Alma L. Burlingame - Publications

Affiliations: 
University of California, San Francisco, San Francisco, CA 
Area:
Mass spectrometry
Website:
http://msf.ucsf.edu/staff/burlingame.html

233 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Wilkins JA, Kaasik K, Chalkley RJ, Burlingame AL. Characterization of Prenylated C-terminal Peptides Using a Thiopropyl-based Capture Technique and LC-MS/MS. Molecular & Cellular Proteomics : McP. PMID 32284353 DOI: 10.1074/mcp.RA120.001944  0.32
2020 Yang Z, Guo G, Yang N, Pun SS, Ho TKL, Ji L, Hu I, Zhang J, Burlingame AL, Li N. The change of gravity vector induces short-term phosphoproteomic alterations in Arabidopsis. Journal of Proteomics. 103720. PMID 32120044 DOI: 10.1016/j.jprot.2020.103720  0.44
2019 Torii T, Ogawa Y, Liu CH, Ho TS, Hamdan H, Wang CC, Oses-Prieto JA, Burlingame AL, Rasband MN. NuMA1 promotes axon initial segment assembly through inhibition of endocytosis. The Journal of Cell Biology. PMID 31727776 DOI: 10.1083/jcb.201907048  0.36
2019 MacRae AJ, Coltri P, Hrabeta-Robinson E, Chalkley RJ, Burlingame AL, Jurica MS. A two-step probing method to compare lysine accessibility across macromolecular complex conformations. Rna Biology. PMID 31213125 DOI: 10.1080/15476286.2019.1632777  0.32
2018 Sahoo PK, Lee SJ, Jaiswal PB, Alber S, Kar AN, Miller-Randolph S, Taylor EE, Smith T, Singh B, Ho TS, Urisman A, Chand S, Pena EA, Burlingame AL, Woolf CJ, et al. Axonal G3BP1 stress granule protein limits axonal mRNA translation and nerve regeneration. Nature Communications. 9: 3358. PMID 30135423 DOI: 10.1038/s41467-018-05647-x  0.32
2018 Rozenbaum M, Rajman M, Rishal I, Koppel I, Koley S, Medzihradszky KF, Oses-Prieto JA, Kawaguchi R, Amieux PS, Burlingame AL, Coppola G, Fainzilber M. Translatome Regulation in Neuronal Injury and Axon Regrowth. Eneuro. 5. PMID 29756027 DOI: 10.1523/ENEURO.0276-17.2018  0.32
2018 Terenzio M, Koley S, Samra N, Rishal I, Zhao Q, Sahoo PK, Urisman A, Marvaldi L, Oses-Prieto JA, Forester C, Gomes C, Kalinski AL, Di Pizio A, Doron-Mandel E, Perry RB, ... ... Burlingame AL, et al. Locally translated mTOR controls axonal local translation in nerve injury. Science (New York, N.Y.). 359: 1416-1421. PMID 29567716 DOI: 10.1126/science.aan1053  0.32
2018 MacRae AJ, Mayerle M, Hrabeta-Robinson E, Chalkley RJ, Guthrie C, Burlingame AL, Jurica M. Prp8 positioning of U5 snRNA is linked to 5' splice site recognition. Rna (New York, N.Y.). PMID 29487104 DOI: 10.1261/rna.065458.117  0.32
2018 Forester CM, Zhao Q, Phillips NJ, Urisman A, Chalkley RJ, Oses-Prieto JA, Zhang L, Ruggero D, Burlingame AL. Revealing nascent proteomics in signaling pathways and cell differentiation. Proceedings of the National Academy of Sciences of the United States of America. PMID 29467287 DOI: 10.1073/pnas.1707514115  0.32
2017 Huang CY, Zhang C, Ho TS, Oses-Prieto J, Burlingame AL, Lalonde J, Noebels JL, Leterrier C, Rasband MN. αII spectrin forms a periodic cytoskeleton at the axon initial segment and is required for nervous system function. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 29038240 DOI: 10.1523/JNEUROSCI.2112-17.2017  0.32
2017 Leon J, Moreno AJ, Garay BI, Chalkley RJ, Burlingame AL, Wang D, Dubal DB. Peripheral Elevation of a Klotho Fragment Enhances Brain Function and Resilience in Young, Aging, and α-Synuclein Transgenic Mice. Cell Reports. 20: 1360-1371. PMID 28793260 DOI: 10.1016/j.celrep.2017.07.024  0.32
2017 Ni W, Xu SL, González-Grandío E, Chalkley RJ, Huhmer AFR, Burlingame AL, Wang ZY, Quail PH. PPKs mediate direct signal transfer from phytochrome photoreceptors to transcription factor PIF3. Nature Communications. 8: 15236. PMID 28492231 DOI: 10.1038/ncomms15236  0.32
2017 Xu SL, Chalkley RJ, Maynard JC, Wang W, Ni W, Jiang X, Shin K, Cheng L, Savage D, Hühmer AF, Burlingame AL, Wang ZY. Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. PMID 28154133 DOI: 10.1073/pnas.1610452114  0.32
2016 Robinson PJ, Trnka MJ, Bushnell DA, Davis RE, Mattei PJ, Burlingame AL, Kornberg RD. Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex. Cell. 166: 1411-1422.e16. PMID 27610567 DOI: 10.1016/j.cell.2016.08.050  0.56
2016 Wei CQ, Chien CW, Ai LF, Zhao J, Zhang Z, Li KH, Burlingame AL, Sun Y, Wang ZY. The Arabidopsis B-BOX protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 27523280 DOI: 10.1016/j.jgg.2016.05.007  0.56
2016 Perry RB, Rishal I, Doron-Mandel E, Kalinski AL, Medzihradszky KF, Terenzio M, Alber S, Koley S, Lin A, Rozenbaum M, Yudin D, Sahoo PK, Gomes C, Shinder V, Geraisy W, ... ... Burlingame AL, et al. Nucleolin-Mediated RNA Localization Regulates Neuron Growth and Cycling Cell Size. Cell Reports. PMID 27477284 DOI: 10.1016/j.celrep.2016.07.005  0.32
2016 To TL, Medzihradszky KF, Burlingame AL, DeGrado WF, Jo H, Shu X. Photoactivatable protein labeling by singlet oxygen mediated reactions. Bioorganic & Medicinal Chemistry Letters. PMID 27220724 DOI: 10.1016/j.bmcl.2016.05.034  0.56
2016 Lewis BA, Burlingame AL, Myers SA. Human RNA polymerase II promoter recruitment in vitro is regulated by OGT. The Journal of Biological Chemistry. PMID 27129214 DOI: 10.1074/jbc.M115.684365  0.56
2016 Xu SL, Medzihradszky KF, Wang ZY, Burlingame AL, Chalkley RJ. N-Glycopeptide Profiling in Arabidopsis Inflorescence. Molecular & Cellular Proteomics : McP. PMID 27067053 DOI: 10.1074/mcp.M115.056101  0.32
2016 Myers SA, Peddada S, Chatterjee N, Freidreich T, Tomoda K, Krings G, Thomas S, Broeker M, Maynard J, Thomson M, Pollard K, Yamanaka S, Burlingame AL, Panning B. SOX2 O-GlcNAcylation alters its protein-protein interactions and genomic occupancy to modulate gene expression in pluripotent cells. Elife. 5. PMID 26949256 DOI: 10.7554/eLife.10647  0.56
2016 Doron-Mandel E, Alber S, Oses JA, Medzihradszky KF, Burlingame AL, Fainzilber M, Twiss JL, Lee SJ. Isolation and analyses of axonal ribonucleoprotein complexes. Methods in Cell Biology. 131: 467-86. PMID 26794529 DOI: 10.1016/bs.mcb.2015.06.010  0.56
2015 Roh SH, Kasembeli M, Galaz-Montoya JG, Trnka M, Lau WC, Burlingame A, Chiu W, Tweardy DJ. Chaperonin TRiC/CCT Modulates the Folding and Activity of Leukemogenic Fusion Oncoprotein AML1-ETO. The Journal of Biological Chemistry. PMID 26706127 DOI: 10.1074/jbc.M115.684878  0.56
2015 Zhang B, Wang X, Zhao Z, Wang R, Huang X, Zhu Y, Yuan L, Wang Y, Xu X, Burlingame AL, Gao Y, Sun Y, Tang W. OsBRI1 activates BR signaling by preventing binding between the TPR and kinase domains of OsBSK3 via phosphorylation. Plant Physiology. PMID 26697897 DOI: 10.1104/pp.15.01668  0.56
2015 Rys JP, DuFort CC, Monteiro DA, Baird MA, Oses-Prieto JA, Chand S, Burlingame AL, Davidson MW, Alliston TN. Discrete spatial organization of TGFβ receptors couples receptor multimerization and signaling to cellular tension. Elife. 4. PMID 26652004 DOI: 10.7554/eLife.09300  0.56
2015 Wang R, Liu M, Yuan M, Oses-Prieto JA, Cai X, Sun Y, Burlingame AL, Wang ZY, Tang W. The brassinosteroid-activated BRI1 receptor kinase is switched off by dephosphorylation mediated by cytoplasm-localized PP2A B' subunits. Molecular Plant. PMID 26517938 DOI: 10.1016/j.molp.2015.10.007  0.56
2015 Didonna A, Isobe N, Caillier SJ, Li KH, Burlingame AL, Hauser SL, Baranzini SE, Patsopoulos NA, Oksenberg JR. A non-synonymous single-nucleotide polymorphism associated with multiple sclerosis risk affects the EVI5 interactome. Human Molecular Genetics. PMID 26433934 DOI: 10.1093/hmg/ddv412  0.56
2015 Kim EJ, Youn JH, Park CH, Kim TW, Guan S, Xu S, Burlingame AL, Kim YP, Kim SK, Wang ZY, Kim TW. Oligomerization between BSU1 Family Members Potentiates Brassinosteroid Signaling in Arabidopsis. Molecular Plant. PMID 26432287 DOI: 10.1016/j.molp.2015.09.012  0.56
2015 Robinson PJ, Trnka MJ, Pellarin R, Greenberg CH, Bushnell DA, Davis R, Burlingame AL, Sali A, Kornberg RD. Molecular architecture of the yeast Mediator complex. Elife. 4. PMID 26402457 DOI: 10.7554/eLife.08719  0.56
2015 Lu J, Trnka MJ, Roh SH, Robinson PJ, Shiau C, Fujimori DG, Chiu W, Burlingame AL, Guan S. Improved Peak Detection and Deconvolution of Native Electrospray Mass Spectra from Large Protein Complexes. Journal of the American Society For Mass Spectrometry. PMID 26323614 DOI: 10.1007/s13361-015-1235-6  0.56
2015 Guan S, Trnka MJ, Bushnell DA, Robinson PJ, Gestwicki JE, Burlingame AL. Deconvolution method for specific and nonspecific binding of ligand to multiprotein complex by native mass spectrometry. Analytical Chemistry. 87: 8541-6. PMID 26189511 DOI: 10.1021/acs.analchem.5b02258  0.56
2015 Bradshaw RA, Burlingame AL. Minireviews revisited Molecular and Cellular Proteomics. 14: 455. DOI: 10.1074/mcp.E115.048868  0.56
2015 Morris M, Knudsen GM, Maeda S, Trinidad JC, Ioanoviciu A, Burlingame AL, Mucke L. Tau post-translational modifications in wild-type and human amyloid precursor protein transgenic mice Nature Neuroscience. 18: 1183-1189. DOI: 10.1038/nn.4067  0.56
2015 Bradshaw RA, Pundavela J, Biarc J, Chalkley RJ, Burlingame AL, Hondermarck H. NGF and ProNGF: Regulation of neuronal and neoplastic responses through receptor signaling Advances in Biological Regulation. 58: 16-27. DOI: 10.1016/j.jbior.2014.11.003  0.56
2014 Cho Y, Di Liberto V, Carlin D, Abe N, Li KH, Burlingame AL, Guan S, Michaelevski I, Cavalli V. Syntaxin13 expression is regulated by mammalian target of rapamycin (mTOR) in injured neurons to promote axon regeneration. The Journal of Biological Chemistry. 289: 15820-32. PMID 24737317 DOI: 10.1074/jbc.M113.536607  0.56
2014 Deng Z, Oses-Prieto JA, Kutschera U, Tseng TS, Hao L, Burlingame AL, Wang ZY, Briggs WR. Blue light-induced proteomic changes in etiolated Arabidopsis seedlings. Journal of Proteome Research. 13: 2524-33. PMID 24712693 DOI: 10.1021/pr500010z  0.56
2014 Hirsch J, Chalkley RJ, Bentley T, Burlingame AL, Frank JA. Double impact of cigarette smoke and mechanical ventilation on the alveolar epithelial type II cell. Critical Care (London, England). 18: R50. PMID 24666941 DOI: 10.1186/cc13795  0.56
2014 Carr SA, Abbatiello SE, Ackermann BL, Borchers C, Domon B, Deutsch EW, Grant RP, Hoofnagle AN, Hüttenhain R, Koomen JM, Liebler DC, Liu T, MacLean B, Mani DR, Mansfield E, ... ... Burlingame AL, et al. Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach. Molecular & Cellular Proteomics : McP. 13: 907-17. PMID 24443746 DOI: 10.1074/mcp.M113.036095  0.56
2014 Trnka MJ, Baker PR, Robinson PJ, Burlingame AL, Chalkley RJ. Matching cross-linked peptide spectra: only as good as the worse identification. Molecular & Cellular Proteomics : McP. 13: 420-34. PMID 24335475 DOI: 10.1074/mcp.M113.034009  0.32
2013 Wiita AP, Ziv E, Wiita PJ, Urisman A, Julien O, Burlingame AL, Weissman JS, Wells JA. Global cellular response to chemotherapy-induced apoptosis. Elife. 2: e01236. PMID 24171104 DOI: 10.7554/eLife.01236  0.56
2013 Ni W, Xu SL, Chalkley RJ, Pham TN, Guan S, Maltby DA, Burlingame AL, Wang ZY, Quail PH. Multisite light-induced phosphorylation of the transcription factor PIF3 is necessary for both its rapid degradation and concomitant negative feedback modulation of photoreceptor phyB levels in Arabidopsis. The Plant Cell. 25: 2679-98. PMID 23903316 DOI: 10.1105/tpc.113.112342  0.32
2013 Nishino M, Choy JW, Gushwa NN, Oses-Prieto JA, Koupparis K, Burlingame AL, Renslo AR, McKerrow JH, Taunton J. Hypothemicin, a fungal natural product, identifies therapeutic targets in Trypanosoma brucei Elife. 2013. PMID 23853713 DOI: 10.7554/eLife.00712  0.56
2013 Aebersold R, Burlingame AL, Bradshaw RA. Western blots versus selected reaction monitoring assays: time to turn the tables? Molecular & Cellular Proteomics : McP. 12: 2381-2. PMID 23756428 DOI: 10.1074/mcp.E113.031658  0.56
2013 Xu J, Wang AH, Oses-Prieto J, Makhijani K, Katsuno Y, Pei M, Yan L, Zheng YG, Burlingame A, Brückner K, Derynck R. Arginine Methylation Initiates BMP-Induced Smad Signaling. Molecular Cell. 51: 5-19. PMID 23747011 DOI: 10.1016/j.molcel.2013.05.004  0.56
2013 Susuki K, Chang KJ, Zollinger DR, Liu Y, Ogawa Y, Eshed-Eisenbach Y, Dours-Zimmermann MT, Oses-Prieto JA, Burlingame AL, Seidenbecher CI, Zimmermann DR, Oohashi T, Peles E, Rasband MN. Three mechanisms assemble central nervous system nodes of Ranvier. Neuron. 78: 469-82. PMID 23664614 DOI: 10.1016/j.neuron.2013.03.005  0.56
2013 Gautam V, Trinidad JC, Rimerman RA, Costa BM, Burlingame AL, Monaghan DT. Nedd4 is a specific E3 ubiquitin ligase for the NMDA receptor subunit GluN2D. Neuropharmacology. 74: 96-107. PMID 23639431 DOI: 10.1016/j.neuropharm.2013.04.035  0.56
2013 Shiau C, Trnka MJ, Bozicevic A, Ortiz Torres I, Al-Sady B, Burlingame AL, Narlikar GJ, Fujimori DG. Reconstitution of nucleosome demethylation and catalytic properties of a Jumonji histone demethylase. Chemistry & Biology. 20: 494-9. PMID 23601638 DOI: 10.1016/j.chembiol.2013.03.008  0.56
2013 Biarc J, Chalkley RJ, Burlingame AL, Bradshaw RA. Dissecting the roles of tyrosines 490 and 785 of TrkA protein in the induction of downstream protein phosphorylation using chimeric receptors Journal of Biological Chemistry. 288: 16606-16618. PMID 23589303 DOI: 10.1074/jbc.M113.475285  0.56
2013 Greninger AL, Knudsen GM, Betegon M, Burlingame AL, DeRisi JL. ACBD3 interaction with TBC1 domain 22 protein is differentially affected by enteroviral and kobuviral 3A protein binding. Mbio. 4: e00098-13. PMID 23572552 DOI: 10.1128/mBio.00098-13  0.56
2013 Bessat M, Knudsen G, Burlingame AL, Wang CC. A minimal anaphase promoting complex/cyclosome (APC/C) in Trypanosoma brucei. Plos One. 8: e59258. PMID 23533609 DOI: 10.1371/journal.pone.0059258  0.36
2013 Liu W, Baker SS, Trinidad J, Burlingame AL, Baker RD, Forte JG, Virtuoso LP, Egilmez NK, Zhu L. Inhibition of lysosomal enzyme activities by proton pump inhibitors. Journal of Gastroenterology. 48: 1343-52. PMID 23478938 DOI: 10.1007/s00535-013-0774-5  0.56
2013 Choy JW, Bryant C, Calvet CM, Doyle PS, Gunatilleke SS, Leung SS, Ang KK, Chen S, Gut J, Oses-Prieto JA, Johnston JB, Arkin MR, Burlingame AL, Taunton J, Jacobson MP, et al. Chemical-biological characterization of a cruzain inhibitor reveals a second target and a mammalian off-target. Beilstein Journal of Organic Chemistry. 9: 15-25. PMID 23400640 DOI: 10.3762/bjoc.9.3  0.56
2013 Le DD, Cortesi AT, Myers SA, Burlingame AL, Fujimori DG. Site-specific and regiospecific installation of methylarginine analogues into recombinant histones and insights into effector protein binding. Journal of the American Chemical Society. 135: 2879-82. PMID 23398247 DOI: 10.1021/ja3108214  0.56
2013 Kaasik K, Kivimäe S, Allen JJ, Chalkley RJ, Huang Y, Baer K, Kissel H, Burlingame AL, Shokat KM, Ptáček LJ, Fu YH. Glucose sensor O-GlcNAcylation coordinates with phosphorylation to regulate circadian clock. Cell Metabolism. 17: 291-302. PMID 23395175 DOI: 10.1016/j.cmet.2012.12.017  0.32
2013 Ilagan JO, Chalkley RJ, Burlingame AL, Jurica MS. Rearrangements within human spliceosomes captured after exon ligation. Rna (New York, N.Y.). 19: 400-12. PMID 23345524 DOI: 10.1261/rna.034223.112  0.32
2013 Bradshaw RA, Chalkley RJ, Biarc J, Burlingame AL. Receptor tyrosine kinase signaling mechanisms: Devolving TrkA responses with phosphoproteomics Advances in Biological Regulation. 53: 87-96. PMID 23266087 DOI: 10.1016/j.jbior.2012.10.006  0.56
2013 Just S, Illing S, Trester-Zedlitz M, Lau EK, Kotowski SJ, Miess E, Mann A, Doll C, Trinidad JC, Burlingame AL, von Zastrow M, Schulz S. Differentiation of opioid drug effects by hierarchical multi-site phosphorylation. Molecular Pharmacology. 83: 633-9. PMID 23239825 DOI: 10.1124/mol.112.082875  0.56
2013 Zhuang M, Guan S, Wang H, Burlingame AL, Wells JA. Substrates of IAP ubiquitin ligases identified with a designed orthogonal E3 ligase, the NEDDylator. Molecular Cell. 49: 273-82. PMID 23201124 DOI: 10.1016/j.molcel.2012.10.022  0.56
2013 Trinidad JC, Thalhammer A, Burlingame AL, Schoepfer R. Activity-dependent protein dynamics define interconnected cores of co-regulated postsynaptic proteins. Molecular & Cellular Proteomics : McP. 12: 29-41. PMID 23035237 DOI: 10.1074/mcp.M112.019976  0.56
2012 Robinson PJ, Bushnell DA, Trnka MJ, Burlingame AL, Kornberg RD. Structure of the mediator head module bound to the carboxy-terminal domain of RNA polymerase II. Proceedings of the National Academy of Sciences of the United States of America. 109: 17931-5. PMID 23071300 DOI: 10.1073/pnas.1215241109  0.56
2012 O'Donoghue AJ, Eroy-Reveles AA, Knudsen GM, Ingram J, Zhou M, Statnekov JB, Greninger AL, Hostetter DR, Qu G, Maltby DA, Anderson MO, Derisi JL, McKerrow JH, Burlingame AL, Craik CS. Global identification of peptidase specificity by multiplex substrate profiling. Nature Methods. 9: 1095-100. PMID 23023596 DOI: 10.1038/nmeth.2182  0.56
2012 Crawford ED, Seaman JE, Barber AE, David DC, Babbitt PC, Burlingame AL, Wells JA. Conservation of caspase substrates across metazoans suggests hierarchical importance of signaling pathways over specific targets and cleavage site motifs in apoptosis. Cell Death and Differentiation. 19: 2040-8. PMID 22918439 DOI: 10.1038/cdd.2012.99  0.56
2012 Shimbo K, Hsu GW, Nguyen H, Mahrus S, Trinidad JC, Burlingame AL, Wells JA. Quantitative profiling of caspase-cleaved substrates reveals different drug-induced and cell-type patterns in apoptosis. Proceedings of the National Academy of Sciences of the United States of America. 109: 12432-7. PMID 22802652 DOI: 10.1073/pnas.1208616109  0.56
2012 Trinidad JC, Barkan DT, Gulledge BF, Thalhammer A, Sali A, Schoepfer R, Burlingame AL. Global identification and characterization of both O-GlcNAcylation and phosphorylation at the murine synapse. Molecular & Cellular Proteomics : McP. 11: 215-29. PMID 22645316 DOI: 10.1074/mcp.O112.018366  0.56
2012 Xu SL, Chalkley RJ, Wang ZY, Burlingame AL. Identification of O-linked β-D-N-acetylglucosamine-modified proteins from Arabidopsis. Methods in Molecular Biology (Clifton, N.J.). 876: 33-45. PMID 22576084 DOI: 10.1007/978-1-61779-809-2_3  0.32
2012 Burlingame AL, Stults JT. Mass spectrometry: reconnaissance at the Frontiers of biology. Molecular & Cellular Proteomics : McP. 11: 1-2. PMID 22511459 DOI: 10.1074/mcp.E112.019653  0.56
2012 Sivaramakrishnan S, Ouellet H, Matsumura H, Guan S, Moënne-Loccoz P, Burlingame AL, Ortiz de Montellano PR. Proximal ligand electron donation and reactivity of the cytochrome P450 ferric-peroxo anion. Journal of the American Chemical Society. 134: 6673-84. PMID 22444582 DOI: 10.1021/ja211499q  0.56
2012 Guan S, Price JC, Ghaemmaghami S, Prusiner SB, Burlingame AL. Compartment modeling for mammalian protein turnover studies by stable isotope metabolic labeling. Analytical Chemistry. 84: 4014-21. PMID 22444387 DOI: 10.1021/ac203330z  0.56
2012 Agard NJ, Mahrus S, Trinidad JC, Lynn A, Burlingame AL, Wells JA. Global kinetic analysis of proteolysis via quantitative targeted proteomics. Proceedings of the National Academy of Sciences of the United States of America. 109: 1913-8. PMID 22308409 DOI: 10.1073/pnas.1117158109  0.56
2012 Hengeveld RC, Hertz NT, Vromans MJ, Zhang C, Burlingame AL, Shokat KM, Lens SM. Development of a chemical genetic approach for human aurora B kinase identifies novel substrates of the chromosomal passenger complex. Molecular & Cellular Proteomics : McP. 11: 47-59. PMID 22267324 DOI: 10.1074/mcp.M111.013912  0.32
2012 Greninger AL, Knudsen GM, Betegon M, Burlingame AL, Derisi JL. The 3A protein from multiple picornaviruses utilizes the golgi adaptor protein ACBD3 to recruit PI4KIIIβ. Journal of Virology. 86: 3605-16. PMID 22258260 DOI: 10.1128/JVI.06778-11  0.56
2012 Wang Y, Guan S, Acharya P, Liu Y, Thirumaran RK, Brandman R, Schuetz EG, Burlingame AL, Correia MA. Multisite phosphorylation of human liver cytochrome P450 3A4 enhances Its gp78- and CHIP-mediated ubiquitination: a pivotal role of its Ser-478 residue in the gp78-catalyzed reaction. Molecular & Cellular Proteomics : McP. 11: M111.010132. PMID 22101235 DOI: 10.1074/mcp.M111.010132  0.56
2012 Biarc J, Chalkley RJ, Burlingame AL, Bradshaw RA. The induction of serine/threonine protein phosphorylations by a PDGFR/TrkA chimera in stably transfected PC12 cells Molecular and Cellular Proteomics. 11: 15-30. PMID 22027198 DOI: 10.1074/mcp.M111.013375  0.56
2011 Bohlen CJ, Chesler AT, Sharif-Naeini R, Medzihradszky KF, Zhou S, King D, Sánchez EE, Burlingame AL, Basbaum AI, Julius D. A heteromeric Texas coral snake toxin targets acid-sensing ion channels to produce pain. Nature. 479: 410-4. PMID 22094702 DOI: 10.1038/nature10607  0.56
2011 Guan S, Price JC, Prusiner SB, Ghaemmaghami S, Burlingame AL. A data processing pipeline for mammalian proteome dynamics studies using stable isotope metabolic labeling. Molecular & Cellular Proteomics : McP. 10: M111.010728. PMID 21937731 DOI: 10.1074/mcp.M111.010728  0.56
2011 Lau EK, Trester-Zedlitz M, Trinidad JC, Kotowski SJ, Krutchinsky AN, Burlingame AL, von Zastrow M. Quantitative encoding of the effect of a partial agonist on individual opioid receptors by multisite phosphorylation and threshold detection. Science Signaling. 4: ra52. PMID 21868358 DOI: 10.1126/scisignal.2001748  0.56
2011 Ge W, Song Y, Zhang C, Zhang Y, Burlingame AL, Guo Y. Proteomic analyses of apoplastic proteins from germinating Arabidopsis thaliana pollen. Biochimica Et Biophysica Acta. 1814: 1964-73. PMID 21798377 DOI: 10.1016/j.bbapap.2011.07.013  0.32
2011 Charles GM, Chen C, Shih SC, Collins SR, Beltrao P, Zhang X, Sharma T, Tan S, Burlingame AL, Krogan NJ, Madhani HD, Narlikar GJ. Site-specific acetylation mark on an essential chromatin-remodeling complex promotes resistance to replication stress. Proceedings of the National Academy of Sciences of the United States of America. 108: 10620-5. PMID 21673141 DOI: 10.1073/pnas.1019735108  0.56
2011 Myers SA, Panning B, Burlingame AL. Polycomb repressive complex 2 is necessary for the normal site-specific O-GlcNAc distribution in mouse embryonic stem cells. Proceedings of the National Academy of Sciences of the United States of America. 108: 9490-5. PMID 21606357 DOI: 10.1073/pnas.1019289108  0.56
2011 Coltri P, Effenberger K, Chalkley RJ, Burlingame AL, Jurica MS. Breaking up the C complex spliceosome shows stable association of proteins with the lariat intron intermediate. Plos One. 6: e19061. PMID 21526149 DOI: 10.1371/journal.pone.0019061  0.32
2011 Song Y, Zhang C, Ge W, Zhang Y, Burlingame AL, Guo Y. Identification of NaCl stress-responsive apoplastic proteins in rice shoot stems by 2D-DIGE. Journal of Proteomics. 74: 1045-67. PMID 21420516 DOI: 10.1016/j.jprot.2011.03.009  0.32
2011 Sterling HJ, Cassou CA, Trnka MJ, Burlingame AL, Krantz BA, Williams ER. The role of conformational flexibility on protein supercharging in native electrospray ionization. Physical Chemistry Chemical Physics : Pccp. 13: 18288-96. PMID 21399817 DOI: 10.1039/c1cp20277d  0.56
2011 Tang W, Yuan M, Wang R, Yang Y, Wang C, Oses-Prieto JA, Kim TW, Zhou HW, Deng Z, Gampala SS, Gendron JM, Jonassen EM, Lillo C, DeLong A, Burlingame AL, et al. PP2A activates brassinosteroid-responsive gene expression and plant growth by dephosphorylating BZR1. Nature Cell Biology. 13: 124-31. PMID 21258370 DOI: 10.1038/ncb2151  0.56
2011 Chu F, Ren X, Chasse A, Hickman T, Zhang L, Yuh J, Smith MT, Burlingame AL. Quantitative mass spectrometry reveals the epigenome as a target of arsenic. Chemico-Biological Interactions. 192: 113-7. PMID 21075096 DOI: 10.1016/j.cbi.2010.11.003  0.56
2011 Biarc J, Chalkley RJ, Burlingame AL, Bradshaw RA. Receptor tyrosine kinase signaling - a proteomic perspective Advances in Enzyme Regulation. 51: 293-305. PMID 21056590 DOI: 10.1016/j.advenzreg.2010.10.005  0.56
2010 Hertz NT, Wang BT, Allen JJ, Zhang C, Dar AC, Burlingame AL, Shokat KM. Chemical genetic approach for kinase-substrate mapping by covalent capture of thiophosphopeptides and analysis by mass spectrometry. Current Protocols in Chemical Biology. 2: 15-36. PMID 23836541 DOI: 10.1002/9780470559277.ch090201  0.32
2010 Bradshaw RA, Burlingame AL. Technological innovation revisited Molecular and Cellular Proteomics. 9: 2335-2336. PMID 20943599 DOI: 10.1074/mcp.E110.005447  0.56
2010 David DC, Ollikainen N, Trinidad JC, Cary MP, Burlingame AL, Kenyon C. Widespread protein aggregation as an inherent part of aging in C. elegans. Plos Biology. 8: e1000450. PMID 20711477 DOI: 10.1371/journal.pbio.1000450  0.56
2010 Price JC, Guan S, Burlingame A, Prusiner SB, Ghaemmaghami S. Analysis of proteome dynamics in the mouse brain. Proceedings of the National Academy of Sciences of the United States of America. 107: 14508-13. PMID 20699386 DOI: 10.1073/pnas.1006551107  0.56
2010 Michaelevski I, Segal-Ruder Y, Rozenbaum M, Medzihradszky KF, Shalem O, Coppola G, Horn-Saban S, Ben-Yaakov K, Dagan SY, Rishal I, Geschwind DH, Pilpel Y, Burlingame AL, Fainzilber M. Signaling to transcription networks in the neuronal retrograde injury response. Science Signaling. 3: ra53. PMID 20628157 DOI: 10.1126/scisignal.2000952  0.56
2010 Wang D, Oses-Prieto JA, Li KH, Fernandes JF, Burlingame AL, Walbot V. The male sterile 8 mutation of maize disrupts the temporal progression of the transcriptome and results in the mis-regulation of metabolic functions. The Plant Journal : For Cell and Molecular Biology. 63: 939-51. PMID 20626649 DOI: 10.1111/j.1365-313X.2010.04294.x  0.56
2010 Ouellet H, Guan S, Johnston JB, Chow ED, Kells PM, Burlingame AL, Cox JS, Podust LM, de Montellano PR. Mycobacterium tuberculosis CYP125A1, a steroid C27 monooxygenase that detoxifies intracellularly generated cholest-4-en-3-one. Molecular Microbiology. 77: 730-42. PMID 20545858 DOI: 10.1111/j.1365-2958.2010.07243.x  0.56
2010 Darula Z, Chalkley RJ, Baker P, Burlingame AL, Medzihradszky KF. Mass spectrometric analysis, automated identification and complete annotation of O-linked glycopeptides. European Journal of Mass Spectrometry (Chichester, England). 16: 421-8. PMID 20530845 DOI: 10.1255/ejms.1028  0.32
2010 Oda Y, Chalkley RJ, Burlingame AL, Bikle DD. The transcriptional coactivator DRIP/mediator complex is involved in vitamin D receptor function and regulates keratinocyte proliferation and differentiation. The Journal of Investigative Dermatology. 130: 2377-88. PMID 20520624 DOI: 10.1038/jid.2010.148  0.32
2010 Hallows KR, Bhalla V, Oyster NM, Wijngaarden MA, Lee JK, Li H, Chandran S, Xia X, Huang Z, Chalkley RJ, Burlingame AL, Pearce D. Phosphopeptide screen uncovers novel phosphorylation sites of Nedd4-2 that potentiate its inhibition of the epithelial Na+ channel. The Journal of Biological Chemistry. 285: 21671-8. PMID 20466724 DOI: 10.1074/jbc.M109.084731  0.56
2010 Burlingame AL, Stults JT. Mass spectrometry and the evolution of proteomics. Molecular & Cellular Proteomics : McP. 9: 753. PMID 20439911 DOI: 10.1074/mcp.I000001-MCP201  0.56
2010 Eliuk SM, Maltby D, Panning B, Burlingame AL. High resolution electron transfer dissociation studies of unfractionated intact histones from murine embryonic stem cells using on-line capillary LC separation: determination of abundant histone isoforms and post-translational modifications. Molecular & Cellular Proteomics : McP. 9: 824-37. PMID 20133344 DOI: 10.1074/mcp.M900569-MCP200  0.56
2010 Ogawa Y, Oses-Prieto J, Kim MY, Horresh I, Peles E, Burlingame AL, Trimmer JS, Meijer D, Rasband MN. ADAM22, a Kv1 channel-interacting protein, recruits membrane-associated guanylate kinases to juxtaparanodes of myelinated axons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 1038-48. PMID 20089912 DOI: 10.1523/JNEUROSCI.4661-09.2010  0.56
2010 Chalkley RJ, Medzihradszky KF, Lynn AJ, Baker PR, Burlingame AL. Statistical analysis of Peptide electron transfer dissociation fragmentation mass spectrometry. Analytical Chemistry. 82: 579-84. PMID 20028093 DOI: 10.1021/ac9018582  0.32
2010 Michaelevski I, Medzihradszky KF, Lynn A, Burlingame AL, Fainzilber M. Axonal transport proteomics reveals mobilization of translation machinery to the lesion site in injured sciatic nerve. Molecular & Cellular Proteomics : McP. 9: 976-87. PMID 19955087 DOI: 10.1074/mcp.M900369-MCP200  0.56
2010 Rishal I, Michaelevski I, Rozenbaum M, Shinder V, Medzihradszky KF, Burlingame AL, Fainzilber M. Axoplasm isolation from peripheral nerve. Developmental Neurobiology. 70: 126-33. PMID 19885832 DOI: 10.1002/dneu.20755  0.56
2010 Chu F, Baker PR, Burlingame AL, Chalkley RJ. Finding chimeras: a bioinformatics strategy for identification of cross-linked peptides. Molecular & Cellular Proteomics : McP. 9: 25-31. PMID 19809093 DOI: 10.1074/mcp.M800555-MCP200  0.4
2009 McCord RA, Michishita E, Hong T, Berber E, Boxer LD, Kusumoto R, Guan S, Shi X, Gozani O, Burlingame AL, Bohr VA, Chua KF. SIRT6 stabilizes DNA-dependent protein kinase at chromatin for DNA double-strand break repair. Aging. 1: 109-21. PMID 20157594  0.56
2009 Ilagan J, Yuh P, Chalkley RJ, Burlingame AL, Jurica MS. The role of exon sequences in C complex spliceosome structure. Journal of Molecular Biology. 394: 363-75. PMID 19761775 DOI: 10.1016/j.jmb.2009.09.019  0.32
2009 Kim TW, Guan S, Sun Y, Deng Z, Tang W, Shang JX, Sun Y, Burlingame AL, Wang ZY. Brassinosteroid signal transduction from cell-surface receptor kinases to nuclear transcription factors. Nature Cell Biology. 11: 1254-60. PMID 19734888 DOI: 10.1038/ncb1970  0.36
2009 Jo WJ, Ren X, Chu F, Aleshin M, Wintz H, Burlingame A, Smith MT, Vulpe CD, Zhang L. Acetylated H4K16 by MYST1 protects UROtsa cells from arsenic toxicity and is decreased following chronic arsenic exposure. Toxicology and Applied Pharmacology. 241: 294-302. PMID 19732783 DOI: 10.1016/j.taap.2009.08.027  0.4
2009 Tomizawa M, Talley TT, Park JF, Maltby D, Medzihradszky KF, Durkin KA, Cornejo-Bravo JM, Burlingame AL, Casida JE, Taylor P. Nicotinic agonist binding site mapped by methionine- and tyrosine-scanning coupled with azidochloropyridinyl photoaffinity labeling. Journal of Medicinal Chemistry. 52: 3735-41. PMID 19459645 DOI: 10.1021/jm900153c  0.56
2009 Chalkley RJ, Thalhammer A, Schoepfer R, Burlingame AL. Identification of protein O-GlcNAcylation sites using electron transfer dissociation mass spectrometry on native peptides. Proceedings of the National Academy of Sciences of the United States of America. 106: 8894-9. PMID 19458039 DOI: 10.1073/pnas.0900288106  0.56
2009 Fernandez F, Trinidad JC, Blank M, Feng DD, Burlingame AL, Garner CC. Normal protein composition of synapses in Ts65Dn mice: a mouse model of Down syndrome. Journal of Neurochemistry. 110: 157-69. PMID 19453946 DOI: 10.1111/j.1471-4159.2009.06110.x  0.56
2009 Skibbe DS, Fernandes JF, Medzihradszky KF, Burlingame AL, Walbot V. Mutator transposon activity reprograms the transcriptomes and proteomes of developing maize anthers. The Plant Journal : For Cell and Molecular Biology. 59: 622-33. PMID 19453454 DOI: 10.1111/j.1365-313X.2009.03901.x  0.56
2009 Ortiz-Muñoz G, Houard X, Martín-Ventura JL, Ishida BY, Loyau S, Rossignol P, Moreno JA, Kane JP, Chalkley RJ, Burlingame AL, Michel JB, Meilhac O. HDL antielastase activity prevents smooth muscle cell anoikis, a potential new antiatherogenic property. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 23: 3129-39. PMID 19417089 DOI: 10.1096/fj.08-127928  0.32
2009 Coan KE, Maltby DA, Burlingame AL, Shoichet BK. Promiscuous aggregate-based inhibitors promote enzyme unfolding. Journal of Medicinal Chemistry. 52: 2067-75. PMID 19281222 DOI: 10.1021/jm801605r  0.56
2009 Conrad F, Zhu X, Zhang X, Chalkley RJ, Burlingame AL, Marks JD, Liu B. Human antibodies targeting cell surface antigens overexpressed by the hormone refractory metastatic prostate cancer cells: ICAM-1 is a tumor antigen that mediates prostate cancer cell invasion. Journal of Molecular Medicine (Berlin, Germany). 87: 507-14. PMID 19219419 DOI: 10.1007/s00109-009-0446-3  0.56
2009 Zhang W, St-Gelais F, Grabner CP, Trinidad JC, Sumioka A, Morimoto-Tomita M, Kim KS, Straub C, Burlingame AL, Howe JR, Tomita S. A transmembrane accessory subunit that modulates kainate-type glutamate receptors. Neuron. 61: 385-96. PMID 19217376 DOI: 10.1016/j.neuron.2008.12.014  0.56
2009 Thalhammer A, Trinidad JC, Burlingame AL, Schoepfer R. Densin-180: revised membrane topology, domain structure and phosphorylation status. Journal of Neurochemistry. 109: 297-302. PMID 19187442 DOI: 10.1111/j.1471-4159.2009.05951.x  0.56
2009 Bradshaw RA, Burlingame AL. Seven years of good luck Molecular and Cellular Proteomics. 8: 1. DOI: 10.1074/mcp.E900001-MCP200  0.56
2008 Yam AY, Xia Y, Lin HT, Burlingame A, Gerstein M, Frydman J. Defining the TRiC/CCT interactome links chaperonin function to stabilization of newly made proteins with complex topologies. Nature Structural & Molecular Biology. 15: 1255-62. PMID 19011634 DOI: 10.1038/nsmb.1515  0.56
2008 Mahrus S, Trinidad JC, Barkan DT, Sali A, Burlingame AL, Wells JA. Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini. Cell. 134: 866-76. PMID 18722006 DOI: 10.1016/j.cell.2008.08.012  0.56
2008 Tang W, Kim TW, Oses-Prieto JA, Sun Y, Deng Z, Zhu S, Wang R, Burlingame AL, Wang ZY. BSKs mediate signal transduction from the receptor kinase BRI1 in Arabidopsis. Science (New York, N.Y.). 321: 557-60. PMID 18653891 DOI: 10.1126/science.1156973  0.36
2008 Chalkley RJ, Baker PR, Medzihradszky KF, Lynn AJ, Burlingame AL. In-depth analysis of tandem mass spectrometry data from disparate instrument types. Molecular & Cellular Proteomics : McP. 7: 2386-98. PMID 18653769 DOI: 10.1074/mcp.M800021-MCP200  0.32
2008 Gräub R, Lancero H, Pedersen A, Chu M, Padmanabhan K, Xu XQ, Spitz P, Chalkley R, Burlingame AL, Stokoe D, Bernstein HS. Cell cycle-dependent phosphorylation of human CDC5 regulates RNA processing. Cell Cycle (Georgetown, Tex.). 7: 1795-803. PMID 18583928 DOI: 10.4161/cc.7.12.6017  0.56
2008 Li Z, Lee JH, Chu F, Burlingame AL, Günzl A, Wang CC. Identification of a novel chromosomal passenger complex and its unique localization during cytokinesis in Trypanosoma brucei. Plos One. 3: e2354. PMID 18545648 DOI: 10.1371/journal.pone.0002354  0.4
2008 Hirsch J, Niemann CU, Hansen KC, Choi S, Su X, Frank JA, Fang X, Hirose R, Theodore P, Sapru A, Burlingame AL, Matthay MA. Alterations in the proteome of pulmonary alveolar type II cells in the rat after hepatic ischemia-reperfusion. Critical Care Medicine. 36: 1846-54. PMID 18496381 DOI: 10.1097/CCM.0b013e31816f49cb  0.56
2008 Casati P, Campi M, Chu F, Suzuki N, Maltby D, Guan S, Burlingame AL, Walbot V. Histone acetylation and chromatin remodeling are required for UV-B-dependent transcriptional activation of regulated genes in maize. The Plant Cell. 20: 827-42. PMID 18398050 DOI: 10.1105/tpc.107.056457  0.56
2008 Tomizawa M, Maltby D, Talley TT, Durkin KA, Medzihradszky KF, Burlingame AL, Taylor P, Casida JE. Atypical nicotinic agonist bound conformations conferring subtype selectivity. Proceedings of the National Academy of Sciences of the United States of America. 105: 1728-32. PMID 18230720 DOI: 10.1073/pnas.0711724105  0.56
2008 Trinidad JC, Thalhammer A, Specht CG, Lynn AJ, Baker PR, Schoepfer R, Burlingame AL. Quantitative analysis of synaptic phosphorylation and protein expression. Molecular & Cellular Proteomics : McP. 7: 684-96. PMID 18056256 DOI: 10.1074/mcp.M700170-MCP200  0.56
2007 Walther TC, Aguilar PS, Fröhlich F, Chu F, Moreira K, Burlingame AL, Walter P. Pkh-kinases control eisosome assembly and organization. The Embo Journal. 26: 4946-55. PMID 18034155 DOI: 10.1038/sj.emboj.7601933  0.56
2007 Olsen O, Funke L, Long JF, Fukata M, Kazuta T, Trinidad JC, Moore KA, Misawa H, Welling PA, Burlingame AL, Zhang M, Bredt DS. Renal defects associated with improper polarization of the CRB and DLG polarity complexes in MALS-3 knockout mice. The Journal of Cell Biology. 179: 151-64. PMID 17923534 DOI: 10.1083/jcb.200702054  0.56
2007 Deng Z, Zhang X, Tang W, Oses-Prieto JA, Suzuki N, Gendron JM, Chen H, Guan S, Chalkley RJ, Peterman TK, Burlingame AL, Wang ZY. A proteomics study of brassinosteroid response in Arabidopsis. Molecular & Cellular Proteomics : McP. 6: 2058-71. PMID 17848588 DOI: 10.1074/mcp.M700123-MCP200  0.32
2007 Gampala SS, Kim TW, He JX, Tang W, Deng Z, Bai MY, Guan S, Lalonde S, Sun Y, Gendron JM, Chen H, Shibagaki N, Ferl RJ, Ehrhardt D, Chong K, ... Burlingame AL, et al. An essential role for 14-3-3 proteins in brassinosteroid signal transduction in Arabidopsis. Developmental Cell. 13: 177-89. PMID 17681130 DOI: 10.1016/j.devcel.2007.06.009  0.36
2007 Tomizawa M, Maltby D, Medzihradszky KF, Zhang N, Durkin KA, Presley J, Talley TT, Taylor P, Burlingame AL, Casida JE. Defining nicotinic agonist binding surfaces through photoaffinity labeling. Biochemistry. 46: 8798-806. PMID 17614369 DOI: 10.1021/bi700667v  0.56
2007 Tomizawa M, Talley TT, Maltby D, Durkin KA, Medzihradszky KF, Burlingame AL, Taylor P, Casida JE. Mapping the elusive neonicotinoid binding site. Proceedings of the National Academy of Sciences of the United States of America. 104: 9075-80. PMID 17485662 DOI: 10.1073/pnas.0703309104  0.56
2007 Hirsch J, Hansen KC, Sapru A, Frank JA, Chalkley RJ, Fang X, Trinidad JC, Baker P, Burlingame AL, Matthay MA. Impact of low and high tidal volumes on the rat alveolar epithelial type II cell proteome. American Journal of Respiratory and Critical Care Medicine. 175: 1006-13. PMID 17363773 DOI: 10.1164/rccm.200605-621OC  0.56
2007 Simon MD, Chu F, Racki LR, de la Cruz CC, Burlingame AL, Panning B, Narlikar GJ, Shokat KM. The site-specific installation of methyl-lysine analogs into recombinant histones. Cell. 128: 1003-12. PMID 17350582 DOI: 10.1016/j.cell.2006.12.041  0.4
2006 Chu F, Mahrus S, Craik CS, Burlingame AL. Isotope-coded and affinity-tagged cross-linking (ICATXL): an efficient strategy to probe protein interaction surfaces. Journal of the American Chemical Society. 128: 10362-3. PMID 16895390 DOI: 10.1021/ja0614159  0.56
2006 Chu F, Maynard JC, Chiosis G, Nicchitta CV, Burlingame AL. Identification of novel quaternary domain interactions in the Hsp90 chaperone, GRP94. Protein Science : a Publication of the Protein Society. 15: 1260-9. PMID 16731965 DOI: 10.1110/ps.052065106  0.56
2006 Conway MCP, Whittal RM, Baldwin MA, Burlingame AL, Balhorn R. Electrospray Mass Spectrometry of NeuAc Oligomers Associated with the C Fragment of the Tetanus Toxin Journal of the American Society For Mass Spectrometry. 17: 967-976. PMID 16713287 DOI: 10.1016/j.jasms.2006.03.004  0.56
2006 Bradshaw RA, Burlingame AL, Carr S, Aebersold R. Reporting protein identification data: The next generation of guidelines Molecular and Cellular Proteomics. 5: 787-788. PMID 16670253 DOI: 10.1074/mcp.E600005-MCP200  0.56
2006 Recht J, Tsubota T, Tanny JC, Diaz RL, Berger JM, Zhang X, Garcia BA, Shabanowitz J, Burlingame AL, Hunt DF, Kaufman PD, Allis CD. Histone chaperone Asf1 is required for histone H3 lysine 56 acetylation, a modification associated with S phase in mitosis and meiosis. Proceedings of the National Academy of Sciences of the United States of America. 103: 6988-93. PMID 16627621 DOI: 10.1073/pnas.0601676103  0.56
2006 Burlingame AL, Haug P, Belsky T, Calvin M. OCCURRENCE OF BIOGENIC STERANES AND PENTACYCLIC TRITERPANES IN AN EOCENE SHALE (52 MILLION YEARS) AND IN AN EARLY PRECAMBRIAN SHALE (2.7 BILLION YEARS): A PRELIMINARY REPORT. Proceedings of the National Academy of Sciences of the United States of America. 54: 1406-12. PMID 16591314 DOI: 10.1073/pnas.54.5.1406  0.36
2006 Hirsch J, Hansen KC, Choi S, Noh J, Hirose R, Roberts JP, Matthay MA, Burlingame AL, Maher JJ, Niemann CU. Warm ischemia-induced alterations in oxidative and inflammatory proteins in hepatic Kupffer cells in rats. Molecular & Cellular Proteomics : McP. 5: 979-86. PMID 16500929 DOI: 10.1074/mcp.M500320-MCP200  0.56
2006 Vosseller K, Trinidad JC, Chalkley RJ, Specht CG, Thalhammer A, Lynn AJ, Snedecor JO, Guan S, Medzihradszky KF, Maltby DA, Schoepfer R, Burlingame AL. O-linked N-acetylglucosamine proteomics of postsynaptic density preparations using lectin weak affinity chromatography and mass spectrometry. Molecular & Cellular Proteomics : McP. 5: 923-34. PMID 16452088 DOI: 10.1074/mcp.T500040-MCP200  0.56
2006 Trinidad JC, Specht CG, Thalhammer A, Schoepfer R, Burlingame AL. Comprehensive identification of phosphorylation sites in postsynaptic density preparations. Molecular & Cellular Proteomics : McP. 5: 914-22. PMID 16452087 DOI: 10.1074/mcp.T500041-MCP200  0.56
2006 Jiménez CR, Spijker S, de Schipper S, Lodder JC, Janse CK, Geraerts WP, van Minnen J, Syed NI, Burlingame AL, Smit AB, Li K. Peptidomics of a single identified neuron reveals diversity of multiple neuropeptides with convergent actions on cellular excitability. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 518-29. PMID 16407549 DOI: 10.1523/JNEUROSCI.2566-05.2006  0.56
2006 Chu F, Nusinow DA, Chalkley RJ, Plath K, Panning B, Burlingame AL. Mapping post-translational modifications of the histone variant MacroH2A1 using tandem mass spectrometry. Molecular & Cellular Proteomics : McP. 5: 194-203. PMID 16210244 DOI: 10.1074/mcp.M500285-MCP200  0.56
2005 Olsen O, Moore KA, Fukata M, Kazuta T, Trinidad JC, Kauer FW, Streuli M, Misawa H, Burlingame AL, Nicoll RA, Bredt DS. Neurotransmitter release regulated by a MALS-liprin-alpha presynaptic complex. The Journal of Cell Biology. 170: 1127-34. PMID 16186258 DOI: 10.1083/jcb.200503011  0.56
2005 Baxter BK, Abeliovich H, Zhang X, Stirling AG, Burlingame AL, Goldfarb DS. Atg19p ubiquitination and the cytoplasm to vacuole trafficking pathway in yeast. The Journal of Biological Chemistry. 280: 39067-76. PMID 16186126 DOI: 10.1074/jbc.M508064200  0.56
2005 Burlingame AL, Zhang X, Chalkley RJ. Mass spectrometric analysis of histone posttranslational modifications. Methods (San Diego, Calif.). 36: 383-94. PMID 16112065 DOI: 10.1016/j.ymeth.2005.03.009  0.32
2005 Casati P, Zhang X, Burlingame AL, Walbot V. Analysis of leaf proteome after UV-B irradiation in maize lines differing in sensitivity. Molecular & Cellular Proteomics : McP. 4: 1673-85. PMID 16043824 DOI: 10.1074/mcp.M500173-MCP200  0.56
2005 Bradshaw RA, Burlingame AL. From proteins to proteomics Iubmb Life. 57: 267-272. PMID 16036609 DOI: 10.1080/15216540500091536  0.56
2005 Wysocka J, Swigut T, Milne TA, Dou Y, Zhang X, Burlingame AL, Roeder RG, Brivanlou AH, Allis CD. WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development. Cell. 121: 859-72. PMID 15960974 DOI: 10.1016/j.cell.2005.03.036  0.56
2005 Chalkley RJ, Baker PR, Huang L, Hansen KC, Allen NP, Rexach M, Burlingame AL. Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: II. New developments in Protein Prospector allow for reliable and comprehensive automatic analysis of large datasets. Molecular & Cellular Proteomics : McP. 4: 1194-204. PMID 15937296 DOI: 10.1074/mcp.D500002-MCP200  0.56
2005 Chalkley RJ, Baker PR, Hansen KC, Medzihradszky KF, Allen NP, Rexach M, Burlingame AL. Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: I. How much of the data is theoretically interpretable by search engines? Molecular & Cellular Proteomics : McP. 4: 1189-93. PMID 15923566 DOI: 10.1074/mcp.D500001-MCP200  0.56
2005 Fukata Y, Tzingounis AV, Trinidad JC, Fukata M, Burlingame AL, Nicoll RA, Bredt DS. Molecular constituents of neuronal AMPA receptors. The Journal of Cell Biology. 169: 399-404. PMID 15883194 DOI: 10.1083/jcb.200501121  0.56
2005 Tanaka M, Bateman R, Rauh D, Vaisberg E, Ramachandani S, Zhang C, Hansen KC, Burlingame AL, Trautman JK, Shokat KM, Adams CL. An unbiased cell morphology-based screen for new, biologically active small molecules. Plos Biology. 3: e128. PMID 15799708 DOI: 10.1371/journal.pbio.0030128  0.32
2005 Trinidad JC, Thalhammer A, Specht CG, Schoepfer R, Burlingame AL. Phosphorylation state of postsynaptic density proteins. Journal of Neurochemistry. 92: 1306-16. PMID 15748150 DOI: 10.1111/j.1471-4159.2004.02943.x  0.56
2005 Vosseller K, Hansen KC, Chalkley RJ, Trinidad JC, Wells L, Hart GW, Burlingame AL. Quantitative analysis of both protein expression and serine / threonine post-translational modifications through stable isotope labeling with dithiothreitol. Proteomics. 5: 388-98. PMID 15648052 DOI: 10.1002/pmic.200401066  0.56
2005 Smith-Beckerman DM, Fung KW, Williams KE, Auersperg N, Godwin AK, Burlingame AL. Proteome changes in ovarian epithelial cells derived from women with BRCA1 mutations and family histories of cancer. Molecular & Cellular Proteomics : McP. 4: 156-68. PMID 15591324 DOI: 10.1074/mcp.M400157-MCP200  0.56
2004 Baldwin MA, Burlingame AL, Nikolaev E. Victor L. Talroze: 1922-2004. Journal of the American Society For Mass Spectrometry. 15: 1517-9. PMID 27518148 DOI: 10.1016/j.jasms.2004.07.003  0.32
2004 Chu F, Shan SO, Moustakas DT, Alber F, Egea PF, Stroud RM, Walter P, Burlingame AL. Unraveling the interface of signal recognition particle and its receptor by using chemical cross-linking and tandem mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 101: 16454-9. PMID 15546976 DOI: 10.1073/pnas.0407456101  0.56
2004 Vergés M, Luton F, Gruber C, Tiemann F, Reinders LG, Huang L, Burlingame AL, Haft CR, Mostov KE. The mammalian retromer regulates transcytosis of the polymeric immunoglobulin receptor. Nature Cell Biology. 6: 763-9. PMID 15247922 DOI: 10.1038/ncb1153  0.56
2004 Medzihradszky KF, Zhang X, Chalkley RJ, Guan S, McFarland MA, Chalmers MJ, Marshall AG, Diaz RL, Allis CD, Burlingame AL. Characterization of Tetrahymena histone H2B variants and posttranslational populations by electron capture dissociation (ECD) Fourier transform ion cyclotron mass spectrometry (FT-ICR MS). Molecular & Cellular Proteomics : McP. 3: 872-86. PMID 15199121 DOI: 10.1074/mcp.M400041-MCP200  0.56
2004 Hirsch J, Hansen KC, Burlingame AL, Matthay MA. Proteomics: Current techniques and potential applications to lung disease American Journal of Physiology - Lung Cellular and Molecular Physiology. 287. PMID 15187006 DOI: 10.1152/ajplung.00301.2003  0.56
2004 Cutillas PR, Chalkley RJ, Hansen KC, Cramer R, Norden AGW, Waterfield MD, Burlingame AL, Unwin RJ. The urinary proteome in Fanconi syndrome implies specificity in the reabsorption of proteins by renal proximal tubule cells American Journal of Physiology - Renal Physiology. 287. PMID 15140760 DOI: 10.1152/ajprenal.00018.2004  0.56
2004 Perlson E, Medzihradszky KF, Darula Z, Munno DW, Syed NI, Burlingame AL, Fainzilber M. Differential proteomics reveals multiple components in retrogradely transported axoplasm after nerve injury. Molecular & Cellular Proteomics : McP. 3: 510-20. PMID 14973157 DOI: 10.1074/mcp.M400004-MCP200  0.56
2004 Medzihradszky KF, Darula Z, Perlson E, Fainzilber M, Chalkley RJ, Ball H, Greenbaum D, Bogyo M, Tyson DR, Bradshaw RA, Burlingame AL. O-sulfonation of serine and threonine: mass spectrometric detection and characterization of a new posttranslational modification in diverse proteins throughout the eukaryotes. Molecular & Cellular Proteomics : McP. 3: 429-40. PMID 14752058 DOI: 10.1074/mcp.M300140-MCP200  0.56
2004 Perlson E, Hanz S, Medzihradszky KF, Burlingame AL, Fainzilber M. From snails to sciatic nerve: Retrograde injury signaling from axon to soma in lesioned neurons. Journal of Neurobiology. 58: 287-94. PMID 14704959 DOI: 10.1002/neu.10316  0.56
2003 Oda Y, Sihlbom C, Chalkley RJ, Huang L, Rachez C, Chang CP, Burlingame AL, Freedman LP, Bikle DD. Two distinct coactivators, DRIP/mediator and SRC/p160, are differentially involved in vitamin D receptor transactivation during keratinocyte differentiation. Molecular Endocrinology (Baltimore, Md.). 17: 2329-39. PMID 12893881 DOI: 10.1210/me.2003-0063  0.56
2003 Hansen KC, Schmitt-Ulms G, Chalkley RJ, Hirsch J, Baldwin MA, Burlingame AL. Mass spectrometric analysis of protein mixtures at low levels using cleavable 13C-isotope-coded affinity tag and multidimensional chromatography. Molecular & Cellular Proteomics : McP. 2: 299-314. PMID 12766231 DOI: 10.1074/mcp.M300021-MCP200  0.56
2002 Williams KE, Carver TA, Miranda JJ, Kautiainen A, Vogel JS, Dingley K, Baldwin MA, Turteltaub KW, Burlingame AL. Attomole detection of in vivo protein targets of benzene in mice: evidence for a highly reactive metabolite. Molecular & Cellular Proteomics : McP. 1: 885-95. PMID 12488464 DOI: 10.1074/MCP.M200067-MCP200  0.56
2002 Hart SR, Waterfield MD, Burlingame AL, Cramer R. Factors governing the solubilization of phosphopeptides retained on ferric NTA IMAC beads and their analysis by MALDI TOFMS. Journal of the American Society For Mass Spectrometry. 13: 1042-51. PMID 12322952 DOI: 10.1016/S1044-0305(02)00432-4  0.56
2002 Zhang K, Williams KE, Huang L, Yau P, Siino JS, Bradbury EM, Jones PR, Minch MJ, Burlingame AL. Histone acetylation and deacetylation: identification of acetylation and methylation sites of HeLa histone H4 by mass spectrometry. Molecular & Cellular Proteomics : McP. 1: 500-8. PMID 12239278 DOI: 10.1074/MCP.M200031-MCP200  0.56
2002 Huang L, Baldwin MA, Maltby DA, Medzihradszky KF, Baker PR, Allen N, Rexach M, Edmondson RD, Campbell J, Juhasz P, Martin SA, Vestal ML, Burlingame AL. The identification of protein-protein interactions of the nuclear pore complex of Saccharomyces cerevisiae using high throughput matrix-assisted laser desorption ionization time-of-flight tandem mass spectrometry. Molecular & Cellular Proteomics : McP. 1: 434-50. PMID 12169684 DOI: 10.1074/MCP.M200027-MCP200  0.56
2002 Zhang K, Tang H, Huang L, Blankenship JW, Jones PR, Xiang F, Yau PM, Burlingame AL. Identification of acetylation and methylation sites of histone H3 from chicken erythrocytes by high-accuracy matrix-assisted laser desorption ionization-time-of-flight, matrix-assisted laser desorption ionization-postsource decay, and nanoelectrospray ionization tandem mass spectrometry. Analytical Biochemistry. 306: 259-69. PMID 12123664 DOI: 10.1006/abio.2002.5719  0.56
2002 Benvenuti S, Cramer R, Quinn CC, Bruce J, Zvelebil M, Corless S, Bond J, Yang A, Hockfield S, Burlingame AL, Waterfield MD, Jat PS. Differential proteome analysis of replicative senescence in rat embryo fibroblasts. Molecular & Cellular Proteomics : McP. 1: 280-92. PMID 12096110 DOI: 10.1074/MCP.M100028-MCP200  0.56
2002 Hawkes DB, Adams GW, Burlingame AL, Ortiz de Montellano PR, De Voss JJ. Cytochrome P450(cin) (CYP176A), isolation, expression, and characterization. The Journal of Biological Chemistry. 277: 27725-32. PMID 12016226 DOI: 10.1074/jbc.M203382200  0.56
2001 Qiu Y, Benet LZ, Burlingame AL. Identification of hepatic protein targets of the reactive metabolites of the non-hepatotoxic regioisomer of acetaminophen, 3'-hydroxyacetanilide, in the mouse in vivo using two-dimensional gel electrophoresis and mass spectrometry Advances in Experimental Medicine and Biology. 500: 663-673. PMID 11765013  0.56
2001 Person MD, Brown KC, Mahrus S, Craik CS, Burlingame AL. Novel inter-protein cross-link identified in the GGH-ecotin D137Y dimer Protein Science. 10: 1549-1562. PMID 11468352 DOI: 10.1110/PS.PS.46601  0.56
2001 Habelhah H, Shah K, Huang L, Burlingame AL, Shokat KM, Ronai Z. Identification of new JNK substrate using ATP pocket mutant JNK and a corresponding ATP analogue. The Journal of Biological Chemistry. 276: 18090-5. PMID 11259409 DOI: 10.1074/jbc.M011396200  0.56
2001 Polson AG, Huang L, Lukac DM, Blethrow JD, Morgan DO, Burlingame AL, Ganem D. Kaposi's sarcoma-associated herpesvirus K-bZIP protein is phosphorylated by cyclin-dependent kinases. Journal of Virology. 75: 3175-84. PMID 11238844 DOI: 10.1128/JVI.75.7.3175-3184.2001  0.56
2001 Habelhah H, Shah K, Huang L, Ostareck-Lederer A, Burlingame AL, Shokat KM, Hentze MW, Ronai Z. ERK phosphorylation drives cytoplasmic accumulation of hnRNP-K and inhibition of mRNA translation. Nature Cell Biology. 3: 325-30. PMID 11231586 DOI: 10.1038/35060131  0.56
2001 Medzihradszky KF, Leffler H, Baldwin MA, Burlingame AL. Protein identification by in-gel digestion, high-performance liquid chromatography, and mass spectrometry: peptide analysis by complementary ionization techniques. Journal of the American Society For Mass Spectrometry. 12: 215-21. PMID 11212006 DOI: 10.1016/S1044-0305(00)00214-2  0.56
2000 Whittal RM, Ball HL, Cohen FE, Burlingame AL, Prusiner SB, Baldwin MA. Copper binding to octarepeat peptides of the prion protein monitored by mass spectrometry. Protein Science : a Publication of the Protein Society. 9: 332-43. PMID 10716185 DOI: 10.1110/ps.9.2.332  0.56
2000 Medzihradszky KF, Campbell JM, Baldwin MA, Falick AM, Juhasz P, Vestal ML, Burlingame AL. The characteristics of peptide collision-induced dissociation using a high-performance MALDI-TOF/TOF tandem mass spectrometer. Analytical Chemistry. 72: 552-8. PMID 10695141 DOI: 10.1021/ac990809y  0.32
1999 Bossi A, Patel MJ, Webb EJ, Baldwin MA, Jacob RJ, Burlingame AL, Righetti PG. Analysis of cross-linked human hemoglobin by conventional isoelectric focusing, immobilized pH gradients, capillary electrophoresis, and mass spectrometry. Electrophoresis. 20: 2810-7. PMID 10546811 DOI: 10.1002/(SICI)1522-2683(19991001)20:14<2810::AID-ELPS2810>3.0.CO;2-6  0.32
1999 Talrose VL, Person MD, Whittal RM, Walls FC, Burlingame AL, Baldwin MA. Insight into absorption of radiation/energy transfer in infrared matrix-assisted laser desorption/ionization: The roles of matrices, water and metal substrates Rapid Communications in Mass Spectrometry. 13: 2191-2198. PMID 10523780 DOI: 10.1002/(SICI)1097-0231(19991115)13:21<2191::AID-RCM774>3.0.CO;2-I  0.56
1999 Huang L, Shen M, Chernushevich I, Burlingame AL, Wang CC, Robertson CD. Identification and isolation of three proteasome subunits and their encoding genes from Trypanosoma brucei. Molecular and Biochemical Parasitology. 102: 211-23. PMID 10498178 DOI: 10.1016/S0166-6851(99)00096-1  0.56
1999 Wolfender JL, Chu F, Ball H, Wolfender F, Fainzilber M, Baldwin MA, Burlingame AL. Identification of tyrosine sulfation in Conus pennaceus conotoxins alpha-PnIA and alpha-PnIB: further investigation of labile sulfo- and phosphopeptides by electrospray, matrix-assisted laser desorption/ionization (MALDI) and atmospheric pressure MALDI mass spectrometry. Journal of Mass Spectrometry : Jms. 34: 447-54. PMID 10226369 DOI: 10.1002/(SICI)1096-9888(199904)34:4<447::AID-JMS801>3.0.CO;2-1  0.56
1998 Qiu Y, Benet LZ, Burlingame AL. Identification of the hepatic protein targets of reactive metabolites of acetaminophen in vivo in mice using two-dimensional gel electrophoresis and mass spectrometry Journal of Biological Chemistry. 273: 17940-17953. PMID 9651401 DOI: 10.1074/jbc.273.28.17940  0.56
1998 Prakobphol A, Thomsson KA, Hansson GC, Rosen SD, Singer MS, Phillips NJ, Medzihradszky KF, Burlingame AL, Leffler H, Fisher SJ. Human low-molecular-weight salivary mucin expresses the sialyl lewisx determinant and has L-selectin ligand activity. Biochemistry. 37: 4916-27. PMID 9538010 DOI: 10.1021/bi972612a  0.56
1998 Brown KC, Yu Z, Burlingame AL, Craik CS. Determining protein - Protein interactions by oxidative cross-linking of a glycine-glycine-histidine fusion protein Biochemistry. 37: 4397-4406. PMID 9521759 DOI: 10.1021/bi9728046  0.56
1998 Fainzilber M, Nakamura T, Lodder JC, Zlotkin E, Kits KS, Burlingame AL. gamma-Conotoxin-PnVIIA, a gamma-carboxyglutamate-containing peptide agonist of neuronal pacemaker cation currents. Biochemistry. 37: 1470-7. PMID 9484216 DOI: 10.1021/bi971571f  0.56
1997 Caldera PS, Yu Z, Knegtel RM, McPhee F, Burlingame AL, Craik CS, Kuntz ID, Ortiz de Montellano PR. Alkylation of a catalytic aspartate group of the SIV protease by an epoxide inhibitor. Bioorganic & Medicinal Chemistry. 5: 2019-27. PMID 9416419 DOI: 10.1016/S0968-0896(97)00131-4  0.56
1997 Wang SX, Klinman JP, Medzihradszky KF, Burlingame AL. The isolation and characterization of active site peptides in lysyl oxidase Techniques in Protein Chemistry. 8: 351-361. DOI: 10.1016/S1080-8914(97)80036-1  0.56
1996 Nakamura T, Yu Z, Fainzilber M, Burlingame AL. Mass spectrometric-based revision of the structure of a cysteine-rich peptide toxin with gamma-carboxyglutamic acid, TxVIIA, from the sea snail, Conus textile. Protein Science : a Publication of the Protein Society. 5: 524-30. PMID 8868490 DOI: 10.1002/pro.5560050315  0.56
1996 Wang SX, Mure M, Medzihradszky KF, Burlingame AL, Brown DE, Dooley DM, Smith AJ, Kagan HM, Klinman JP. A crosslinked cofactor in lysyl oxidase: redox function for amino acid side chains. Science (New York, N.Y.). 273: 1078-84. PMID 8688089  0.56
1996 Fainzilber M, Lodder JC, van der Schors RC, Li KW, Yu Z, Burlingame AL, Geraerts WP, Kits KS. A novel hydrophobic omega-conotoxin blocks molluscan dihydropyridine-sensitive calcium channels. Biochemistry. 35: 8748-52. PMID 8679638 DOI: 10.1021/bi9602674  0.56
1996 Yu Z, Caldera P, McPhee F, De Voss JJ, Jones PR, Burlingame AL, Kuntz ID, Craik CS, Ortiz De Montellano PR. Irreversible inhibition of the HIV-1 protease: Targeting alkylating agents to the catalytic aspartate groups Journal of the American Chemical Society. 118: 5846-5856. DOI: 10.1021/ja954069w  0.56
1996 Yates JR, Eng JK, Clauser KR, Burlingame AL. Search of sequence databases with uninterpreted high-energy collision-induced dissociation spectra of peptides Journal of the American Society For Mass Spectrometry. 7: 1089-1098. DOI: 10.1016/S1044-0305(96)00079-7  0.56
1996 Lipniunas PH, Townsend RR, Burlingame AL, Hindsgaul O. High-energy collision-induced dissociation mass spectrometry of synthetic mannose-6-phosphate oligosaccharides Journal of the American Society For Mass Spectrometry. 7: 182-188. DOI: 10.1016/1044-0305(95)00635-4  0.56
1995 Clauser KR, Hall SC, Smith DM, Webb JW, Andrews LE, Tran HM, Epstein LB, Burlingame AL. Rapid mass spectrometric peptide sequencing and mass matching for characterization of human melanoma proteins isolated by two-dimensional PAGE Proceedings of the National Academy of Sciences of the United States of America. 92: 5072-5076. PMID 7761450 DOI: 10.1073/pnas.92.11.5072  0.56
1995 Tsutakawa SE, Medzihradszky KF, Flint AJ, Burlingame AL, Koshland DE. Determination of in vivo phosphorylation sites in protein kinase C Journal of Biological Chemistry. 270: 26807-26812. PMID 7592921 DOI: 10.1074/jbc.270.45.26807  0.56
1994 Fainzilber M, Hasson A, Oren R, Burlingame AL, Gordon D, Spira ME, Zlotkin E. New mollusc-specific alpha-conotoxins block Aplysia neuronal acetylcholine receptors. Biochemistry. 33: 9523-9. PMID 8068627 DOI: 10.1021/bi00198a018  0.56
1993 Stahl N, Baldwin MA, Teplow DB, Hood L, Gibson BW, Burlingame AL, Prusiner SB. Structural studies of the scrapie prion protein using mass spectrometry and amino acid sequencing. Biochemistry. 32: 1991-2002. PMID 8448158  0.56
1993 Mel SF, Falick AM, Burlingame AL, Stroud RM. Mapping a membrane-associated conformation of colicin Ia. Biochemistry. 32: 9473-9. PMID 7690252  0.56
1992 Sanders DA, Gillece-Castro BL, Burlingame AL, Koshland DE. Phosphorylation site of NtrC, a protein phosphatase whose covalent intermediate activates transcription Journal of Bacteriology. 174: 5117-5122. PMID 1321122 DOI: 10.1128/jb.174.15.5117-5122.1992  0.56
1992 Hines WM, Falick AM, Burlingame AL, Gibson BW. Pattern-based algorithm for peptide sequencing from tandem high energy collision-induced dissociation mass spectra Journal of the American Society For Mass Spectrometry. 3: 326-336. DOI: 10.1016/1044-0305(92)87060-C  0.56
1989 Poulter L, Earnest JP, Stroud RM, Burlingame AL. Structure, oligosaccharide structures, and posttranslationally modified sites of the nicotinic acetylcholine receptor Proceedings of the National Academy of Sciences of the United States of America. 86: 6645-6649. PMID 2771948 DOI: 10.1073/pnas.86.17.6645  0.56
1989 Gibson BW, Webb JW, Yamasaki R, Fisher SJ, Burlingame AL, Mandrell RE, Schneider H, McLeod Griffiss J. Structure and heterogeneity of the oligosaccharides from the lipopolysaccharides of a pyocin-resistant Neisseria gonorrhoeae Proceedings of the National Academy of Sciences of the United States of America. 86: 17-21. PMID 2492099 DOI: 10.1073/pnas.86.1.17  0.56
1988 Poulter L, Earnest JP, Stroud RM, Burlingame AL. Cesium ion liquid secondary ion mass spectrometry of membrane‐bound glycoproteins: Structural and topological considerations of acetylcholine receptor from Torpedo californica Biological Mass Spectrometry. 16: 25-30. PMID 3242677 DOI: 10.1002/bms.1200160105  0.56
1988 Webb JW, Jiang K, Gillece-Castro BL, Tarentino AL, Plummer TH, Byrd JC, Fisher SJ, Burlingame AL. Structural characterization of intact, branched oligosaccharides by high performance liquid chromatography and liquid secondary ion mass spectrometry Analytical Biochemistry. 169: 337-349. PMID 3132867 DOI: 10.1016/0003-2697(88)90293-X  0.56
1985 Wickramanayake PP, Deinzer ML, Burlingame AL. Positive and negative liquid secondary ion mass spectrometry of chloro- and nitrophenylglucuronides Biomedical Mass Spectrometry. 12: 127-133. PMID 3160397  0.56
1985 Wickramanayake PP, Arbogast BL, Buhler DR, Deinzer ML, Burlingame AL. Alkylation of nucleosides and nucleotides by dehydroretronecine; characterization of covalent adducts by liquid secondary ion mass spectrometry Journal of the American Chemical Society. 107: 2485-2488.  0.56
1982 Xu XB, Nachtman JP, Jin ZL, Wei ET, Rappaport SM, Burlingame AL. Isolation and identification of mutagenic nitro-pah in diesel-exhaust particulates Analytica Chimica Acta. 136: 163-174. DOI: 10.1016/S0003-2670(01)95375-9  0.56
1981 Straub KM, Burlingame AL. Carcinogen binding to DNA Biomedical Mass Spectrometry. 8: 431-435. PMID 7306680 DOI: 10.1002/bms.1200080914  0.56
1981 Linscheid M, D'Angona J, Burlingame AL, Dell A, Ballou CE. Field desorption mass spectrometry of oligosaccharides. Proceedings of the National Academy of Sciences of the United States of America. 78: 1471-5. PMID 6940169 DOI: 10.1073/pnas.78.3.1471  0.56
1981 Xu XB, Nachtman JP, Rappaport SM, Wei ET, Lewis S, Burlingame AL. Identification of 2-nitrofluorene in diesel exhaust particulates Journal of Applied Toxicology. 1: 196-198. PMID 6193162 DOI: 10.1002/jat.2550010312  0.56
1977 Straub KM, Meehan T, Burlingame AL, Calvin M. Identification of the major adducts formed by reaction of benzo(a)pyrene diol epoxide with DNA in vitro. Proceedings of the National Academy of Sciences of the United States of America. 74: 5285-9. PMID 271953 DOI: 10.1073/pnas.74.12.5285  0.68
1975 Derrick PJ, Falick AM, Burlingame AL. Unimolecular gas-phase hydrogen randomization within 2-Methyl-propane radical cations Journal of the Chemical Society, Perkin Transactions 2. 98-101. DOI: 10.1039/P29750000098  0.56
1975 Derrick PJ, Falick AM, Burlingame AL. Kinetics and mechanisms of unimolecular gas-phase reactions of 2-methylpropane radical-ions at times as short as 20 picoseconds and at longer times Journal of the Chemical Society, Faraday Transactions 1: Physical Chemistry in Condensed Phases. 71: 1503-1508. DOI: 10.1039/F19757101503  0.56
1973 Simoneit BR, Smith DH, Eglinton G, Burlingame AL. Application of real-time mass spectrometric techniques to environmental organic geochemistry. II. Organic matter in San Francisco Bay area water. Archives of Environmental Contamination and Toxicology. 1: 193-208. PMID 4776414 DOI: 10.1007/BF01985744  0.68
1973 Cox RE, Burlingame AL, Wilson DM, Eglinton G, Maxwell JR. Botryococcene-a tetramethylated acyclic triterpenoid of algal origin Journal of the Chemical Society, Chemical Communications. 284-285. DOI: 10.1039/C39730000284  0.56
1973 Falick AM, Derrick PJ, Burlingame AL. The use of a double focusing field ionization mass spectrometer for the study of gas phase ion decomposition kinetics at 10-11 to 10-5 sec International Journal of Mass Spectrometry and Ion Physics. 12: 101-114. DOI: 10.1016/0020-7381(73)80093-2  0.56
1972 Burlingame AL, Balogh B, Welch J, Lewis S, Wilson D. Carbon-13 nuclear magnetic resonance in biosynthetic studies of lipids Journal of the Chemical Society, Chemical Communications. 318b-319. DOI: 10.1039/C3972000318b  0.56
1972 Balogh B, Wilson DM, Burlingame AL, Jen Lee C, Snajberk K, Zavarin E. 4,4-Dimethyl-2-cyclohepten-1-one in the cortical oleoresin of Abies balsamea Phytochemistry. 11: 1481-1484. DOI: 10.1016/S0031-9422(00)90106-7  0.56
1970 Burlingame AL, Calvin M, Han J, Henderson W, Reed W, Simoneit BR. Lunar organic compounds: search and characterization. Science (New York, N.Y.). 167: 751-2. PMID 17781577 DOI: 10.1126/science.167.3918.751  0.68
1969 Kupchan SM, Davies AP, Barboutis SJ, Schnoes HK, Burlingame AL. Tumor inhibitors. 43. Solapalmitine and solapalmitenine, two novel alkaloid tumor inhibitors from Solanum tripartitium. The Journal of Organic Chemistry. 34: 3888-93. PMID 5357530 DOI: 10.1021/jo01264a031  0.56
1969 Kupchan SM, Aynehchi Y, Cassady JM, Schnoes HK, Burlingame AL. Tumor inhibitors XL. The isolation and structural elucidation of elephantin and elephantopin, two novel sesquiterpenoid tumor inhibitors from Elephantopus elatus. The Journal of Organic Chemistry. 34: 3867-75. PMID 5357527 DOI: 10.1021/jo01264a028  0.56
1969 Kupchan SM, Anderson WK, Bollinger P, Doskotch RW, Smith RM, Renauld JA, Schnoes HK, Burlingame AL, Smith DH. Tumor inhibitors. XXXIX. Active principles of Acnistus arborescens. Isolation and structural and spectral studies of withaferin A and withacnistin. The Journal of Organic Chemistry. 34: 3858-66. PMID 5357526 DOI: 10.1021/jo01264a027  0.56
1968 Schnoes HK, Smith DH, Burlingame AL, Jeffs PW, Döpke W. Mass spectra of amaryllidaceae alkaloids. The lycorenine series Tetrahedron. 24: 2825-2837.  0.56
1967 Kupchan SM, Davies AP, Barboutis SJ, Schnoes HK, Burlingame AL. The isolation, structural elucidation, and synthesis of solapalmitine and solapalmitenine, two novel alkaloid tumor inhibitors from Solanum tripartitum. Journal of the American Chemical Society. 89: 5718-9. PMID 5622365 DOI: 10.1021/ja00998a048  0.56
1967 Döpke W, Bienert M, Burlingame AL, Schnoes HK, Jeffs PW, Farrier DS. Structures and stereochemistry of clivonine and clivimine. Tetrahedron Letters. 8: 451-457.  0.56
1966 Urey HC, Lewis JS, Burlingame AL, Schnoes HK, Studier MH, Hayatsu R, Anders E. Organic matter in carbonaceous chondrites. Science (New York, N.Y.). 152: 102-7. PMID 17830238 DOI: 10.1126/science.152.3718.102  0.56
1964 Eglinton G, Scott PM, Belsky T, Burlingame AL, Calvin M. Hydrocarbons of Biological Origin from a One-Billion-Year-Old Sediment. Science (New York, N.Y.). 145: 263-4. PMID 17833034 DOI: 10.1126/science.145.3629.263  0.68
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