 10.1074/Jbc.273.28.17940  0.349
1998 Medzihradszky KF, Besman MJ, Burlingame AL. Reverse-phase capillary high performance liquid chromatography/high performance electrospray ionization mass spectrometry: an essential tool for the characterization of complex glycoprotein digests. Rapid Communications in Mass Spectrometry : Rcm. 12: 472-8. PMID 9586235 DOI: 10.1002/(Sici)1097-0231(19980430)12:8<472::Aid-Rcm182>3.0.Co;2-H  0.349
1998 Jiménez CR, Li KW, Dreisewerd K, Spijker S, Kingston R, Bateman RH, Burlingame AL, Smit AB, van Minnen J, Geraerts WP. Direct mass spectrometric peptide profiling and sequencing of single neurons reveals differential peptide patterns in a small neuronal network. Biochemistry. 37: 2070-6. PMID 9485334 DOI: 10.1021/Bi971848B  0.308
1998 Medzihradszky KF, Besman MJ, Burlingame AL. Structural characterization of site-specific N-glycosylation of recombinant human factor VIII by reversed-phase high-performance liquid chromatography-electrospray ionization mass spectrometry. Analytical Chemistry. 69: 3986-94. PMID 9322435 DOI: 10.1021/Ac970372Z  0.356
1997 Yu Z, Friso G, Miranda JJ, Patel MJ, Lo-Tseng T, Moore EG, Burlingame AL. Structural characterization of human hemoglobin crosslinked by bis(3,5-dibromosalicyl) fumarate using mass spectrometric techniques. Protein Science : a Publication of the Protein Society. 6: 2568-77. PMID 9416606 DOI: 10.1002/Pro.5560061209  0.363
1997 Caldera PS, Yu Z, Knegtel RM, McPhee F, Burlingame AL, Craik CS, Kuntz ID, Ortiz de Montellano PR. Alkylation of a catalytic aspartate group of the SIV protease by an epoxide inhibitor. Bioorganic & Medicinal Chemistry. 5: 2019-27. PMID 9416419 DOI: 10.1016/S0968-0896(97)00131-4  0.332
1997 Matsui NM, Smith DM, Clauser KR, Fichmann J, Andrews LE, Sullivan CM, Burlingame AL, Epstein LB. Immobilized pH gradient two-dimensional gel electrophoresis and mass spectrometric identification of cytokine-regulated proteins in ME-180 cervical carcinoma cells. Electrophoresis. 18: 409-17. PMID 9150919 DOI: 10.1002/Elps.1150180315  0.367
1997 Epstein LB, Smith DM, Matsui NM, Tran HM, Sullivan C, Raineri I, Burlingame AL, Clauser KR, Hall SC, Andrews LE. Identification of cytokine-regulated proteins in normal and malignant cells by the combination of two-dimensional polyacrylamide gel electrophoresis, mass spectrometry, Edman degradation and immunoblotting and approaches to the analysis of their functional roles. Electrophoresis. 17: 1655-70. PMID 8982598 DOI: 10.1002/Elps.1150171103  0.349
1997 Settineri CA, Burlingame AL. Structural characterization of protein glycosylation using HPLC/electrospray ionization mass spectrometry and glycosidase digestion. Methods in Molecular Biology (Clifton, N.J.). 61: 255-78. PMID 8930879 DOI: 10.1385/0-89603-345-7:255  0.37
1997 Wang SX, Klinman JP, Medzihradszky KF, Burlingame AL. The isolation and characterization of active site peptides in lysyl oxidase Techniques in Protein Chemistry. 8: 351-361. DOI: 10.1016/S1080-8914(97)80036-1  0.3
1997 Stimson E, Truong O, Richter WJ, Waterfield MD, Burlingame AL. Enhancement of charge remote fragmentation in protonated peptides by high-energy CID MALDI-TOF-MS using “cold” matrices International Journal of Mass Spectrometry and Ion Processes. 231-240. DOI: 10.1016/S0168-1176(97)00227-9  0.303
1997 Medzihradszky K, Maltby D, Qiu Y, Yu Z, Hall S, Chen Y, Burlingame A. Protein sequence and structural studies employing matrix-assisted laser desorption ionization-high energy collision-induced dissociation International Journal of Mass Spectrometry and Ion Processes. 160: 357-369. DOI: 10.1016/S0168-1176(96)04525-9  0.343
1996 Medzihradszky KF, Adams GW, Burlingame AL, Bateman RH, Green MR. Peptide sequence determination by matrix-assisted laser desorption ionization employing a tandem double focusing magnetic-Orthogonal acceleration time-of-flight mass spectrometer. Journal of the American Society For Mass Spectrometry. 7: 1-10. PMID 24202789 DOI: 10.1016/1044-0305(95)00621-4  0.327
1996 Nakamura T, Yu Z, Fainzilber M, Burlingame AL. Mass spectrometric-based revision of the structure of a cysteine-rich peptide toxin with gamma-carboxyglutamic acid, TxVIIA, from the sea snail, Conus textile. Protein Science : a Publication of the Protein Society. 5: 524-30. PMID 8868490 DOI: 10.1002/Pro.5560050315  0.347
1996 Burlingame AL. Characterization of protein glycosylation by mass spectrometry. Current Opinion in Biotechnology. 7: 4-10. PMID 8742373 DOI: 10.1016/S0958-1669(96)80088-7  0.349
1996 Wang SX, Mure M, Medzihradszky KF, Burlingame AL, Brown DE, Dooley DM, Smith AJ, Kagan HM, Klinman JP. A crosslinked cofactor in lysyl oxidase: redox function for amino acid side chains. Science (New York, N.Y.). 273: 1078-84. PMID 8688089 DOI: 10.1126/Science.273.5278.1078  0.301
1996 Settineri CA, Chen YD, Jiang K, Zhang SZ, Burlingame AL. Characterization of the N-and O-Linked Oligosaccharides from glucoamylase E4 from Monascus rubignosus using electrospray mass spectrometry and glycosidase digestion Techniques in Protein Chemistry. 7: 173-184. DOI: 10.1016/S1080-8914(96)80021-4  0.347
1996 Yates JR, Eng JK, Clauser KR, Burlingame AL. Search of sequence databases with uninterpreted high-energy collision-induced dissociation spectra of peptides Journal of the American Society For Mass Spectrometry. 7: 1089-1098. DOI: 10.1016/S1044-0305(96)00079-7  0.325
1996 Lipniunas PH, Townsend RR, Burlingame AL, Hindsgaul O. High-energy collision-induced dissociation mass spectrometry of synthetic mannose-6-phosphate oligosaccharides Journal of the American Society For Mass Spectrometry. 7: 182-188. DOI: 10.1016/1044-0305(95)00635-4  0.331
1995 Clauser KR, Hall SC, Smith DM, Webb JW, Andrews LE, Tran HM, Epstein LB, Burlingame AL. Rapid mass spectrometric peptide sequencing and mass matching for characterization of human melanoma proteins isolated by two-dimensional PAGE Proceedings of the National Academy of Sciences of the United States of America. 92: 5072-5076. PMID 7761450 DOI: 10.1073/Pnas.92.11.5072  0.389
1995 Schindler PA, Settineri CA, Collet X, Fielding CJ, Burlingame AL. Site-specific detection and structural characterization of the glycosylation of human plasma proteins lecithin:cholesterol acyltransferase and apolipoprotein D using HPLC/electrospray mass spectrometry and sequential glycosidase digestion. Protein Science : a Publication of the Protein Society. 4: 791-803. PMID 7613477 DOI: 10.1002/Pro.5560040419  0.361
1995 Tsutakawa SE, Medzihradszky KF, Flint AJ, Burlingame AL, Koshland DE. Determination of in vivo phosphorylation sites in protein kinase C Journal of Biological Chemistry. 270: 26807-26812. PMID 7592921 DOI: 10.1074/Jbc.270.45.26807  0.342
1995 Iwahara S, Satoh H, Song DX, Webb J, Burlingame AL, Nagae Y, Muller-Eberhard U. Purification, characterization, and cloning of a heme-binding protein (23 kDa) in rat liver cytosol. Biochemistry. 34: 13398-406. PMID 7577926 DOI: 10.1021/Bi00041A017  0.304
1995 Zia-Amirhosseini P, Ding A, Burlingame AL, McDonagh AF, Benet LZ. Synthesis and mass-spectrometric characterization of human serum albumins modified by covalent binding of two non-steroidal anti-inflammatory drugs: tolmetin and zomepirac. The Biochemical Journal. 431-5. PMID 7487878 DOI: 10.1042/Bj3110431  0.305
1994 Robertson JG, Adams GW, Medzihradszky KF, Burlingame AL, Villafranca JJ. Complete assignment of disulfide bonds in bovine dopamine beta-hydroxylase. Biochemistry. 33: 11563-75. PMID 7918370 DOI: 10.1021/Bi00204A019  0.323
1994 Settineri CA, Burlingame AL. Strategies for the Characterization of Carbohydrates from Glycoproteins by Mass Spectrometry Techniques in Protein Chemistry. 5: 97-104. DOI: 10.1016/B978-0-12-194710-1.50016-3  0.342
1994 Medzihradszky KF, Burlingame AL. The Advantages and Versatility of a High-Energy Collision-Induced Dissociation-Based Strategy for the Sequence and Structural Determination of Proteins Methods. 6: 284-303. DOI: 10.1006/Meth.1994.1030  0.339
1994 Brown J, Hann B, Medzihradszky K, Niwa M, Burlingame A, Walter P. Subunits of the Saccharomyces cerevisiae signal recognition particle required for its functional expression. The Embo Journal. 13: 4390-4400. DOI: 10.1002/J.1460-2075.1994.Tb06759.X  0.334
1993 Ding A, Ojingwa JC, McDonagh AF, Burlingame AL, Benet LZ. Evidence for covalent binding of acyl glucuronides to serum albumin via an imine mechanism as revealed by tandem mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 90: 3797-801. PMID 8483897 DOI: 10.1073/Pnas.90.9.3797  0.384
1993 Kaur S, Pongracz K, Bodell WJ, Burlingame AL. Bis(hydroxyphenylethyl)deoxyguanosine adducts identified by [32P]-postlabeling and four-sector tandem mass spectrometry: unanticipated adducts formed upon treatment of DNA with styrene 7,8-oxide. Chemical Research in Toxicology. 6: 125-32. PMID 8448342 DOI: 10.1021/Tx00031A019  0.331
1993 Stahl N, Baldwin MA, Teplow DB, Hood L, Gibson BW, Burlingame AL, Prusiner SB. Structural studies of the scrapie prion protein using mass spectrometry and amino acid sequencing. Biochemistry. 32: 1991-2002. PMID 8448158 DOI: 10.1021/Bi00059A016  0.367
1993 Hall SC, Smith DM, Masiarz FR, Soo VW, Tran HM, Epstein LB, Burlingame AL. Mass spectrometric and Edman sequencing of lipocortin I isolated by two-dimensional SDS/PAGE of human melanoma lysates. Proceedings of the National Academy of Sciences of the United States of America. 90: 1927-31. PMID 8446611 DOI: 10.1073/Pnas.90.5.1927  0.357
1993 Burlingame AL. Mass Spectrometry in Protein Sequence and Structural Investigations Techniques in Protein Chemistry. 3-21. DOI: 10.1016/B978-0-12-058757-5.50006-8  0.365
1993 Baldwin MA, Burlingame AL, Prusiner SB. Mass spectrometric analysis of a GPI-anchored protein: The scrapie prion protein Trac Trends in Analytical Chemistry. 12: 239-248. DOI: 10.1016/0165-9936(93)87063-4  0.366
1992 Stahl N, Baldwin MA, Hecker R, Pan KM, Burlingame AL, Prusiner SB. Glycosylinositol phospholipid anchors of the scrapie and cellular prion proteins contain sialic acid. Biochemistry. 31: 5043-53. PMID 1350920 DOI: 10.1021/Bi00136A600  0.304
1992 Sanders DA, Gillece-Castro BL, Burlingame AL, Koshland DE. Phosphorylation site of NtrC, a protein phosphatase whose covalent intermediate activates transcription Journal of Bacteriology. 174: 5117-5122. PMID 1321122 DOI: 10.1128/Jb.174.15.5117-5122.1992  0.33
1992 Hall SC, Schindler PA, Masiarz FR, Burlingame AL. Tandem Mass Spectrometric Sequencing of Proteins Isolated From 1- and 2-Dimensional Polyacrylamide Gel Electrophoresis Techniques in Protein Chemistry. 525-532. DOI: 10.1016/B978-0-12-058756-8.50058-4  0.338
1991 Settineri CA, Medzihradszky KF, Masiarz FR, Burlingame AL, Chu C, George-Nascimento C. Characterization of O-glycosylation sites in recombinant B-chain of platelet-derived growth factor expressed in yeast using liquid secondary ion mass spectrometry, tandem mass spectrometry and Edman sequence analysis. Biomedical & Environmental Mass Spectrometry. 19: 665-76. PMID 2076465 DOI: 10.1002/Bms.1200191106  0.367
1991 Gillece-Castro BL, Burlingame AL. Oligosaccharide characterization with high-energy collision-induced dissociation mass spectrometry. Methods in Enzymology. 193: 689-712. PMID 2074842 DOI: 10.1016/0076-6879(90)93445-Q  0.319
1991 Poulter L, Burlingame AL. Desorption mass spectrometry of oligosaccharides coupled with hydrophobic chromophores. Methods in Enzymology. 193: 661-89. PMID 2074841 DOI: 10.1016/0076-6879(90)93444-P  0.349
1991 Baldwin MA, Stahl N, Reinders LG, Gibson BW, Prusiner SB, Burlingame AL. Permethylation and tandem mass spectrometry of oligosaccharides having free hexosamine: analysis of the glycoinositol phospholipid anchor glycan from the scrapie prion protein. Analytical Biochemistry. 191: 174-82. PMID 1981823 DOI: 10.1016/0003-2697(90)90405-X  0.372
1991 Stahl N, Baldwin MA, Burlingame AL, Prusiner SB. Identification of glycoinositol phospholipid linked and truncated forms of the scrapie prion protein. Biochemistry. 29: 8879-84. PMID 1980209 DOI: 10.1021/Bi00490A001  0.318
1991 Medzihradszky KF, Gillece-Castro BL, Settineri CA, Townsend RR, Masiarz FR, Burlingame AL. Structure determination of O-linked glycopeptides by tandem mass spectrometry. Biomedical & Environmental Mass Spectrometry. 19: 777-81. PMID 1708302 DOI: 10.1002/Bms.1200191205  0.309
1990 BALDWIN M, STAHL N, BURLINGAME A, PRUSINER S. Structure determination of glycoinositol phospholipid anchors by permethylation and tandem mass spectrometry Methods. 1: 306-314. DOI: 10.1016/S1046-2023(05)80332-9  0.356
1990 Baldwin MA, Falick AM, Gibson BW, Prusiner SB, Stahl N, Burlingame AL. Tandem mass spectrometry of peptides with N-terminal glutamine studies on a prion protein peptide Journal of the American Society For Mass Spectrometry. 1: 258-264. DOI: 10.1016/1044-0305(90)85043-L  0.311
1990 Burlingame AL, Walls FC, Falick A, Evans S, Riddoch A, Buchanan R. Experience in the use of a 4-sector instrument and array detector and its application in peptide analysis Rapid Communications in Mass Spectrometry. 4: 447-448. DOI: 10.1002/Rcm.1290041023  0.309
1989 Poulter L, Earnest JP, Stroud RM, Burlingame AL. Structure, oligosaccharide structures, and posttranslationally modified sites of the nicotinic acetylcholine receptor Proceedings of the National Academy of Sciences of the United States of America. 86: 6645-6649. PMID 2771948 DOI: 10.1073/Pnas.86.17.6645  0.338
1989 Falick AM, Mel SF, Stroud RM, Burlingame AL. 15 – A New Strategy For Mapping The Topography Of A Transmembrane Protein Using Mass Spectrometry1 Techniques in Protein Chemistry. 152-159. DOI: 10.1016/B978-0-12-682001-0.50022-1  0.302
1988 Poulter L, Earnest JP, Stroud RM, Burlingame AL. Cesium ion liquid secondary ion mass spectrometry of membrane‐bound glycoproteins: Structural and topological considerations of acetylcholine receptor from Torpedo californica Biological Mass Spectrometry. 16: 25-30. PMID 3242677 DOI: 10.1002/Bms.1200160105  0.329
1988 Webb JW, Jiang K, Gillece-Castro BL, Tarentino AL, Plummer TH, Byrd JC, Fisher SJ, Burlingame AL. Structural characterization of intact, branched oligosaccharides by high performance liquid chromatography and liquid secondary ion mass spectrometry Analytical Biochemistry. 169: 337-349. PMID 3132867 DOI: 10.1016/0003-2697(88)90293-X  0.336
1987 Gillece-Castro BL, Fisher SJ, Tarentino AL, Peterson DL, Burlingame AL. Structure of the oligosaccharide portion of human hepatitis B surface antigen. Archives of Biochemistry and Biophysics. 256: 194-201. PMID 3606122 DOI: 10.1016/0003-9861(87)90437-1  0.31
1985 Wickramanayake PP, Arbogast BL, Buhler DR, Deinzer ML, Burlingame AL. Alkylation of nucleosides and nucleotides by dehydroretronecine; characterization of covalent adducts by liquid secondary ion mass spectrometry Journal of the American Chemical Society. 107: 2485-2488. DOI: 10.1021/Ja00294A047  0.306
1981 Linscheid M, D'Angona J, Burlingame AL, Dell A, Ballou CE. Field desorption mass spectrometry of oligosaccharides. Proceedings of the National Academy of Sciences of the United States of America. 78: 1471-5. PMID 6940169 DOI: 10.1073/Pnas.78.3.1471  0.31
1979 Burlingame AL. Assessment of the trace organic molecular composition of industrial and municipal wastewater effluents by capillary gas chromatography/real-time high-resolution mass spectrometry: a preliminary report. Ecotoxicology and Environmental Safety. 1: 111-50. PMID 617082 DOI: 10.1016/0147-6513(77)90019-7  0.309
1977 Straub KM, Meehan T, Burlingame AL, Calvin M. Identification of the major adducts formed by reaction of benzo(a)pyrene diol epoxide with DNA in vitro. Proceedings of the National Academy of Sciences of the United States of America. 74: 5285-9. PMID 271953 DOI: 10.1073/Pnas.74.12.5285  0.463
1974 Kimble BJ, Cox RE, McPherron RV, Olsen RW, Roitman E, Walls FC, Burlingame AL. Real-time gas chromatography/high resolution mass spectrometry and its application to the analysis of physiological fluids Journal of Chromatographic Science. 12: 647-655. PMID 4417466 DOI: 10.1093/Chromsci/12.11.647  0.326
1974 Derrick PJ, Falick AM, Burlingame AL, Djerassi C. Hydrogen deuterium randomization in 7-methyl-4-octanone-7-d1 at times of 10-11-10-5 sec following field ionization Journal of the American Chemical Society. 96: 1054-1059. DOI: 10.1021/Ja00811A017  0.353
1973 Simoneit BR, Smith DH, Eglinton G, Burlingame AL. Application of real-time mass spectrometric techniques to environmental organic geochemistry. II. Organic matter in San Francisco Bay area water. Archives of Environmental Contamination and Toxicology. 1: 193-208. PMID 4776414 DOI: 10.1007/Bf01985744  0.301
1973 Longevialle P, Smith DH, Burlingame AL, Fales HM, Highet RJ. High resolution mass spectrometry in molecular structure studies—V: The fragmentation of amaryllis alkaloids in the crinine series Organic Mass Spectrometry. 7: 401-415. DOI: 10.1002/Oms.1210070405  0.318
1971 Smith DH, Olsen RW, Walls FC, Burlingame AL. Real-time mass spectrometry. LOGOS, a generalized mass spectrometry computer system for high and low resolution, gas chromatography/mass spectrometry, and closed-loop applications Analytical Chemistry. 43: 1796-1806. DOI: 10.1021/Ac60307A023  0.316
1970 Burlingame AL, Calvin M, Han J, Henderson W, Reed W, Simoneit BR. Lunar organic compounds: search and characterization. Science (New York, N.Y.). 167: 751-2. PMID 17781577 DOI: 10.1126/Science.167.3918.751  0.419
1969 Han J, Simoneit BR, Burlingame AL, Calvin M. Organic Analysis on the Pueblito de Allende Meteorite Nature. 222: 364-365. DOI: 10.1038/222364A0  0.427
1968 Burlingame AL, Smith DH, Olsen RW. High resolution mass spectrometry in molecular structure studies. XIV. Real-time data acquistion, display, and subsequent processing in high resolution mass spectrometry Analytical Chemistry. 40: 13-19. DOI: 10.1021/Ac60257A037  0.316
1967 Burlingame AL, Fenselau C, Richter WJ, Dauben WG, Shaffer GW, Vietmeyer ND. High resolution mass spectrometry in molecular structure studies. XIII. Mechanism of electron impact induced elimination of ketene in conjugated cyclohexenones and correlations with photochemistry Journal of the American Chemical Society. 89: 3346-3347. DOI: 10.1021/ja00989a043  0.449
1967 Burlingame AL, Fenselau C, Richter WJ, Dauben WG, Shaffer GW, Vietmeyer ND. On the mechanism of electron impact induced elimination of ketene in conjugated cyclohexenones and correlations with photochemistry [6] Journal of the American Chemical Society. 89: 3346-3347. DOI: 10.1021/Ja00989A043  0.461
1967 Burlingame AL, Fenselau C, Richter WJ. High-resolution mass spectrometry in molecular structure studies. IV. Mechanistic aspects of the fragmentation of widdrol Journal of the American Chemical Society. 89: 3232-3235. DOI: 10.1021/Ja00989A025  0.525
1966 VAN HOEVEN W, HAUG P, BURLINGAME AL, CALVIN M. Hydrocarbons from Australian Oil, Two Hundred Million Years Old Nature. 211: 1361-1365. DOI: 10.1038/2111361A0  0.409
1966 Kupchan SM, Cassady JM, Kelsey JE, Schnoes HK, Smith DH, Burlingame AL. Structural elucidation and high-resolution mass spectrometry of gaillardin, a new cytotoxic sesquiterpene lactone Journal of the American Chemical Society. 88: 5292-5302. DOI: 10.1021/Ja00974A049  0.304
1966 Johns R, Belsky T, McCarthy E, Burlingame A, Haug P, Schnoes H, Richter W, Calvin M. The organic geochemistry of ancient sediments—Part II Geochimica Et Cosmochimica Acta. 30: 1191-1222. DOI: 10.1016/0016-7037(66)90120-7  0.425
1965 Belsky T, Johns RB, McCARTHY ED, Burlingame AL, Richter W, Calvin M. Evidence of Life Processes in a Sediment Two and a Half Billion Years Old Nature. 206: 446-447. DOI: 10.1038/206446A0  0.406
1964 Eglinton G, Scott PM, Belsky T, Burlingame AL, Calvin M. Hydrocarbons of Biological Origin from a One-Billion-Year-Old Sediment. Science (New York, N.Y.). 145: 263-4. PMID 17833034 DOI: 10.1126/Science.145.3629.263  0.465
1964 Eglinton G, Scott PM, Belsky T, Burlingame AL, Calvin M, PECJ. Hydrocarbons Of Biological Origin From A One-Billion Year Oldsediment Lawrence Berkeley National Laboratory. DOI: 10.2172/920073  0.456
1964 Biemann K, Bommer P, Burlingame AL, McMurray WJ. High-Resolution Mass Spectra of Ajmaline and Related Alkaloids Journal of the American Chemical Society. 86: 4624-4628. DOI: 10.1021/Ja01075A021  0.438
1963 Biemann K, Bommer P, Burlingame A, McMurray W. The high-resolution mass spectra of ajmalidine and related substances Tetrahedron Letters. 4: 1969-1973. DOI: 10.1016/S0040-4039(01)90951-7  0.435
1963 Gorman M, Burlingame A, Biemann K. Application of mass spectrometry to structure problems. The structure of quebrachidine Tetrahedron Letters. 4: 39-46. DOI: 10.1016/S0040-4039(01)90573-8  0.435
1963 Renner U, Prins DA, Burlingame AL, Biemann K. Die Struktur der 2-Acylindol-Alkaloide Vobasin, Dregamin und Tabernaemontanin Helvetica Chimica Acta. 46: 2186-2208. DOI: 10.1002/hlca.19630460639  0.363
1962 Schnoes H, Burlingame A, Biemann K. Application of mass spectrometry to structure problems: the occurrence of eburnamenine and related alkaloids in and Tetrahedron Letters. 3: 993-999. DOI: 10.1016/S0040-4039(00)70945-2  0.441
1962 Biemann K, Burlingame A, Stauffacher D. Application of mass spectrometry to structure problems: condylocarpine. Tetrahedron Letters. 3: 527-532. DOI: 10.1016/S0040-4039(00)70507-7  0.443
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