Alma L. Burlingame - Publications

Affiliations: 
University of California, San Francisco, San Francisco, CA 
Area:
Mass spectrometry
Website:
http://msf.ucsf.edu/staff/burlingame.html

91 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Sahoo PK, Lee SJ, Jaiswal PB, Alber S, Kar AN, Miller-Randolph S, Taylor EE, Smith T, Singh B, Ho TS, Urisman A, Chand S, Pena EA, Burlingame AL, Woolf CJ, et al. Axonal G3BP1 stress granule protein limits axonal mRNA translation and nerve regeneration. Nature Communications. 9: 3358. PMID 30135423 DOI: 10.1038/s41467-018-05647-x  0.48
2018 Rozenbaum M, Rajman M, Rishal I, Koppel I, Koley S, Medzihradszky KF, Oses-Prieto JA, Kawaguchi R, Amieux PS, Burlingame AL, Coppola G, Fainzilber M. Translatome Regulation in Neuronal Injury and Axon Regrowth. Eneuro. 5. PMID 29756027 DOI: 10.1523/ENEURO.0276-17.2018  0.48
2018 Terenzio M, Koley S, Samra N, Rishal I, Zhao Q, Sahoo PK, Urisman A, Marvaldi L, Oses-Prieto JA, Forester C, Gomes C, Kalinski AL, Di Pizio A, Doron-Mandel E, Perry RB, ... ... Burlingame AL, et al. Locally translated mTOR controls axonal local translation in nerve injury. Science (New York, N.Y.). 359: 1416-1421. PMID 29567716 DOI: 10.1126/science.aan1053  0.48
2018 MacRae AJ, Mayerle M, Hrabeta-Robinson E, Chalkley RJ, Guthrie C, Burlingame AL, Jurica M. Prp8 positioning of U5 snRNA is linked to 5' splice site recognition. Rna (New York, N.Y.). PMID 29487104 DOI: 10.1261/rna.065458.117  0.36
2018 Forester CM, Zhao Q, Phillips NJ, Urisman A, Chalkley RJ, Oses-Prieto JA, Zhang L, Ruggero D, Burlingame AL. Revealing nascent proteomics in signaling pathways and cell differentiation. Proceedings of the National Academy of Sciences of the United States of America. PMID 29467287 DOI: 10.1073/pnas.1707514115  0.36
2017 Leon J, Moreno AJ, Garay BI, Chalkley RJ, Burlingame AL, Wang D, Dubal DB. Peripheral Elevation of a Klotho Fragment Enhances Brain Function and Resilience in Young, Aging, and α-Synuclein Transgenic Mice. Cell Reports. 20: 1360-1371. PMID 28793260 DOI: 10.1016/j.celrep.2017.07.024  0.36
2017 Ni W, Xu SL, González-Grandío E, Chalkley RJ, Huhmer AFR, Burlingame AL, Wang ZY, Quail PH. PPKs mediate direct signal transfer from phytochrome photoreceptors to transcription factor PIF3. Nature Communications. 8: 15236. PMID 28492231 DOI: 10.1038/ncomms15236  0.36
2017 Xu SL, Chalkley RJ, Maynard JC, Wang W, Ni W, Jiang X, Shin K, Cheng L, Savage D, Hühmer AF, Burlingame AL, Wang ZY. Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. PMID 28154133 DOI: 10.1073/pnas.1610452114  0.36
2016 Robinson PJ, Trnka MJ, Bushnell DA, Davis RE, Mattei PJ, Burlingame AL, Kornberg RD. Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex. Cell. 166: 1411-1422.e16. PMID 27610567 DOI: 10.1016/j.cell.2016.08.050  0.48
2016 Wei CQ, Chien CW, Ai LF, Zhao J, Zhang Z, Li KH, Burlingame AL, Sun Y, Wang ZY. The Arabidopsis B-BOX protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 27523280 DOI: 10.1016/j.jgg.2016.05.007  0.48
2016 Perry RB, Rishal I, Doron-Mandel E, Kalinski AL, Medzihradszky KF, Terenzio M, Alber S, Koley S, Lin A, Rozenbaum M, Yudin D, Sahoo PK, Gomes C, Shinder V, Geraisy W, ... ... Burlingame AL, et al. Nucleolin-Mediated RNA Localization Regulates Neuron Growth and Cycling Cell Size. Cell Reports. PMID 27477284 DOI: 10.1016/j.celrep.2016.07.005  0.48
2016 To TL, Medzihradszky KF, Burlingame AL, DeGrado WF, Jo H, Shu X. Photoactivatable protein labeling by singlet oxygen mediated reactions. Bioorganic & Medicinal Chemistry Letters. PMID 27220724 DOI: 10.1016/j.bmcl.2016.05.034  0.48
2016 Lewis BA, Burlingame AL, Myers SA. Human RNA polymerase II promoter recruitment in vitro is regulated by OGT. The Journal of Biological Chemistry. PMID 27129214 DOI: 10.1074/jbc.M115.684365  0.48
2016 Xu SL, Medzihradszky KF, Wang ZY, Burlingame AL, Chalkley RJ. N-Glycopeptide Profiling in Arabidopsis Inflorescence. Molecular & Cellular Proteomics : McP. PMID 27067053 DOI: 10.1074/mcp.M115.056101  0.36
2016 Myers SA, Peddada S, Chatterjee N, Freidreich T, Tomoda K, Krings G, Thomas S, Broeker M, Maynard J, Thomson M, Pollard K, Yamanaka S, Burlingame AL, Panning B. SOX2 O-GlcNAcylation alters its protein-protein interactions and genomic occupancy to modulate gene expression in pluripotent cells. Elife. 5. PMID 26949256 DOI: 10.7554/eLife.10647  0.48
2016 Doron-Mandel E, Alber S, Oses JA, Medzihradszky KF, Burlingame AL, Fainzilber M, Twiss JL, Lee SJ. Isolation and analyses of axonal ribonucleoprotein complexes. Methods in Cell Biology. 131: 467-86. PMID 26794529 DOI: 10.1016/bs.mcb.2015.06.010  0.48
2015 Zhang B, Wang X, Zhao Z, Wang R, Huang X, Zhu Y, Yuan L, Wang Y, Xu X, Burlingame AL, Gao Y, Sun Y, Tang W. OsBRI1 activates BR signaling by preventing binding between the TPR and kinase domains of OsBSK3 via phosphorylation. Plant Physiology. PMID 26697897 DOI: 10.1104/pp.15.01668  0.48
2015 Rys JP, DuFort CC, Monteiro DA, Baird MA, Oses-Prieto JA, Chand S, Burlingame AL, Davidson MW, Alliston TN. Discrete spatial organization of TGFβ receptors couples receptor multimerization and signaling to cellular tension. Elife. 4. PMID 26652004 DOI: 10.7554/eLife.09300  0.48
2015 Wang R, Liu M, Yuan M, Oses-Prieto JA, Cai X, Sun Y, Burlingame AL, Wang ZY, Tang W. The brassinosteroid-activated BRI1 receptor kinase is switched off by dephosphorylation mediated by cytoplasm-localized PP2A B' subunits. Molecular Plant. PMID 26517938 DOI: 10.1016/j.molp.2015.10.007  0.48
2015 Didonna A, Isobe N, Caillier SJ, Li KH, Burlingame AL, Hauser SL, Baranzini SE, Patsopoulos NA, Oksenberg JR. A non-synonymous single-nucleotide polymorphism associated with multiple sclerosis risk affects the EVI5 interactome. Human Molecular Genetics. PMID 26433934 DOI: 10.1093/hmg/ddv412  0.48
2015 Kim EJ, Youn JH, Park CH, Kim TW, Guan S, Xu S, Burlingame AL, Kim YP, Kim SK, Wang ZY, Kim TW. Oligomerization between BSU1 Family Members Potentiates Brassinosteroid Signaling in Arabidopsis. Molecular Plant. PMID 26432287 DOI: 10.1016/j.molp.2015.09.012  0.48
2015 Robinson PJ, Trnka MJ, Pellarin R, Greenberg CH, Bushnell DA, Davis R, Burlingame AL, Sali A, Kornberg RD. Molecular architecture of the yeast Mediator complex. Elife. 4. PMID 26402457 DOI: 10.7554/eLife.08719  0.48
2015 Lu J, Trnka MJ, Roh SH, Robinson PJ, Shiau C, Fujimori DG, Chiu W, Burlingame AL, Guan S. Improved Peak Detection and Deconvolution of Native Electrospray Mass Spectra from Large Protein Complexes. Journal of the American Society For Mass Spectrometry. PMID 26323614 DOI: 10.1007/s13361-015-1235-6  0.48
2015 Guan S, Trnka MJ, Bushnell DA, Robinson PJ, Gestwicki JE, Burlingame AL. Deconvolution method for specific and nonspecific binding of ligand to multiprotein complex by native mass spectrometry. Analytical Chemistry. 87: 8541-6. PMID 26189511 DOI: 10.1021/acs.analchem.5b02258  0.48
2014 Cho Y, Di Liberto V, Carlin D, Abe N, Li KH, Burlingame AL, Guan S, Michaelevski I, Cavalli V. Syntaxin13 expression is regulated by mammalian target of rapamycin (mTOR) in injured neurons to promote axon regeneration. The Journal of Biological Chemistry. 289: 15820-32. PMID 24737317 DOI: 10.1074/jbc.M113.536607  0.48
2014 Deng Z, Oses-Prieto JA, Kutschera U, Tseng TS, Hao L, Burlingame AL, Wang ZY, Briggs WR. Blue light-induced proteomic changes in etiolated Arabidopsis seedlings. Journal of Proteome Research. 13: 2524-33. PMID 24712693 DOI: 10.1021/pr500010z  0.48
2014 Hirsch J, Chalkley RJ, Bentley T, Burlingame AL, Frank JA. Double impact of cigarette smoke and mechanical ventilation on the alveolar epithelial type II cell. Critical Care (London, England). 18: R50. PMID 24666941 DOI: 10.1186/cc13795  0.48
2014 Carr SA, Abbatiello SE, Ackermann BL, Borchers C, Domon B, Deutsch EW, Grant RP, Hoofnagle AN, Hüttenhain R, Koomen JM, Liebler DC, Liu T, MacLean B, Mani DR, Mansfield E, ... ... Burlingame AL, et al. Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach. Molecular & Cellular Proteomics : McP. 13: 907-17. PMID 24443746 DOI: 10.1074/mcp.M113.036095  0.48
2013 Wiita AP, Ziv E, Wiita PJ, Urisman A, Julien O, Burlingame AL, Weissman JS, Wells JA. Global cellular response to chemotherapy-induced apoptosis. Elife. 2: e01236. PMID 24171104 DOI: 10.7554/eLife.01236  0.48
2013 Ni W, Xu SL, Chalkley RJ, Pham TN, Guan S, Maltby DA, Burlingame AL, Wang ZY, Quail PH. Multisite light-induced phosphorylation of the transcription factor PIF3 is necessary for both its rapid degradation and concomitant negative feedback modulation of photoreceptor phyB levels in Arabidopsis. The Plant Cell. 25: 2679-98. PMID 23903316 DOI: 10.1105/tpc.113.112342  0.36
2013 Nishino M, Choy JW, Gushwa NN, Oses-Prieto JA, Koupparis K, Burlingame AL, Renslo AR, McKerrow JH, Taunton J. Hypothemicin, a fungal natural product, identifies therapeutic targets in Trypanosoma brucei Elife. 2013. PMID 23853713 DOI: 10.7554/eLife.00712  0.48
2013 Aebersold R, Burlingame AL, Bradshaw RA. Western blots versus selected reaction monitoring assays: time to turn the tables? Molecular & Cellular Proteomics : McP. 12: 2381-2. PMID 23756428 DOI: 10.1074/mcp.E113.031658  0.48
2013 Susuki K, Chang KJ, Zollinger DR, Liu Y, Ogawa Y, Eshed-Eisenbach Y, Dours-Zimmermann MT, Oses-Prieto JA, Burlingame AL, Seidenbecher CI, Zimmermann DR, Oohashi T, Peles E, Rasband MN. Three mechanisms assemble central nervous system nodes of Ranvier. Neuron. 78: 469-82. PMID 23664614 DOI: 10.1016/j.neuron.2013.03.005  0.48
2013 Gautam V, Trinidad JC, Rimerman RA, Costa BM, Burlingame AL, Monaghan DT. Nedd4 is a specific E3 ubiquitin ligase for the NMDA receptor subunit GluN2D. Neuropharmacology. 74: 96-107. PMID 23639431 DOI: 10.1016/j.neuropharm.2013.04.035  0.48
2013 Shiau C, Trnka MJ, Bozicevic A, Ortiz Torres I, Al-Sady B, Burlingame AL, Narlikar GJ, Fujimori DG. Reconstitution of nucleosome demethylation and catalytic properties of a Jumonji histone demethylase. Chemistry & Biology. 20: 494-9. PMID 23601638 DOI: 10.1016/j.chembiol.2013.03.008  0.48
2013 Greninger AL, Knudsen GM, Betegon M, Burlingame AL, DeRisi JL. ACBD3 interaction with TBC1 domain 22 protein is differentially affected by enteroviral and kobuviral 3A protein binding. Mbio. 4: e00098-13. PMID 23572552 DOI: 10.1128/mBio.00098-13  0.48
2013 Liu W, Baker SS, Trinidad J, Burlingame AL, Baker RD, Forte JG, Virtuoso LP, Egilmez NK, Zhu L. Inhibition of lysosomal enzyme activities by proton pump inhibitors. Journal of Gastroenterology. 48: 1343-52. PMID 23478938 DOI: 10.1007/s00535-013-0774-5  0.48
2013 Choy JW, Bryant C, Calvet CM, Doyle PS, Gunatilleke SS, Leung SS, Ang KK, Chen S, Gut J, Oses-Prieto JA, Johnston JB, Arkin MR, Burlingame AL, Taunton J, Jacobson MP, et al. Chemical-biological characterization of a cruzain inhibitor reveals a second target and a mammalian off-target. Beilstein Journal of Organic Chemistry. 9: 15-25. PMID 23400640 DOI: 10.3762/bjoc.9.3  0.48
2013 Le DD, Cortesi AT, Myers SA, Burlingame AL, Fujimori DG. Site-specific and regiospecific installation of methylarginine analogues into recombinant histones and insights into effector protein binding. Journal of the American Chemical Society. 135: 2879-82. PMID 23398247 DOI: 10.1021/ja3108214  0.48
2013 Kaasik K, Kivimäe S, Allen JJ, Chalkley RJ, Huang Y, Baer K, Kissel H, Burlingame AL, Shokat KM, Ptáček LJ, Fu YH. Glucose sensor O-GlcNAcylation coordinates with phosphorylation to regulate circadian clock. Cell Metabolism. 17: 291-302. PMID 23395175 DOI: 10.1016/j.cmet.2012.12.017  0.36
2013 Just S, Illing S, Trester-Zedlitz M, Lau EK, Kotowski SJ, Miess E, Mann A, Doll C, Trinidad JC, Burlingame AL, von Zastrow M, Schulz S. Differentiation of opioid drug effects by hierarchical multi-site phosphorylation. Molecular Pharmacology. 83: 633-9. PMID 23239825 DOI: 10.1124/mol.112.082875  0.48
2013 Zhuang M, Guan S, Wang H, Burlingame AL, Wells JA. Substrates of IAP ubiquitin ligases identified with a designed orthogonal E3 ligase, the NEDDylator. Molecular Cell. 49: 273-82. PMID 23201124 DOI: 10.1016/j.molcel.2012.10.022  0.48
2013 Trinidad JC, Thalhammer A, Burlingame AL, Schoepfer R. Activity-dependent protein dynamics define interconnected cores of co-regulated postsynaptic proteins. Molecular & Cellular Proteomics : McP. 12: 29-41. PMID 23035237 DOI: 10.1074/mcp.M112.019976  0.48
2012 Robinson PJ, Bushnell DA, Trnka MJ, Burlingame AL, Kornberg RD. Structure of the mediator head module bound to the carboxy-terminal domain of RNA polymerase II. Proceedings of the National Academy of Sciences of the United States of America. 109: 17931-5. PMID 23071300 DOI: 10.1073/pnas.1215241109  0.48
2012 O'Donoghue AJ, Eroy-Reveles AA, Knudsen GM, Ingram J, Zhou M, Statnekov JB, Greninger AL, Hostetter DR, Qu G, Maltby DA, Anderson MO, Derisi JL, McKerrow JH, Burlingame AL, Craik CS. Global identification of peptidase specificity by multiplex substrate profiling. Nature Methods. 9: 1095-100. PMID 23023596 DOI: 10.1038/nmeth.2182  0.48
2012 Shimbo K, Hsu GW, Nguyen H, Mahrus S, Trinidad JC, Burlingame AL, Wells JA. Quantitative profiling of caspase-cleaved substrates reveals different drug-induced and cell-type patterns in apoptosis. Proceedings of the National Academy of Sciences of the United States of America. 109: 12432-7. PMID 22802652 DOI: 10.1073/pnas.1208616109  0.48
2012 Trinidad JC, Barkan DT, Gulledge BF, Thalhammer A, Sali A, Schoepfer R, Burlingame AL. Global identification and characterization of both O-GlcNAcylation and phosphorylation at the murine synapse. Molecular & Cellular Proteomics : McP. 11: 215-29. PMID 22645316 DOI: 10.1074/mcp.O112.018366  0.48
2012 Xu SL, Chalkley RJ, Wang ZY, Burlingame AL. Identification of O-linked β-D-N-acetylglucosamine-modified proteins from Arabidopsis. Methods in Molecular Biology (Clifton, N.J.). 876: 33-45. PMID 22576084 DOI: 10.1007/978-1-61779-809-2_3  0.36
2012 Burlingame AL, Stults JT. Mass spectrometry: reconnaissance at the Frontiers of biology. Molecular & Cellular Proteomics : McP. 11: 1-2. PMID 22511459 DOI: 10.1074/mcp.E112.019653  0.48
2012 Sivaramakrishnan S, Ouellet H, Matsumura H, Guan S, Moënne-Loccoz P, Burlingame AL, Ortiz de Montellano PR. Proximal ligand electron donation and reactivity of the cytochrome P450 ferric-peroxo anion. Journal of the American Chemical Society. 134: 6673-84. PMID 22444582 DOI: 10.1021/ja211499q  0.48
2012 Guan S, Price JC, Ghaemmaghami S, Prusiner SB, Burlingame AL. Compartment modeling for mammalian protein turnover studies by stable isotope metabolic labeling. Analytical Chemistry. 84: 4014-21. PMID 22444387 DOI: 10.1021/ac203330z  0.48
2012 Agard NJ, Mahrus S, Trinidad JC, Lynn A, Burlingame AL, Wells JA. Global kinetic analysis of proteolysis via quantitative targeted proteomics. Proceedings of the National Academy of Sciences of the United States of America. 109: 1913-8. PMID 22308409 DOI: 10.1073/pnas.1117158109  0.48
2012 Greninger AL, Knudsen GM, Betegon M, Burlingame AL, Derisi JL. The 3A protein from multiple picornaviruses utilizes the golgi adaptor protein ACBD3 to recruit PI4KIIIβ. Journal of Virology. 86: 3605-16. PMID 22258260 DOI: 10.1128/JVI.06778-11  0.48
2012 Wang Y, Guan S, Acharya P, Liu Y, Thirumaran RK, Brandman R, Schuetz EG, Burlingame AL, Correia MA. Multisite phosphorylation of human liver cytochrome P450 3A4 enhances Its gp78- and CHIP-mediated ubiquitination: a pivotal role of its Ser-478 residue in the gp78-catalyzed reaction. Molecular & Cellular Proteomics : McP. 11: M111.010132. PMID 22101235 DOI: 10.1074/mcp.M111.010132  0.48
2011 Bohlen CJ, Chesler AT, Sharif-Naeini R, Medzihradszky KF, Zhou S, King D, Sánchez EE, Burlingame AL, Basbaum AI, Julius D. A heteromeric Texas coral snake toxin targets acid-sensing ion channels to produce pain. Nature. 479: 410-4. PMID 22094702 DOI: 10.1038/nature10607  0.48
2011 Guan S, Price JC, Prusiner SB, Ghaemmaghami S, Burlingame AL. A data processing pipeline for mammalian proteome dynamics studies using stable isotope metabolic labeling. Molecular & Cellular Proteomics : McP. 10: M111.010728. PMID 21937731 DOI: 10.1074/mcp.M111.010728  0.48
2011 Lau EK, Trester-Zedlitz M, Trinidad JC, Kotowski SJ, Krutchinsky AN, Burlingame AL, von Zastrow M. Quantitative encoding of the effect of a partial agonist on individual opioid receptors by multisite phosphorylation and threshold detection. Science Signaling. 4: ra52. PMID 21868358 DOI: 10.1126/scisignal.2001748  0.48
2011 Charles GM, Chen C, Shih SC, Collins SR, Beltrao P, Zhang X, Sharma T, Tan S, Burlingame AL, Krogan NJ, Madhani HD, Narlikar GJ. Site-specific acetylation mark on an essential chromatin-remodeling complex promotes resistance to replication stress. Proceedings of the National Academy of Sciences of the United States of America. 108: 10620-5. PMID 21673141 DOI: 10.1073/pnas.1019735108  0.48
2011 Myers SA, Panning B, Burlingame AL. Polycomb repressive complex 2 is necessary for the normal site-specific O-GlcNAc distribution in mouse embryonic stem cells. Proceedings of the National Academy of Sciences of the United States of America. 108: 9490-5. PMID 21606357 DOI: 10.1073/pnas.1019289108  0.48
2011 Tang W, Yuan M, Wang R, Yang Y, Wang C, Oses-Prieto JA, Kim TW, Zhou HW, Deng Z, Gampala SS, Gendron JM, Jonassen EM, Lillo C, DeLong A, Burlingame AL, et al. PP2A activates brassinosteroid-responsive gene expression and plant growth by dephosphorylating BZR1. Nature Cell Biology. 13: 124-31. PMID 21258370 DOI: 10.1038/ncb2151  0.48
2011 Chu F, Ren X, Chasse A, Hickman T, Zhang L, Yuh J, Smith MT, Burlingame AL. Quantitative mass spectrometry reveals the epigenome as a target of arsenic. Chemico-Biological Interactions. 192: 113-7. PMID 21075096 DOI: 10.1016/j.cbi.2010.11.003  0.48
2010 David DC, Ollikainen N, Trinidad JC, Cary MP, Burlingame AL, Kenyon C. Widespread protein aggregation as an inherent part of aging in C. elegans. Plos Biology. 8: e1000450. PMID 20711477 DOI: 10.1371/journal.pbio.1000450  0.48
2010 Michaelevski I, Segal-Ruder Y, Rozenbaum M, Medzihradszky KF, Shalem O, Coppola G, Horn-Saban S, Ben-Yaakov K, Dagan SY, Rishal I, Geschwind DH, Pilpel Y, Burlingame AL, Fainzilber M. Signaling to transcription networks in the neuronal retrograde injury response. Science Signaling. 3: ra53. PMID 20628157 DOI: 10.1126/scisignal.2000952  0.48
2010 Wang D, Oses-Prieto JA, Li KH, Fernandes JF, Burlingame AL, Walbot V. The male sterile 8 mutation of maize disrupts the temporal progression of the transcriptome and results in the mis-regulation of metabolic functions. The Plant Journal : For Cell and Molecular Biology. 63: 939-51. PMID 20626649 DOI: 10.1111/j.1365-313X.2010.04294.x  0.48
2010 Ouellet H, Guan S, Johnston JB, Chow ED, Kells PM, Burlingame AL, Cox JS, Podust LM, de Montellano PR. Mycobacterium tuberculosis CYP125A1, a steroid C27 monooxygenase that detoxifies intracellularly generated cholest-4-en-3-one. Molecular Microbiology. 77: 730-42. PMID 20545858 DOI: 10.1111/j.1365-2958.2010.07243.x  0.48
2010 Darula Z, Chalkley RJ, Baker P, Burlingame AL, Medzihradszky KF. Mass spectrometric analysis, automated identification and complete annotation of O-linked glycopeptides. European Journal of Mass Spectrometry (Chichester, England). 16: 421-8. PMID 20530845 DOI: 10.1255/ejms.1028  0.36
2010 Oda Y, Chalkley RJ, Burlingame AL, Bikle DD. The transcriptional coactivator DRIP/mediator complex is involved in vitamin D receptor function and regulates keratinocyte proliferation and differentiation. The Journal of Investigative Dermatology. 130: 2377-88. PMID 20520624 DOI: 10.1038/jid.2010.148  0.36
2010 Hallows KR, Bhalla V, Oyster NM, Wijngaarden MA, Lee JK, Li H, Chandran S, Xia X, Huang Z, Chalkley RJ, Burlingame AL, Pearce D. Phosphopeptide screen uncovers novel phosphorylation sites of Nedd4-2 that potentiate its inhibition of the epithelial Na+ channel. The Journal of Biological Chemistry. 285: 21671-8. PMID 20466724 DOI: 10.1074/jbc.M109.084731  0.48
2010 Burlingame AL, Stults JT. Mass spectrometry and the evolution of proteomics. Molecular & Cellular Proteomics : McP. 9: 753. PMID 20439911 DOI: 10.1074/mcp.I000001-MCP201  0.48
2010 Eliuk SM, Maltby D, Panning B, Burlingame AL. High resolution electron transfer dissociation studies of unfractionated intact histones from murine embryonic stem cells using on-line capillary LC separation: determination of abundant histone isoforms and post-translational modifications. Molecular & Cellular Proteomics : McP. 9: 824-37. PMID 20133344 DOI: 10.1074/mcp.M900569-MCP200  0.48
2010 Ogawa Y, Oses-Prieto J, Kim MY, Horresh I, Peles E, Burlingame AL, Trimmer JS, Meijer D, Rasband MN. ADAM22, a Kv1 channel-interacting protein, recruits membrane-associated guanylate kinases to juxtaparanodes of myelinated axons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 1038-48. PMID 20089912 DOI: 10.1523/JNEUROSCI.4661-09.2010  0.48
2010 Michaelevski I, Medzihradszky KF, Lynn A, Burlingame AL, Fainzilber M. Axonal transport proteomics reveals mobilization of translation machinery to the lesion site in injured sciatic nerve. Molecular & Cellular Proteomics : McP. 9: 976-87. PMID 19955087 DOI: 10.1074/mcp.M900369-MCP200  0.48
2010 Rishal I, Michaelevski I, Rozenbaum M, Shinder V, Medzihradszky KF, Burlingame AL, Fainzilber M. Axoplasm isolation from peripheral nerve. Developmental Neurobiology. 70: 126-33. PMID 19885832 DOI: 10.1002/dneu.20755  0.48
2010 Chu F, Baker PR, Burlingame AL, Chalkley RJ. Finding chimeras: a bioinformatics strategy for identification of cross-linked peptides. Molecular & Cellular Proteomics : McP. 9: 25-31. PMID 19809093 DOI: 10.1074/mcp.M800555-MCP200  0.48
2009 McCord RA, Michishita E, Hong T, Berber E, Boxer LD, Kusumoto R, Guan S, Shi X, Gozani O, Burlingame AL, Bohr VA, Chua KF. SIRT6 stabilizes DNA-dependent protein kinase at chromatin for DNA double-strand break repair. Aging. 1: 109-21. PMID 20157594  0.48
2009 Tomizawa M, Talley TT, Park JF, Maltby D, Medzihradszky KF, Durkin KA, Cornejo-Bravo JM, Burlingame AL, Casida JE, Taylor P. Nicotinic agonist binding site mapped by methionine- and tyrosine-scanning coupled with azidochloropyridinyl photoaffinity labeling. Journal of Medicinal Chemistry. 52: 3735-41. PMID 19459645 DOI: 10.1021/jm900153c  0.48
2009 Fernandez F, Trinidad JC, Blank M, Feng DD, Burlingame AL, Garner CC. Normal protein composition of synapses in Ts65Dn mice: a mouse model of Down syndrome. Journal of Neurochemistry. 110: 157-69. PMID 19453946 DOI: 10.1111/j.1471-4159.2009.06110.x  0.48
2009 Skibbe DS, Fernandes JF, Medzihradszky KF, Burlingame AL, Walbot V. Mutator transposon activity reprograms the transcriptomes and proteomes of developing maize anthers. The Plant Journal : For Cell and Molecular Biology. 59: 622-33. PMID 19453454 DOI: 10.1111/j.1365-313X.2009.03901.x  0.48
2009 Ortiz-Muñoz G, Houard X, Martín-Ventura JL, Ishida BY, Loyau S, Rossignol P, Moreno JA, Kane JP, Chalkley RJ, Burlingame AL, Michel JB, Meilhac O. HDL antielastase activity prevents smooth muscle cell anoikis, a potential new antiatherogenic property. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 23: 3129-39. PMID 19417089 DOI: 10.1096/fj.08-127928  0.36
2009 Coan KE, Maltby DA, Burlingame AL, Shoichet BK. Promiscuous aggregate-based inhibitors promote enzyme unfolding. Journal of Medicinal Chemistry. 52: 2067-75. PMID 19281222 DOI: 10.1021/jm801605r  0.48
2009 Conrad F, Zhu X, Zhang X, Chalkley RJ, Burlingame AL, Marks JD, Liu B. Human antibodies targeting cell surface antigens overexpressed by the hormone refractory metastatic prostate cancer cells: ICAM-1 is a tumor antigen that mediates prostate cancer cell invasion. Journal of Molecular Medicine (Berlin, Germany). 87: 507-14. PMID 19219419 DOI: 10.1007/s00109-009-0446-3  0.48
2008 Li Z, Lee JH, Chu F, Burlingame AL, Günzl A, Wang CC. Identification of a novel chromosomal passenger complex and its unique localization during cytokinesis in Trypanosoma brucei. Plos One. 3: e2354. PMID 18545648 DOI: 10.1371/journal.pone.0002354  0.48
2008 Casati P, Campi M, Chu F, Suzuki N, Maltby D, Guan S, Burlingame AL, Walbot V. Histone acetylation and chromatin remodeling are required for UV-B-dependent transcriptional activation of regulated genes in maize. The Plant Cell. 20: 827-42. PMID 18398050 DOI: 10.1105/tpc.107.056457  0.48
2007 Walther TC, Aguilar PS, Fröhlich F, Chu F, Moreira K, Burlingame AL, Walter P. Pkh-kinases control eisosome assembly and organization. The Embo Journal. 26: 4946-55. PMID 18034155 DOI: 10.1038/sj.emboj.7601933  0.48
2007 Simon MD, Chu F, Racki LR, de la Cruz CC, Burlingame AL, Panning B, Narlikar GJ, Shokat KM. The site-specific installation of methyl-lysine analogs into recombinant histones. Cell. 128: 1003-12. PMID 17350582 DOI: 10.1016/j.cell.2006.12.041  0.48
2006 Chu F, Mahrus S, Craik CS, Burlingame AL. Isotope-coded and affinity-tagged cross-linking (ICATXL): an efficient strategy to probe protein interaction surfaces. Journal of the American Chemical Society. 128: 10362-3. PMID 16895390 DOI: 10.1021/ja0614159  0.48
2006 Chu F, Maynard JC, Chiosis G, Nicchitta CV, Burlingame AL. Identification of novel quaternary domain interactions in the Hsp90 chaperone, GRP94. Protein Science : a Publication of the Protein Society. 15: 1260-9. PMID 16731965 DOI: 10.1110/ps.052065106  0.48
2006 Chu F, Nusinow DA, Chalkley RJ, Plath K, Panning B, Burlingame AL. Mapping post-translational modifications of the histone variant MacroH2A1 using tandem mass spectrometry. Molecular & Cellular Proteomics : McP. 5: 194-203. PMID 16210244 DOI: 10.1074/mcp.M500285-MCP200  0.48
2004 Chu F, Shan SO, Moustakas DT, Alber F, Egea PF, Stroud RM, Walter P, Burlingame AL. Unraveling the interface of signal recognition particle and its receptor by using chemical cross-linking and tandem mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 101: 16454-9. PMID 15546976 DOI: 10.1073/pnas.0407456101  0.48
2002 Zhang K, Tang H, Huang L, Blankenship JW, Jones PR, Xiang F, Yau PM, Burlingame AL. Identification of acetylation and methylation sites of histone H3 from chicken erythrocytes by high-accuracy matrix-assisted laser desorption ionization-time-of-flight, matrix-assisted laser desorption ionization-postsource decay, and nanoelectrospray ionization tandem mass spectrometry. Analytical Biochemistry. 306: 259-69. PMID 12123664 DOI: 10.1006/abio.2002.5719  0.48
1999 Wolfender JL, Chu F, Ball H, Wolfender F, Fainzilber M, Baldwin MA, Burlingame AL. Identification of tyrosine sulfation in Conus pennaceus conotoxins alpha-PnIA and alpha-PnIB: further investigation of labile sulfo- and phosphopeptides by electrospray, matrix-assisted laser desorption/ionization (MALDI) and atmospheric pressure MALDI mass spectrometry. Journal of Mass Spectrometry : Jms. 34: 447-54. PMID 10226369 DOI: 10.1002/(SICI)1096-9888(199904)34:4<447::AID-JMS801>3.0.CO;2-1  0.48
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