Joshua J. Coon - Publications

Affiliations: 
Chemistry University of Wisconsin, Madison, Madison, WI 
Area:
Bioanalytical Chemistry, Mass Spectrometry & Proteomics
Website:
http://www.chem.wisc.edu/users/jcoon

224 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Riley NM, Hebert AS, Westphall MS, Coon JJ. Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis. Nature Communications. 10: 1311. PMID 30899004 DOI: 10.1038/s41467-019-09222-w  0.92
2019 Myers KS, Riley NM, MacGilvray ME, Sato TK, McGee M, Heilberger J, Coon JJ, Gasch AP. Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeast. Plos Genetics. 15: e1008037. PMID 30856163 DOI: 10.1371/journal.pgen.1008037  0.68
2019 Denu RA, Sass MM, Johnson JM, Potts GK, Choudhary A, Coon JJ, Burkard ME. Polo-like kinase 4 maintains centriolar satellite integrity by phosphorylation of centrosomal protein 131 (CEP131). The Journal of Biological Chemistry. PMID 30804208 DOI: 10.1074/jbc.RA118.004867  0.32
2019 Martien JI, Hebert AS, Stevenson DM, Regner MR, Khana DB, Coon JJ, Amador-Noguez D. Systems-Level Analysis of Oxygen Exposure in : Implications for Isoprenoid Production. Msystems. 4. PMID 30801024 DOI: 10.1128/mSystems.00284-18  0.92
2019 Hutchins PD, Russell JD, Coon JJ. Mapping Lipid Fragmentation for Tailored Mass Spectral Libraries. Journal of the American Society For Mass Spectrometry. PMID 30756325 DOI: 10.1007/s13361-018-02125-y  0.88
2019 McKetney J, Runde R, Hebert AS, Salamat S, Roy S, Coon JJ. Proteomic atlas of the human brain in Alzheimer's disease. Journal of Proteome Research. PMID 30735395 DOI: 10.1021/acs.jproteome.9b00004  0.92
2019 Strekalova E, Malin D, Weisenhorn EMM, Russell JD, Hoelper D, Jain A, Coon JJ, Lewis PW, Cryns VL. S-adenosylmethionine biosynthesis is a targetable metabolic vulnerability of cancer stem cells. Breast Cancer Research and Treatment. PMID 30712196 DOI: 10.1007/s10549-019-05146-7  0.88
2019 Subramanian K, Jochem A, Le Vasseur M, Lewis S, Paulson BR, Reddy TR, Russell JD, Coon JJ, Pagliarini DJ, Nunnari J. Coenzyme Q biosynthetic proteins assemble in a substrate-dependent manner into domains at ER-mitochondria contacts. The Journal of Cell Biology. PMID 30674579 DOI: 10.1083/jcb.201808044  0.88
2019 Lohman DC, Aydin D, Von Bank HC, Smith RW, Linke V, Weisenhorn E, McDevitt MT, Hutchins P, Wilkerson EM, Wancewicz B, Russell J, Stefely MS, Beebe ET, Jochem A, Coon JJ, et al. An Isoprene Lipid-Binding Protein Promotes Eukaryotic Coenzyme Q Biosynthesis. Molecular Cell. PMID 30661980 DOI: 10.1016/j.molcel.2018.11.033  0.68
2018 Ghosh IN, Martien J, Hebert AS, Zhang Y, Coon JJ, Amador-Noguez D, Landick R. OptSSeq explores enzyme expression and function landscapes to maximize isobutanol production rate. Metabolic Engineering. PMID 30594629 DOI: 10.1016/j.ymben.2018.12.008  0.92
2018 Peuchen EH, Cox OF, Sun L, Hebert AS, Coon JJ, Champion MM, Dovichi NJ, Huber PW. Author Correction: Phosphorylation Dynamics Dominate the Regulated Proteome during Early Xenopus Development. Scientific Reports. 8: 17393. PMID 30459361 DOI: 10.1038/s41598-018-35442-z  0.92
2018 Shishkova E, Hebert AS, Westphall MS, Coon JJ. Ultra-High Pressure (>30,000 psi) Packing of Capillary Columns Enhancing Depth of Shotgun Proteomic Analyses. Analytical Chemistry. PMID 30179449 DOI: 10.1021/acs.analchem.8b02766  0.92
2018 Tanimura N, Liao R, Wilson GM, Dent MR, Cao M, Burstyn JN, Hematti P, Liu X, Zhang Y, Zheng Y, Keles S, Xu J, Coon JJ, Bresnick EH. GATA/Heme Multi-omics Reveals a Trace Metal-Dependent Cellular Differentiation Mechanism. Developmental Cell. PMID 30122630 DOI: 10.1016/j.devcel.2018.07.022  0.48
2018 Ho YH, Shishkova E, Hose J, Coon JJ, Gasch AP. Decoupling Yeast Cell Division and Stress Defense Implicates mRNA Repression in Translational Reallocation during Stress. Current Biology : Cb. PMID 30078561 DOI: 10.1016/j.cub.2018.06.044  0.64
2018 Hebert AS, Prasad S, Belford MW, Bailey DJ, McAlister GC, Abbatiello SE, Huguet R, Wouters ER, Dunyach JJ, Brademan DR, Westphall MS, Coon JJ. Rapid and Comprehensive Single Shot Proteomics with LC-FAIMS-MS/MS. Analytical Chemistry. PMID 29969236 DOI: 10.1021/acs.analchem.8b02233  0.96
2018 Rush MJP, Riley NM, Westphall MS, Coon JJ. Top-Down Characterization of Proteins with Intact Disulfide Bonds Using Activated-Ion Electron Transfer Dissociation. Analytical Chemistry. PMID 29949341 DOI: 10.1021/acs.analchem.8b01113  0.92
2018 Riley NM, Sikora JW, Seckler HS, Greer JB, Fellers RT, LeDuc RD, Westphall MS, Thomas PM, Kelleher NL, Coon JJ. The Value of Activated Ion Electron Transfer Dissociation for High-Throughput Top-Down Characterization of Intact Proteins. Analytical Chemistry. PMID 29924586 DOI: 10.1021/acs.analchem.8b01638  0.92
2018 Jha P, McDevitt MT, Gupta R, Quiros PM, Williams EG, Gariani K, Sleiman MB, Diserens L, Jochem A, Ulbrich A, Coon JJ, Auwerx J, Pagliarini DJ. Systems Analyses Reveal Physiological Roles and Genetic Regulators of Liver Lipid Species. Cell Systems. PMID 29909277 DOI: 10.1016/j.cels.2018.05.016  0.72
2018 Jha P, McDevitt MT, Halilbasic E, Williams EG, Quiros PM, Gariani K, Sleiman MB, Gupta R, Ulbrich A, Jochem A, Coon JJ, Trauner M, Pagliarini DJ, Auwerx J. Genetic Regulation of Plasma Lipid Species and Their Association with Metabolic Phenotypes. Cell Systems. PMID 29909275 DOI: 10.1016/j.cels.2018.05.009  0.72
2018 Yang S, Vera JM, Grass J, Savvakis G, Moskvin OV, Yang Y, McIlwain SJ, Lyu Y, Zinonos I, Hebert AS, Coon JJ, Bates DM, Sato TK, Brown SD, Himmel ME, et al. Complete genome sequence and the expression pattern of plasmids of the model ethanologen ZM4 and its xylose-utilizing derivatives 8b and 2032. Biotechnology For Biofuels. 11: 125. PMID 29743953 DOI: 10.1186/s13068-018-1116-x  0.92
2018 MacGilvray ME, Shishkova E, Chasman D, Place M, Gitter A, Coon JJ, Gasch AP. Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response. Plos Computational Biology. 13: e1006088. PMID 29738528 DOI: 10.1371/journal.pcbi.1006088  0.64
2018 Esnault S, Hebert AS, Jarjour NN, Coon JJ, Mosher DF. Proteomic and Phospho-proteomic Changes Induced by Prolonged Activation of Human Eosinophils with IL-3. Journal of Proteome Research. PMID 29706072 DOI: 10.1021/acs.jproteome.8b00057  0.92
2018 Hutchins PD, Russell JD, Coon JJ. LipiDex: An Integrated Software Package for High-Confidence Lipid Identification. Cell Systems. PMID 29705063 DOI: 10.1016/j.cels.2018.03.011  0.88
2018 Turton KB, Wilkerson EM, Hebert AS, Fogerty FJ, Schira HM, Botros FE, Coon JJ, Mosher DF. Expression of novel "LOCGEF" isoforms of ARHGEF18 in eosinophils. Journal of Leukocyte Biology. PMID 29601110 DOI: 10.1002/JLB.2MA1017-418RR  0.92
2018 Rhoads TW, Burhans MS, Chen VB, Hutchins PD, Rush MJP, Clark JP, Stark JL, McIlwain SJ, Eghbalnia HR, Pavelec DM, Ong IM, Denu JM, Markley JL, Coon JJ, Colman RJ, et al. Caloric Restriction Engages Hepatic RNA Processing Mechanisms in Rhesus Monkeys. Cell Metabolism. 27: 677-688.e5. PMID 29514073 DOI: 10.1016/j.cmet.2018.01.014  0.72
2018 Mitok KA, Freiberger EC, Schueler KL, Rabaglia ME, Stapleton DS, Kwiecien NW, Malec PA, Hebert AS, Broman AT, Kennedy RT, Keller MP, Coon JJ, Attie AD. Islet proteomics reveals genetic variation in dopamine production resulting in altered insulin secretion. The Journal of Biological Chemistry. PMID 29496998 DOI: 10.1074/jbc.RA117.001102  0.92
2018 Kontur WS, Bingman CA, Olmsted CN, Wassarman DR, Ulbrich A, Gall DL, Smith RW, Yusko LM, Fox BG, Noguera DR, Coon JJ, Donohue TJ. uses a Nu-class glutathione-S-transferase as a glutathione lyase in breaking the β-aryl ether bond of lignin. The Journal of Biological Chemistry. PMID 29449375 DOI: 10.1074/jbc.RA117.001268  0.72
2018 Bottoms S, Dickinson Q, McGee M, Hinchman L, Higbee A, Hebert A, Serate J, Xie D, Zhang Y, Coon JJ, Myers CL, Landick R, Piotrowski JS. Chemical genomic guided engineering of gamma-valerolactone tolerant yeast. Microbial Cell Factories. 17: 5. PMID 29329531 DOI: 10.1186/s12934-017-0848-9  0.48
2018 Overmyer KA, Tyanova S, Hebert AS, Westphall MS, Cox J, Coon JJ. Multiplexed proteome analysis with neutron-encoded stable isotope labeling in cells and mice. Nature Protocols. 13: 293-306. PMID 29323663 DOI: 10.1038/nprot.2017.121  0.92
2018 Lee JH, Mand MR, Kao CH, Zhou Y, Ryu SW, Richards AL, Coon JJ, Paull TT. ATM directs DNA damage responses and proteostasis via genetically separable pathways. Science Signaling. 11. PMID 29317520 DOI: 10.1126/scisignal.aan5598  0.48
2017 Hebert AS, Thoeing C, Riley NM, Kwiecien NW, Shiskova E, Huguet R, Cardasis HL, Kuehn A, Eliuk S, Zabrouskov V, Westphall MS, McAlister GC, Coon JJ. Improved Precursor Characterization for Data-Dependent Mass Spectrometry. Analytical Chemistry. PMID 29272103 DOI: 10.1021/acs.analchem.7b04808  0.92
2017 Lapointe CP, Stefely JA, Jochem A, Hutchins PD, Wilson GM, Kwiecien NW, Coon JJ, Wickens M, Pagliarini DJ. Multi-omics Reveal Specific Targets of the RNA-Binding Protein Puf3p and Its Orchestration of Mitochondrial Biogenesis. Cell Systems. PMID 29248374 DOI: 10.1016/j.cels.2017.11.012  0.72
2017 Veling MT, Reidenbach AG, Freiberger EC, Kwiecien NW, Hutchins PD, Drahnak MJ, Jochem A, Ulbrich A, Rush MJP, Russell JD, Coon JJ, Pagliarini DJ. Multi-omic Mitoprotease Profiling Defines a Role for Oct1p in Coenzyme Q Production. Molecular Cell. 68: 970-977.e11. PMID 29220658 DOI: 10.1016/j.molcel.2017.11.023  0.88
2017 Vakirlis NN, Hebert AS, Opulente DA, Achaz G, Hittinger CT, Fischer G, Coon JJ, Lafontaine I. A molecular portrait of de novo genes in yeasts. Molecular Biology and Evolution. PMID 29220506 DOI: 10.1093/molbev/msx315  0.92
2017 Reidenbach AG, Kemmerer ZA, Aydin D, Jochem A, McDevitt MT, Hutchins PD, Stark JL, Stefely JA, Reddy T, Hebert AS, Wilkerson EM, Johnson IE, Bingman CA, Markley JL, Coon JJ, et al. Conserved Lipid and Small-Molecule Modulation of COQ8 Reveals Regulation of the Ancient Kinase-like UbiB Family. Cell Chemical Biology. PMID 29198567 DOI: 10.1016/j.chembiol.2017.11.001  0.92
2017 Riley NM, Coon JJ. The Role of Electron Transfer Dissociation in Modern Proteomics. Analytical Chemistry. PMID 29172454 DOI: 10.1021/acs.analchem.7b04810  0.68
2017 Peuchen EH, Cox OF, Sun L, Hebert AS, Coon JJ, Champion MM, Dovichi NJ, Huber PW. Phosphorylation Dynamics Dominate the Regulated Proteome during Early Xenopus Development. Scientific Reports. 7: 15647. PMID 29142207 DOI: 10.1038/s41598-017-15936-y  0.92
2017 Velsko IM, Overmyer KA, Speller C, Klaus L, Collins MJ, Loe L, Frantz LAF, Sankaranarayanan K, Lewis CM, Martinez JBR, Chaves E, Coon JJ, Larson G, Warinner C. The dental calculus metabolome in modern and historic samples. Metabolomics : Official Journal of the Metabolomic Society. 13: 134. PMID 29046620 DOI: 10.1007/s11306-017-1270-3  0.4
2017 Mosher DF, Wilkerson EM, Turton KB, Hebert AS, Coon JJ. Proteomics of Eosinophil Activation. Frontiers in Medicine. 4: 159. PMID 29034237 DOI: 10.3389/fmed.2017.00159  0.92
2017 Riley NM, Westphall MS, Coon JJ. Sequencing Larger Intact Proteins (30-70 kDa) with Activated Ion Electron Transfer Dissociation. Journal of the American Society For Mass Spectrometry. PMID 29027149 DOI: 10.1007/s13361-017-1808-7  0.92
2017 Shishkova E, Kwiecien NW, Hebert AS, Westphall MS, Prenni JE, Coon JJ. Gender Diversity in a STEM Subfield - Analysis of a Large Scientific Society and Its Annual Conferences. Journal of the American Society For Mass Spectrometry. PMID 28952050 DOI: 10.1007/s13361-017-1803-z  0.92
2017 Diaz JE, Morgan CW, Minogue CE, Hebert AS, Coon JJ, Wells JA. A Split-Abl Kinase for Direct Activation in Cells. Cell Chemical Biology. PMID 28919041 DOI: 10.1016/j.chembiol.2017.08.007  0.92
2017 Hewitt KJ, Katsumura KR, Matson DR, Devadas P, Tanimura N, Hebert AS, Coon JJ, Kim JS, Dewey CN, Keles S, Hao S, Paulson RF, Bresnick EH. GATA Factor-Regulated Samd14 Enhancer Confers Red Blood Cell Regeneration and Survival in Severe Anemia. Developmental Cell. 42: 213-225.e4. PMID 28787589 DOI: 10.1016/j.devcel.2017.07.009  0.92
2017 Mondal A, Dawson AR, Potts GK, Freiberger EC, Baker SF, Moser LA, Bernard KA, Coon JJ, Mehle A. Influenza virus recruits host protein kinase C to control assembly and activity of its replication machinery. Elife. 6. PMID 28758638 DOI: 10.7554/eLife.26910  0.32
2017 Riley NM, Westphall MS, Coon JJ. Activated Ion Electron Transfer Dissociation Enables Comprehen-sive Top-Down Protein Fragmentation. Journal of Proteome Research. PMID 28608681 DOI: 10.1021/acs.jproteome.7b00249  0.92
2017 Leach FE, Riley NM, Westphall MS, Coon JJ, Amster IJ. Negative Electron Transfer Dissociation Sequencing of Increasingly Sulfated Glycosaminoglycan Oligosaccharides on an Orbitrap Mass Spectrometer. Journal of the American Society For Mass Spectrometry. PMID 28589488 DOI: 10.1007/s13361-017-1709-9  0.92
2017 Chung J, Wittig JG, Ghamari A, Maeda M, Dailey TA, Bergonia H, Kafina MD, Coughlin EE, Minogue CE, Hebert AS, Li L, Kaplan J, Lodish HF, Bauer DE, Orkin SH, ... ... Coon JJ, et al. Erythropoietin signaling regulates heme biosynthesis. Elife. 6. PMID 28553927 DOI: 10.7554/eLife.24767  0.92
2017 Potts GK, McNally RM, Blanco R, You JS, Hebert AS, Westphall MS, Coon JJ, Hornberger TA. A map of the phosphoproteomic alterations that occur after a bout of maximal-intensity contractions. The Journal of Physiology. PMID 28542873 DOI: 10.1113/JP273904  0.92
2017 Guo X, Niemi NM, Coon JJ, Pagliarini DJ. Integrative proteomics and biochemical analyses define Ptc6p as the Saccharomyces cerevisiae pyruvate dehydrogenase phosphatase. The Journal of Biological Chemistry. PMID 28539364 DOI: 10.1074/jbc.M117.787341  0.68
2017 Shishkova E, Zeng H, Liu F, Kwiecien NW, Hebert AS, Coon JJ, Xu W. Global mapping of CARM1 substrates defines enzyme specificity and substrate recognition. Nature Communications. 8: 15571. PMID 28537268 DOI: 10.1038/ncomms15571  0.92
2017 Riley NM, Hebert AS, Dürnberger G, Stanek F, Mechtler K, Westphall MS, Coon JJ. Phosphoproteomics with Activated Ion Electron Transfer Dissociation. Analytical Chemistry. PMID 28383256 DOI: 10.1021/acs.analchem.7b00212  0.92
2017 Riley NM, Westphall MS, Hebert AS, Coon JJ. Implementation of Activated Ion Electron Transfer Dissociation on a quadrupole-Orbitrap-linear ion trap hybrid mass spectrometer. Analytical Chemistry. PMID 28383247 DOI: 10.1021/acs.analchem.7b00213  0.92
2017 Rush MJ, Riley NM, Westphall MS, Syka JE, Coon JJ. Sulfur Pentafluoride is a Preferred Reagent Cation for Negative Electron Transfer Dissociation. Journal of the American Society For Mass Spectrometry. PMID 28349437 DOI: 10.1007/s13361-017-1600-8  0.92
2017 Jayaraman D, Richards AL, Westphall MS, Coon JJ, Ané JM. Identification of the phosphorylation targets of symbiotic receptor-like kinases using a high-throughput multiplexed assay for kinase specificity. The Plant Journal : For Cell and Molecular Biology. PMID 28267253 DOI: 10.1111/tpj.13529  0.92
2017 Guo X, Niemi NM, Hutchins PD, Condon SG, Jochem A, Ulbrich A, Higbee AJ, Russell JD, Senes A, Coon JJ, Pagliarini DJ. Ptc7p Dephosphorylates Select Mitochondrial Proteins to Enhance Metabolic Function. Cell Reports. 18: 307-313. PMID 28076776 DOI: 10.1016/j.celrep.2016.12.049  0.88
2016 Sato TK, Tremaine M, Parreiras LS, Hebert AS, Myers KS, Higbee AJ, Sardi M, McIlwain SJ, Ong IM, Breuer RJ, Narasimhan RA, McGee MA, Dickinson Q, La Reau A, Xie D, ... ... Coon JJ, et al. Correction: Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae. Plos Genetics. 12: e1006447. PMID 27828955 DOI: 10.1371/journal.pgen.1006447  0.92
2016 Ong RG, Higbee A, Bottoms S, Dickinson Q, Xie D, Smith SA, Serate J, Pohlmann E, Jones AD, Coon JJ, Sato TK, Sanford GR, Eilert D, Oates LG, Piotrowski JS, et al. Inhibition of microbial biofuel production in drought-stressed switchgrass hydrolysate. Biotechnology For Biofuels. 9: 237. PMID 27826356 DOI: 10.1186/s13068-016-0657-0  0.48
2016 Shishkova E, Hebert AS, Coon JJ. Now, More Than Ever, Proteomics Needs Better Chromatography. Cell Systems. 3: 321-324. PMID 27788355 DOI: 10.1016/j.cels.2016.10.007  0.92
2016 Weisenhorn EM, Van't Erve TJ, Riley NM, Hess JR, Raife TJ, Coon JJ. Multi-omics evidence for inheritance of energy pathways in red blood cells. Molecular & Cellular Proteomics : McP. PMID 27777340 DOI: 10.1074/mcp.M116.062349  0.68
2016 Marx H, Minogue CE, Jayaraman D, Richards AL, Kwiecien NW, Sihapirani AF, Rajasekar S, Maeda J, Garcia K, Del Valle-Echevarria AR, Volkening JD, Westphall MS, Roy S, Sussman MR, Ané JM, ... Coon JJ, et al. A proteomic atlas of the legume Medicago truncatula and its nitrogen-fixing endosymbiont Sinorhizobium meliloti. Nature Biotechnology. PMID 27748755 DOI: 10.1038/nbt.3681  0.92
2016 Sato TK, Tremaine M, Parreiras LS, Hebert AS, Myers KS, Higbee AJ, Sardi M, McIlwain SJ, Ong IM, Breuer RJ, Avanasi Narasimhan R, McGee MA, Dickinson Q, La Reau A, Xie D, ... ... Coon JJ, et al. Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae. Plos Genetics. 12: e1006372. PMID 27741250 DOI: 10.1371/journal.pgen.1006372  0.92
2016 Kuang MC, Hutchins PD, Russell JD, Coon JJ, Hittinger CT. Ongoing resolution of duplicate gene functions shapes the diversification of a metabolic network. Elife. 5. PMID 27690225 DOI: 10.7554/eLife.19027  0.88
2016 Stefely JA, Kwiecien NW, Freiberger EC, Richards AL, Jochem A, Rush MJ, Ulbrich A, Robinson KP, Hutchins PD, Veling MT, Guo X, Kemmerer ZA, Connors KJ, Trujillo EA, Sokol J, ... ... Coon JJ, et al. Mitochondrial protein functions elucidated by multi-omic mass spectrometry profiling. Nature Biotechnology. PMID 27669165 DOI: 10.1038/nbt.3683  0.92
2016 Floyd BJ, Wilkerson EM, Veling MT, Minogue CE, Xia C, Beebe ET, Wrobel RL, Cho H, Kremer LS, Alston CL, Gromek KA, Dolan BK, Ulbrich A, Stefely JA, Bohl SL, ... ... Coon JJ, et al. Mitochondrial Protein Interaction Mapping Identifies Regulators of Respiratory Chain Function. Molecular Cell. PMID 27499296 DOI: 10.1016/j.molcel.2016.06.033  0.92
2016 Stefely JA, Licitra F, Laredj L, Reidenbach AG, Kemmerer ZA, Grangeray A, Jaeg-Ehret T, Minogue CE, Ulbrich A, Hutchins PD, Wilkerson EM, Ruan Z, Aydin D, Hebert AS, Guo X, ... ... Coon JJ, et al. Cerebellar Ataxia and Coenzyme Q Deficiency through Loss of Unorthodox Kinase Activity. Molecular Cell. PMID 27499294 DOI: 10.1016/j.molcel.2016.06.030  0.92
2016 Xue L, Blythe EE, Freiberger EC, Mamrosh J, Hebert AS, Reitsma JM, Hess S, Coon JJ, Deshaies RJ. VCP-adaptor interactions are exceptionally dynamic and subject to differential modulation by a VCP inhibitor. Molecular & Cellular Proteomics : McP. PMID 27406709 DOI: 10.1074/mcp.M116.061036  0.32
2016 Riley NM, Bern M, Westphall MS, Coon JJ. A full-featured search algorithm for negative electron transfer dissociation. Journal of Proteome Research. PMID 27402189 DOI: 10.1021/acs.jproteome.6b00319  0.96
2016 Baughman JM, Rose CM, Kolumam G, Webster JD, Wilkerson EM, Merrill AE, Rhoads TW, Noubade R, Katavolos P, Lesch J, Stapleton DS, Rabaglia ME, Schueler KL, Asuncion R, Domeyer M, ... ... Coon JJ, et al. NeuCode Proteomics Reveals Bap1 Regulation of Metabolism. Cell Reports. 16: 583-595. PMID 27373151 DOI: 10.1016/j.celrep.2016.05.096  0.92
2016 McIlwain SJ, Peris D, Sardi M, Moskvin OV, Zhan F, Myers KS, Riley NM, Buzzell A, Parreiras LS, Ong IM, Landick R, Coon JJ, Gasch AP, Sato TK, Hittinger CT. Genome Sequence and Analysis of a Stress-Tolerant, Wild-Derived Strain of Saccharomyces cerevisiae Used in Biofuels Research. G3 (Bethesda, Md.). 6: 1757-66. PMID 27172212 DOI: 10.1534/g3.116.029389  0.32
2016 Riley NM, Hebert AS, Coon JJ. Proteomics Moves into the Fast Lane. Cell Systems. 2: 142-143. PMID 27135360 DOI: 10.1016/j.cels.2016.03.002  0.96
2016 Lera RF, Potts GK, Suzuki A, Johnson JM, Salmon ED, Coon JJ, Burkard ME. Decoding Polo-like kinase 1 signaling along the kinetochore-centromere axis. Nature Chemical Biology. PMID 27043190 DOI: 10.1038/nchembio.2060  0.32
2016 Wilkerson EM, Johansson MW, Hebert AS, Westphall MS, Mathur SK, Jarjour NN, Schwantes EA, Mosher D, Coon JJ. The peripheral blood eosinophil proteome. Journal of Proteome Research. PMID 27005946 DOI: 10.1021/acs.jproteome.6b00006  0.92
2016 Horton JL, Martin OJ, Lai L, Riley NM, Richards AL, Vega RB, Leone TC, Pagliarini DJ, Muoio DM, Bedi KC, Margulies KB, Coon JJ, Kelly DP. Mitochondrial protein hyperacetylation in the failing heart. Jci Insight. 2. PMID 26998524 DOI: 10.1172/jci.insight.84897  0.68
2016 Potts GK, Voigt EA, Bailey DJ, Rose CM, Westphall MS, Hebert AS, Yin J, Coon JJ. NEUCODE LABELS FOR MULTIPLEXED, ABSOLUTE PROTEIN QUANTIFICATION. Analytical Chemistry. PMID 26882330 DOI: 10.1021/acs.analchem.5b04773  0.96
2016 Dickinson Q, Bottoms S, Hinchman L, McIlwain S, Li S, Myers CL, Boone C, Coon JJ, Hebert A, Sato TK, Landick R, Piotrowski JS. Mechanism of imidazolium ionic liquids toxicity in Saccharomyces cerevisiae and rational engineering of a tolerant, xylose-fermenting strain. Microbial Cell Factories. 15: 17. PMID 26790958 DOI: 10.1186/s12934-016-0417-7  0.96
2015 Riley NM, Mullen C, Weisbrod CR, Sharma S, Senko MW, Zabrouskov V, Westphall MS, Syka JE, Coon JJ. Enhanced Dissociation of Intact Proteins with High Capacity Electron Transfer Dissociation. Journal of the American Society For Mass Spectrometry. PMID 26589699 DOI: 10.1007/s13361-015-1306-8  0.96
2015 Riley NM, Coon JJ. Phosphoproteomics in the Age of Rapid and Deep Proteome Profiling. Analytical Chemistry. PMID 26539879 DOI: 10.1021/acs.analchem.5b04123  0.96
2015 Rhoads TW, Prasad A, Kwiecien NW, Merrill AE, Zawack K, Westphall MS, Schroeder FC, Kimble J, Coon JJ. NeuCode Labeling in Nematodes: Proteomic and Phosphoproteomic Impact of Ascaroside Treatment in Caenorhabditis elegans. Molecular & Cellular Proteomics : McP. 14: 2922-35. PMID 26392051 DOI: 10.1074/mcp.M115.049684  0.96
2015 Huang M, Hebert AS, Coon JJ, Hull CM. Protein Composition of Infectious Spores Reveals Novel Sexual Development and Germination Factors in Cryptococcus. Plos Genetics. 11: e1005490. PMID 26313153 DOI: 10.1371/journal.pgen.1005490  0.32
2015 Annis DS, Ma H, Balas DM, Kumfer KT, Sandbo N, Potts GK, Coon JJ, Mosher DF. Absence of Vitamin K-Dependent γ-Carboxylation in Human Periostin Extracted from Fibrotic Lung or Secreted from a Cell Line Engineered to Optimize γ-Carboxylation. Plos One. 10: e0135374. PMID 26273833 DOI: 10.1371/journal.pone.0135374  0.32
2015 Venkateshwaran M, Jayaraman D, Chabaud M, Genre A, Balloon AJ, Maeda J, Forshey K, den Os D, Kwiecien NW, Coon JJ, Barker DG, Ané JM. A role for the mevalonate pathway in early plant symbiotic signaling. Proceedings of the National Academy of Sciences of the United States of America. 112: 9781-6. PMID 26199419 DOI: 10.1073/pnas.1413762112  0.36
2015 Riley NM, Rush MJ, Rose CM, Richards AL, Kwiecien NW, Bailey DJ, Hebert AS, Westphall MS, Coon JJ. The Negative Mode Proteome with Activated Ion Negative Electron Transfer Dissociation (AI-NETD). Molecular & Cellular Proteomics : McP. 14: 2644-60. PMID 26193884 DOI: 10.1074/mcp.M115.049726  0.96
2015 Kwiecien NW, Bailey DJ, Rush MJ, Cole JS, Ulbrich A, Hebert AS, Westphall MS, Coon JJ. High-Resolution Filtering for Improved Small Molecule Identification via GC/MS. Analytical Chemistry. 87: 8328-35. PMID 26192401 DOI: 10.1021/acs.analchem.5b01503  0.96
2015 Nguyen TT, Volkening JD, Rose CM, Venkateshwaran M, Westphall MS, Coon JJ, Ané JM, Sussman MR. Potential regulatory phosphorylation sites in a Medicago truncatula plasma membrane proton pump implicated during early symbiotic signaling in roots. Febs Letters. 589: 2186-93. PMID 26188545 DOI: 10.1016/j.febslet.2015.06.035  0.96
2015 Austin S, Kontur WS, Ulbrich A, Oshlag JZ, Zhang W, Higbee A, Zhang Y, Coon JJ, Hodge DB, Donohue TJ, Noguera DR. Metabolism of multiple aromatic compounds in corn stover hydrolysate by Rhodopseudomonas palustris. Environmental Science & Technology. PMID 26121369 DOI: 10.1021/acs.est.5b02062  0.96
2015 Rose CM, Rush MJ, Riley NM, Merrill AE, Kwiecien NW, Holden DD, Mullen C, Westphall MS, Coon JJ. A Calibration Routine for Efficient ETD in Large-Scale Proteomics. Journal of the American Society For Mass Spectrometry. PMID 26111518 DOI: 10.1007/s13361-015-1183-1  0.96
2015 Tagliabracci VS, Wiley SE, Guo X, Kinch LN, Durrant E, Wen J, Xiao J, Cui J, Nguyen KB, Engel JL, Coon JJ, Grishin N, Pinna LA, Pagliarini DJ, Dixon JE. A Single Kinase Generates the Majority of the Secreted Phosphoproteome. Cell. 161: 1619-32. PMID 26091039 DOI: 10.1016/j.cell.2015.05.028  0.96
2015 Riley NM, Westphall MS, Coon JJ. Activated Ion Electron Transfer Dissociation for Improved Fragmentation of Intact Proteins. Analytical Chemistry. PMID 26067513 DOI: 10.1021/acs.analchem.5b00881  0.96
2015 Waghray S, Williams C, Coon JJ, Wickens M. Xenopus CAF1 requires NOT1-mediated interaction with 4E-T to repress translation in vivo. Rna (New York, N.Y.). 21: 1335-45. PMID 26015597 DOI: 10.1261/rna.051565.115  0.96
2015 Nguyen HT, Shaffer CJ, Ledvina AR, Coon JJ, Ture?ek F. Serine effects on collision-induced dissociation and photodissociation of peptide cation radicals of the z (+•) -type. International Journal of Mass Spectrometry. 378: 20-30. PMID 26005367 DOI: 10.1016/j.ijms.2014.06.028  0.36
2015 Zhao Y, Riley NM, Sun L, Hebert AS, Yan X, Westphall MS, Rush MJ, Zhu G, Champion MM, Mba Medie F, Champion PA, Coon JJ, Dovichi NJ. Coupling capillary zone electrophoresis with electron transfer dissociation and activated ion electron transfer dissociation for top-down proteomics. Analytical Chemistry. 87: 5422-9. PMID 25893372 DOI: 10.1021/acs.analchem.5b00883  0.96
2015 Mondal A, Potts GK, Dawson AR, Coon JJ, Mehle A. Phosphorylation at the homotypic interface regulates nucleoprotein oligomerization and assembly of the influenza virus replication machinery. Plos Pathogens. 11: e1004826. PMID 25867750 DOI: 10.1371/journal.ppat.1004826  0.96
2015 Dittenhafer-Reed KE, Richards AL, Fan J, Smallegan MJ, Fotuhi Siahpirani A, Kemmerer ZA, Prolla TA, Roy S, Coon JJ, Denu JM. SIRT3 mediates multi-tissue coupling for metabolic fuel switching. Cell Metabolism. 21: 637-46. PMID 25863253 DOI: 10.1016/j.cmet.2015.03.007  0.96
2015 Richards AL, Hebert AS, Ulbrich A, Bailey DJ, Coughlin EE, Westphall MS, Coon JJ. One-hour proteome analysis in yeast. Nature Protocols. 10: 701-14. PMID 25855955 DOI: 10.1038/nprot.2015.040  0.96
2015 Ledvina AR, Coon JJ, Ture?ek F. Competitive Hydrogen Atom Migrations Accompanying Cascade Dissociations of Peptide Cation-Radicals of the z (+•) Type. International Journal of Mass Spectrometry. 377: 44-53. PMID 25844055 DOI: 10.1016/j.ijms.2014.02.015  0.96
2015 Lippmann ES, Williams CE, Ruhl DA, Estevez-Silva MC, Chapman ER, Coon JJ, Ashton RS. Deterministic HOX patterning in human pluripotent stem cell-derived neuroectoderm. Stem Cell Reports. 4: 632-44. PMID 25843047 DOI: 10.1016/j.stemcr.2015.02.018  0.96
2015 Piotrowski JS, Okada H, Lu F, Li SC, Hinchman L, Ranjan A, Smith DL, Higbee AJ, Ulbrich A, Coon JJ, Deshpande R, Bukhman YV, McIlwain S, Ong IM, Myers CL, et al. Plant-derived antifungal agent poacic acid targets β-1,3-glucan. Proceedings of the National Academy of Sciences of the United States of America. 112: E1490-7. PMID 25775513 DOI: 10.1073/pnas.1410400112  0.96
2015 Overmyer KA, Evans CR, Qi NR, Minogue CE, Carson JJ, Chermside-Scabbo CJ, Koch LG, Britton SL, Pagliarini DJ, Coon JJ, Burant CF. Maximal oxidative capacity during exercise is associated with skeletal muscle fuel selection and dynamic changes in mitochondrial protein acetylation. Cell Metabolism. 21: 468-78. PMID 25738461 DOI: 10.1016/j.cmet.2015.02.007  0.96
2015 Minogue CE, Hebert AS, Rensvold JW, Westphall MS, Pagliarini DJ, Coon JJ. Multiplexed quantification for data-independent acquisition. Analytical Chemistry. 87: 2570-5. PMID 25621425 DOI: 10.1021/ac503593d  0.96
2015 Stefely JA, Reidenbach AG, Ulbrich A, Oruganty K, Floyd BJ, Jochem A, Saunders JM, Johnson IE, Minogue CE, Wrobel RL, Barber GE, Lee D, Li S, Kannan N, Coon JJ, et al. Mitochondrial ADCK3 employs an atypical protein kinase-like fold to enable coenzyme Q biosynthesis. Molecular Cell. 57: 83-94. PMID 25498144 DOI: 10.1016/j.molcel.2014.11.002  0.96
2015 Richards AL, Merrill AE, Coon JJ. Proteome sequencing goes deep. Current Opinion in Chemical Biology. 24: 11-7. PMID 25461719 DOI: 10.1016/j.cbpa.2014.10.017  0.96
2014 Brumbaugh J, Russell JD, Yu P, Westphall MS, Coon JJ, Thomson JA. NANOG Is Multiply Phosphorylated and Directly Modified by ERK2 and CDK1 In Vitro. Stem Cell Reports. 2: 18-25. PMID 28039751 DOI: 10.1016/j.stemcr.2013.12.005  0.92
2014 Chasman D, Ho YH, Berry DB, Nemec CM, MacGilvray ME, Hose J, Merrill AE, Lee MV, Will JL, Coon JJ, Ansari AZ, Craven M, Gasch AP. Pathway connectivity and signaling coordination in the yeast stress-activated signaling network. Molecular Systems Biology. 10: 759. PMID 25411400 DOI: 10.15252/msb.20145120  0.96
2014 Rahimi A, Ulbrich A, Coon JJ, Stahl SS. Formic-acid-induced depolymerization of oxidized lignin to aromatics. Nature. 515: 249-52. PMID 25363781 DOI: 10.1038/nature13867  0.96
2014 Sun L, Hebert AS, Yan X, Zhao Y, Westphall MS, Rush MJ, Zhu G, Champion MM, Coon JJ, Dovichi NJ. Over 10,000 peptide identifications from the HeLa proteome by using single-shot capillary zone electrophoresis combined with tandem mass spectrometry. Angewandte Chemie (International Ed. in English). 53: 13931-3. PMID 25346227 DOI: 10.1002/anie.201409075  0.96
2014 Lohman DC, Forouhar F, Beebe ET, Stefely MS, Minogue CE, Ulbrich A, Stefely JA, Sukumar S, Luna-Sánchez M, Jochem A, Lew S, Seetharaman J, Xiao R, Wang H, Westphall MS, ... ... Coon JJ, et al. Mitochondrial COQ9 is a lipid-binding protein that associates with COQ7 to enable coenzyme Q biosynthesis. Proceedings of the National Academy of Sciences of the United States of America. 111: E4697-705. PMID 25339443 DOI: 10.1073/pnas.1413128111  0.96
2014 Hooper C, Jackson SS, Coughlin EE, Coon JJ, Miyamoto S. Covalent modification of the NF-κB essential modulator (NEMO) by a chemical compound can regulate its ubiquitin binding properties in vitro. The Journal of Biological Chemistry. 289: 33161-74. PMID 25296760 DOI: 10.1074/jbc.M114.582478  0.96
2014 Parreiras LS, Breuer RJ, Avanasi Narasimhan R, Higbee AJ, La Reau A, Tremaine M, Qin L, Willis LB, Bice BD, Bonfert BL, Pinhancos RC, Balloon AJ, Uppugundla N, Liu T, Li C, ... ... Coon JJ, et al. Engineering and two-stage evolution of a lignocellulosic hydrolysate-tolerant Saccharomyces cerevisiae strain for anaerobic fermentation of xylose from AFEX pretreated corn stover. Plos One. 9: e107499. PMID 25222864 DOI: 10.1371/journal.pone.0107499  0.96
2014 Peterson AC, Hauschild JP, Quarmby ST, Krumwiede D, Lange O, Lemke RA, Grosse-Coosmann F, Horning S, Donohue TJ, Westphall MS, Coon JJ, Griep-Raming J. Development of a GC/Quadrupole-Orbitrap mass spectrometer, part I: design and characterization. Analytical Chemistry. 86: 10036-43. PMID 25208235 DOI: 10.1021/ac5014767  0.96
2014 Keating DH, Zhang Y, Ong IM, McIlwain S, Morales EH, Grass JA, Tremaine M, Bothfeld W, Higbee A, Ulbrich A, Balloon AJ, Westphall MS, Aldrich J, Lipton MS, Kim J, ... ... Coon JJ, et al. Aromatic inhibitors derived from ammonia-pretreated lignocellulose hinder bacterial ethanologenesis by activating regulatory circuits controlling inhibitor efflux and detoxification. Frontiers in Microbiology. 5: 402. PMID 25177315 DOI: 10.3389/fmicb.2014.00402  0.32
2014 Peterson AC, Balloon AJ, Westphall MS, Coon JJ. Development of a GC/Quadrupole-Orbitrap mass spectrometer, part II: new approaches for discovery metabolomics. Analytical Chemistry. 86: 10044-51. PMID 25166283 DOI: 10.1021/ac5014755  0.96
2014 Kebede MA, Oler AT, Gregg T, Balloon AJ, Johnson A, Mitok K, Rabaglia M, Schueler K, Stapleton D, Thorstenson C, Wrighton L, Floyd BJ, Richards O, Raines S, Eliceiri K, ... ... Coon JL, et al. SORCS1 is necessary for normal insulin secretory granule biogenesis in metabolically stressed β cells. The Journal of Clinical Investigation. 124: 4240-56. PMID 25157818 DOI: 10.1172/JCI74072  0.64
2014 Lemke RA, Peterson AC, Ziegelhoffer EC, Westphall MS, Tjellström H, Coon JJ, Donohue TJ. Synthesis and scavenging role of furan fatty acids. Proceedings of the National Academy of Sciences of the United States of America. 111: E3450-7. PMID 25092314 DOI: 10.1073/pnas.1405520111  0.96
2014 Bhatnagar S, Soni MS, Wrighton LS, Hebert AS, Zhou AS, Paul PK, Gregg T, Rabaglia ME, Keller MP, Coon JJ, Attie AD. Phosphorylation and degradation of tomosyn-2 de-represses insulin secretion. The Journal of Biological Chemistry. 289: 25276-86. PMID 25002582 DOI: 10.1074/jbc.M114.575985  0.92
2014 Merrill AE, Hebert AS, MacGilvray ME, Rose CM, Bailey DJ, Bradley JC, Wood WW, El Masri M, Westphall MS, Gasch AP, Coon JJ. NeuCode labels for relative protein quantification. Molecular & Cellular Proteomics : McP. 13: 2503-12. PMID 24938287 DOI: 10.1074/mcp.M114.040287  0.96
2014 Ulbrich A, Bailey DJ, Westphall MS, Coon JJ. Organic acid quantitation by NeuCode methylamidation. Analytical Chemistry. 86: 4402-8. PMID 24684282 DOI: 10.1021/ac500270q  0.96
2014 Brumbaugh J, Russell JD, Yu P, Westphall MS, Coon JJ, Thomson JA. NANOG is multiply phosphorylated and directly modified by ERK2 and CDK1 in vitro. Stem Cell Reports. 2: 18-25. PMID 24678451 DOI: 10.1016/j.stemcr.2013.12.005  0.96
2014 Bailey DJ, McDevitt MT, Westphall MS, Pagliarini DJ, Coon JJ. Intelligent data acquisition blends targeted and discovery methods. Journal of Proteome Research. 13: 2152-61. PMID 24611583 DOI: 10.1021/pr401278j  0.96
2014 Zhang Y, Perez T, Blondin B, Du J, Liu P, Escarzaga D, Coon JS, Morrison LE, Pestova K. Identification of FISH biomarkers to detect chromosome abnormalities associated with prostate adenocarcinoma in tumour and field effect environment Bmc Cancer. 14. PMID 24568597 DOI: 10.1186/1471-2407-14-129  0.48
2014 Dingley SD, Polyak E, Ostrovsky J, Srinivasan S, Lee I, Rosenfeld AB, Tsukikawa M, Xiao R, Selak MA, Coon JJ, Hebert AS, Grimsrud PA, Kwon YJ, Pagliarini DJ, Gai X, et al. Mitochondrial DNA variant in COX1 subunit significantly alters energy metabolism of geographically divergent wild isolates in Caenorhabditis elegans. Journal of Molecular Biology. 426: 2199-216. PMID 24534730 DOI: 10.1016/j.jmb.2014.02.009  0.96
2014 Rhoads TW, Rose CM, Bailey DJ, Riley NM, Molden RC, Nestler AJ, Merrill AE, Smith LM, Hebert AS, Westphall MS, Pagliarini DJ, Garcia BA, Coon JJ. Neutron-encoded mass signatures for quantitative top-down proteomics. Analytical Chemistry. 86: 2314-9. PMID 24475910 DOI: 10.1021/ac403579s  0.96
2014 Honarpour N, Rose CM, Brumbaugh J, Anderson J, Graham RL, Sweredoski MJ, Hess S, Coon JJ, Deshaies RJ. F-box protein FBXL16 binds PP2A-B55α and regulates differentiation of embryonic stem cells along the FLK1+ lineage. Molecular & Cellular Proteomics : McP. 13: 780-91. PMID 24390425 DOI: 10.1074/mcp.M113.031765  0.96
2014 Ulbrich A, Merrill AE, Hebert AS, Westphall MS, Keller MP, Attie AD, Coon JJ. Neutron-encoded protein quantification by peptide carbamylation. Journal of the American Society For Mass Spectrometry. 25: 6-9. PMID 24178922 DOI: 10.1007/s13361-013-0765-z  0.92
2014 Hebert AS, Richards AL, Bailey DJ, Ulbrich A, Coughlin EE, Westphall MS, Coon JJ. The one hour yeast proteome. Molecular & Cellular Proteomics : McP. 13: 339-47. PMID 24143002 DOI: 10.1074/mcp.M113.034769  0.96
2013 Richards AL, Vincent CE, Guthals A, Rose CM, Westphall MS, Bandeira N, Coon JJ. Neutron-encoded signatures enable product ion annotation from tandem mass spectra. Molecular & Cellular Proteomics : McP. 12: 3812-23. PMID 24043425 DOI: 10.1074/mcp.M113.028951  0.96
2013 Jackson SS, Coughlin EE, Coon JJ, Miyamoto S. Identifying post-translational modifications of NEMO by tandem mass spectrometry after high affinity purification. Protein Expression and Purification. 92: 48-53. PMID 24012789 DOI: 10.1016/j.pep.2013.08.020  0.96
2013 Frey BL, Ladror DT, Sondalle SB, Krusemark CJ, Jue AL, Coon JJ, Smith LM. Chemical derivatization of peptide carboxyl groups for highly efficient electron transfer dissociation. Journal of the American Society For Mass Spectrometry. 24: 1710-21. PMID 23918461 DOI: 10.1007/s13361-013-0701-2  0.96
2013 Hebert AS, Merrill AE, Stefely JA, Bailey DJ, Wenger CD, Westphall MS, Pagliarini DJ, Coon JJ. Amine-reactive neutron-encoded labels for highly plexed proteomic quantitation. Molecular & Cellular Proteomics : McP. 12: 3360-9. PMID 23882030 DOI: 10.1074/mcp.M113.032011  0.96
2013 Still AJ, Floyd BJ, Hebert AS, Bingman CA, Carson JJ, Gunderson DR, Dolan BK, Grimsrud PA, Dittenhafer-Reed KE, Stapleton DS, Keller MP, Westphall MS, Denu JM, Attie AD, Coon JJ, et al. Quantification of mitochondrial acetylation dynamics highlights prominent sites of metabolic regulation. The Journal of Biological Chemistry. 288: 26209-19. PMID 23864654 DOI: 10.1074/jbc.M113.483396  0.92
2013 Merrill AE, Coon JJ. Quantifying proteomes and their post-translational modifications by stable isotope label-based mass spectrometry. Current Opinion in Chemical Biology. 17: 779-86. PMID 23835517 DOI: 10.1016/j.cbpa.2013.06.011  0.96
2013 Moussavi-Harami SF, Annis DS, Ma W, Berry SM, Coughlin EE, Strotman LN, Maurer LM, Westphall MS, Coon JJ, Mosher DF, Beebe DJ. Characterization of molecules binding to the 70K N-terminal region of fibronectin by IFAST purification coupled with mass spectrometry. Journal of Proteome Research. 12: 3393-404. PMID 23750785 DOI: 10.1021/pr400225p  0.96
2013 Ledvina AR, Rose CM, McAlister GC, Syka JE, Westphall MS, Griep-Raming J, Schwartz JC, Coon JJ. Activated ion ETD performed in a modified collision cell on a hybrid QLT-Oribtrap mass spectrometer. Journal of the American Society For Mass Spectrometry. 24: 1623-33. PMID 23677544 DOI: 10.1007/s13361-013-0621-1  0.96
2013 Rose CM, Merrill AE, Bailey DJ, Hebert AS, Westphall MS, Coon JJ. Neutron encoded labeling for peptide identification. Analytical Chemistry. 85: 5129-37. PMID 23638792 DOI: 10.1021/ac400476w  0.96
2013 Rose CM, Russell JD, Ledvina AR, McAlister GC, Westphall MS, Griep-Raming J, Schwartz JC, Coon JJ, Syka JE. Multipurpose dissociation cell for enhanced ETD of intact protein species. Journal of the American Society For Mass Spectrometry. 24: 816-27. PMID 23609185 DOI: 10.1007/s13361-013-0622-0  0.96
2013 Russell JD, Scalf M, Book AJ, Ladror DT, Vierstra RD, Smith LM, Coon JJ. Characterization and quantification of intact 26S proteasome proteins by real-time measurement of intrinsic fluorescence prior to top-down mass spectrometry. Plos One. 8: e58157. PMID 23536786 DOI: 10.1371/journal.pone.0058157  0.96
2013 Hebert AS, Merrill AE, Bailey DJ, Still AJ, Westphall MS, Strieter ER, Pagliarini DJ, Coon JJ. Neutron-encoded mass signatures for multiplexed proteome quantification. Nature Methods. 10: 332-4. PMID 23435260 DOI: 10.1038/nmeth.2378  0.96
2013 Tao WA, Coon J. 2012 ASMS Fall Workshop: mass spectrometry-based phosphorylation analysis and phosphoproteomics. Journal of the American Society For Mass Spectrometry. 24: 464-5. PMID 23381688 DOI: 10.1007/s13361-012-0562-0  0.96
2013 Vincent CE, Potts GK, Ulbrich A, Westphall MS, Atwood JA, Coon JJ, Weatherly DB. Segmentation of precursor mass range using "tiling" approach increases peptide identifications for MS1-based label-free quantification. Analytical Chemistry. 85: 2825-32. PMID 23350991 DOI: 10.1021/ac303352n  0.96
2013 Wenger CD, Coon JJ. A proteomics search algorithm specifically designed for high-resolution tandem mass spectra. Journal of Proteome Research. 12: 1377-86. PMID 23323968 DOI: 10.1021/pr301024c  0.96
2013 Hebert AS, Dittenhafer-Reed KE, Yu W, Bailey DJ, Selen ES, Boersma MD, Carson JJ, Tonelli M, Balloon AJ, Higbee AJ, Westphall MS, Pagliarini DJ, Prolla TA, Assadi-Porter F, Roy S, ... ... Coon JJ, et al. Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome. Molecular Cell. 49: 186-99. PMID 23201123 DOI: 10.1016/j.molcel.2012.10.024  0.96
2013 Vincent CE, Rensvold JW, Westphall MS, Pagliarini DJ, Coon JJ. Automated gas-phase purification for accurate, multiplexed quantification on a stand-alone ion-trap mass spectrometer. Analytical Chemistry. 85: 2079-86. PMID 23046161 DOI: 10.1021/ac302156t  0.96
2012 Grimsrud PA, Carson JJ, Hebert AS, Hubler SL, Niemi NM, Bailey DJ, Jochem A, Stapleton DS, Keller MP, Westphall MS, Yandell BS, Attie AD, Coon JJ, Pagliarini DJ. A quantitative map of the liver mitochondrial phosphoproteome reveals posttranslational control of ketogenesis. Cell Metabolism. 16: 672-83. PMID 23140645 DOI: 10.1016/j.cmet.2012.10.004  0.96
2012 Yang C, Park AC, Davis NA, Russell JD, Kim B, Brand DD, Lawrence MJ, Ge Y, Westphall MS, Coon JJ, Greenspan DS. Comprehensive mass spectrometric mapping of the hydroxylated amino acid residues of the α1(V) collagen chain. The Journal of Biological Chemistry. 287: 40598-610. PMID 23060441 DOI: 10.1074/jbc.M112.406850  0.96
2012 Van Etten J, Schagat TL, Hrit J, Weidmann CA, Brumbaugh J, Coon JJ, Goldstrohm AC. Human Pumilio proteins recruit multiple deadenylases to efficiently repress messenger RNAs. The Journal of Biological Chemistry. 287: 36370-83. PMID 22955276 DOI: 10.1074/jbc.M112.373522  0.96
2012 Peterson AC, Russell JD, Bailey DJ, Westphall MS, Coon JJ. Parallel reaction monitoring for high resolution and high mass accuracy quantitative, targeted proteomics. Molecular & Cellular Proteomics : McP. 11: 1475-88. PMID 22865924 DOI: 10.1074/mcp.O112.020131  0.96
2012 Volkening JD, Bailey DJ, Rose CM, Grimsrud PA, Howes-Podoll M, Venkateshwaran M, Westphall MS, Ané JM, Coon JJ, Sussman MR. A proteogenomic survey of the Medicago truncatula genome. Molecular & Cellular Proteomics : McP. 11: 933-44. PMID 22774004 DOI: 10.1074/mcp.M112.019471  0.96
2012 Rose CM, Venkateshwaran M, Grimsrud PA, Westphall MS, Sussman MR, Coon JJ, Ané JM. Medicago PhosphoProtein Database: a repository for Medicago truncatula phosphoprotein data. Frontiers in Plant Science. 3: 122. PMID 22701463 DOI: 10.3389/fpls.2012.00122  0.96
2012 Rose CM, Venkateshwaran M, Volkening JD, Grimsrud PA, Maeda J, Bailey DJ, Park K, Howes-Podoll M, den Os D, Yeun LH, Westphall MS, Sussman MR, Ané JM, Coon JJ. Rapid phosphoproteomic and transcriptomic changes in the rhizobia-legume symbiosis. Molecular & Cellular Proteomics : McP. 11: 724-44. PMID 22683509 DOI: 10.1074/mcp.M112.019208  0.96
2012 Ledvina AR, Chung TW, Hui R, Coon JJ, Ture?ek F. Cascade dissociations of peptide cation-radicals. Part 2. Infrared multiphoton dissociation and mechanistic studies of z-ions from pentapeptides. Journal of the American Society For Mass Spectrometry. 23: 1351-63. PMID 22669762 DOI: 10.1007/s13361-012-0409-8  0.96
2012 Chung TW, Hui R, Ledvina A, Coon JJ, Ture?ek F. Cascade dissociations of peptide cation-radicals. Part 1. Scope and effects of amino acid residues in penta-, nona-, and decapeptides. Journal of the American Society For Mass Spectrometry. 23: 1336-50. PMID 22669761 DOI: 10.1007/s13361-012-0408-9  0.96
2012 Bailey DJ, Rose CM, McAlister GC, Brumbaugh J, Yu P, Wenger CD, Westphall MS, Thomson JA, Coon JJ. Instant spectral assignment for advanced decision tree-driven mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 109: 8411-6. PMID 22586074 DOI: 10.1073/pnas.1205292109  0.96
2012 Ledvina AR, Lee MV, McAlister GC, Westphall MS, Coon JJ. Infrared multiphoton dissociation for quantitative shotgun proteomics. Analytical Chemistry. 84: 4513-9. PMID 22480380 DOI: 10.1021/ac300367p  0.96
2012 Brumbaugh J, Hou Z, Russell JD, Howden SE, Yu P, Ledvina AR, Coon JJ, Thomson JA. Phosphorylation regulates human OCT4. Proceedings of the National Academy of Sciences of the United States of America. 109: 7162-8. PMID 22474382 DOI: 10.1073/pnas.1203874109  0.96
2012 McAlister GC, Russell JD, Rumachik NG, Hebert AS, Syka JE, Geer LY, Westphall MS, Pagliarini DJ, Coon JJ. Analysis of the acidic proteome with negative electron-transfer dissociation mass spectrometry. Analytical Chemistry. 84: 2875-82. PMID 22335612 DOI: 10.1021/ac203430u  0.96
2012 Rumachik NG, McAlister GC, Russell JD, Bailey DJ, Wenger CD, Coon JJ. Characterizing peptide neutral losses induced by negative electron-transfer dissociation (NETD). Journal of the American Society For Mass Spectrometry. 23: 718-27. PMID 22290482 DOI: 10.1007/s13361-011-0331-5  0.96
2011 Li W, Song C, Bailey DJ, Tseng GC, Coon JJ, Wysocki VH. Statistical analysis of electron transfer dissociation pairwise fragmentation patterns. Analytical Chemistry. 83: 9540-5. PMID 22022956 DOI: 10.1021/ac202327r  0.96
2011 Brumbaugh J, Rose CM, Phanstiel DH, Thomson JA, Coon JJ. Proteomics and pluripotency. Critical Reviews in Biochemistry and Molecular Biology. 46: 493-506. PMID 21999516 DOI: 10.3109/10409238.2011.624491  0.96
2011 Phanstiel DH, Brumbaugh J, Wenger CD, Tian S, Probasco MD, Bailey DJ, Swaney DL, Tervo MA, Bolin JM, Ruotti V, Stewart R, Thomson JA, Coon JJ. Proteomic and phosphoproteomic comparison of human ES and iPS cells. Nature Methods. 8: 821-7. PMID 21983960 DOI: 10.1038/nmeth.1699  0.96
2011 Wenger CD, Lee MV, Hebert AS, McAlister GC, Phanstiel DH, Westphall MS, Coon JJ. Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging. Nature Methods. 8: 933-5. PMID 21963608 DOI: 10.1038/nmeth.1716  0.96
2011 Vasicek LA, Ledvina AR, Shaw J, Griep-Raming J, Westphall MS, Coon JJ, Brodbelt JS. Implementing photodissociation in an Orbitrap mass spectrometer. Journal of the American Society For Mass Spectrometry. 22: 1105-8. PMID 21953052 DOI: 10.1007/s13361-011-0119-7  0.96
2011 Ledvina AR, Savitski MM, Zubarev AR, Good DM, Coon JJ, Zubarev RA. Increased throughput of proteomics analysis by multiplexing high-resolution tandem mass spectra. Analytical Chemistry. 83: 7651-6. PMID 21913643 DOI: 10.1021/ac201843e  0.96
2011 Lee MV, Topper SE, Hubler SL, Hose J, Wenger CD, Coon JJ, Gasch AP. A dynamic model of proteome changes reveals new roles for transcript alteration in yeast. Molecular Systems Biology. 7: 514. PMID 21772262 DOI: 10.1038/msb.2011.48  0.96
2011 Xia Q, Lee MV, Rose CM, Marsh AJ, Hubler SL, Wenger CD, Coon JJ. Characterization and diagnostic value of amino acid side chain neutral losses following electron-transfer dissociation. Journal of the American Society For Mass Spectrometry. 22: 255-64. PMID 21472585 DOI: 10.1007/s13361-010-0029-0  0.96
2011 McAlister GC, Phanstiel DH, Brumbaugh J, Westphall MS, Coon JJ. Higher-energy collision-activated dissociation without a dedicated collision cell. Molecular & Cellular Proteomics : McP. 10: O111.009456. PMID 21393638 DOI: 10.1074/mcp.O111.009456  0.96
2011 Russell JD, Hilger RT, Ladror DT, Tervo MA, Scalf M, Shortreed MR, Coon JJ, Smith LM. Parallel detection of intrinsic fluorescence from peptides and proteins for quantification during mass spectrometric analysis. Analytical Chemistry. 83: 2187-93. PMID 21314137 DOI: 10.1021/ac103023q  0.96
2011 Wenger CD, Phanstiel DH, Lee MV, Bailey DJ, Coon JJ. COMPASS: a suite of pre- and post-search proteomics software tools for OMSSA. Proteomics. 11: 1064-74. PMID 21298793 DOI: 10.1002/pmic.201000616  0.96
2010 Ledvina AR, Beauchene NA, McAlister GC, Syka JE, Schwartz JC, Griep-Raming J, Westphall MS, Coon JJ. Activated-ion electron transfer dissociation improves the ability of electron transfer dissociation to identify peptides in a complex mixture. Analytical Chemistry. 82: 10068-74. PMID 21062032 DOI: 10.1021/ac1020358  0.96
2010 Xia Q, Good DM, Wenger CD, Coon JJ. Intellinsity: a tool for visualization and analysis of liquid chromatography/tandem mass spectrometry sampling events. Rapid Communications in Mass Spectrometry : Rcm. 24: 3217-8. PMID 20941771 DOI: 10.1002/rcm.4743  0.96
2010 Peterson AC, McAlister GC, Quarmby ST, Griep-Raming J, Coon JJ. Development and characterization of a GC-enabled QLT-Orbitrap for high-resolution and high-mass accuracy GC/MS. Analytical Chemistry. 82: 8618-28. PMID 20815337 DOI: 10.1021/ac101757m  0.96
2010 Mischak H, Allmaier G, Apweiler R, Attwood T, Baumann M, Benigni A, Bennett SE, Bischoff R, Bongcam-Rudloff E, Capasso G, Coon JJ, D'Haese P, Dominiczak AF, Dakna M, Dihazi H, et al. Recommendations for biomarker identification and qualification in clinical proteomics. Science Translational Medicine. 2: 46ps42. PMID 20739680 DOI: 10.1126/scitranslmed.3001249  0.96
2010 Good DM, Zürbig P, Argilés A, Bauer HW, Behrens G, Coon JJ, Dakna M, Decramer S, Delles C, Dominiczak AF, Ehrich JH, Eitner F, Fliser D, Frommberger M, Ganser A, et al. Naturally occurring human urinary peptides for use in diagnosis of chronic kidney disease. Molecular & Cellular Proteomics : McP. 9: 2424-37. PMID 20616184 DOI: 10.1074/mcp.M110.001917  0.96
2010 Wenger CD, McAlister GC, Xia Q, Coon JJ. Sub-part-per-million precursor and product mass accuracy for high-throughput proteomics on an electron transfer dissociation-enabled orbitrap mass spectrometer. Molecular & Cellular Proteomics : McP. 9: 754-63. PMID 20124352 DOI: 10.1074/mcp.M900541-MCP200  0.96
2010 Swaney DL, Wenger CD, Coon JJ. Value of using multiple proteases for large-scale mass spectrometry-based proteomics. Journal of Proteome Research. 9: 1323-9. PMID 20113005 DOI: 10.1021/pr900863u  0.96
2010 Grimsrud PA, Swaney DL, Wenger CD, Beauchene NA, Coon JJ. Phosphoproteomics for the masses. Acs Chemical Biology. 5: 105-19. PMID 20047291 DOI: 10.1021/cb900277e  0.96
2010 McAlister GC, Phanstiel D, Wenger CD, Lee MV, Coon JJ. Analysis of tandem mass spectra by FTMS for improved large-scale proteomics with superior protein quantification. Analytical Chemistry. 82: 316-22. PMID 19938823 DOI: 10.1021/ac902005s  0.96
2010 Grimsrud PA, den Os D, Wenger CD, Swaney DL, Schwartz D, Sussman MR, Ané JM, Coon JJ. Large-scale phosphoprotein analysis in Medicago truncatula roots provides insight into in vivo kinase activity in legumes. Plant Physiology. 152: 19-28. PMID 19923235 DOI: 10.1104/pp.109.149625  0.96
2010 Good DM, Wenger CD, Coon JJ. The effect of interfering ions on search algorithm performance for electron-transfer dissociation data. Proteomics. 10: 164-7. PMID 19899080 DOI: 10.1002/pmic.200900570  0.96
2009 Good DM, Coon JJ. Mass spectrometric analysis of body fluids for biomarker discovery. Methods in Molecular Biology (Clifton, N.J.). 566: 277-91. PMID 20058178 DOI: 10.1007/978-1-59745-562-6_18  0.96
2009 Ledvina AR, McAlister GC, Gardner MW, Smith SI, Madsen JA, Schwartz JC, Stafford GC, Syka JE, Brodbelt JS, Coon JJ. Infrared photoactivation reduces peptide folding and hydrogen-atom migration following ETD tandem mass spectrometry. Angewandte Chemie (International Ed. in English). 48: 8526-8. PMID 19795429 DOI: 10.1002/anie.200903557  0.96
2009 Madsen JA, Gardner MW, Smith SI, Ledvina AR, Coon JJ, Schwartz JC, Stafford GC, Brodbelt JS. Top-down protein fragmentation by infrared multiphoton dissociation in a dual pressure linear ion trap. Analytical Chemistry. 81: 8677-86. PMID 19785447 DOI: 10.1021/ac901554z  0.96
2009 Gardner MW, Smith SI, Ledvina AR, Madsen JA, Coon JJ, Schwartz JC, Stafford GC, Brodbelt JS. Infrared multiphoton dissociation of peptide cations in a dual pressure linear ion trap mass spectrometer. Analytical Chemistry. 81: 8109-18. PMID 19739654 DOI: 10.1021/ac901313m  0.96
2009 Second TP, Blethrow JD, Schwartz JC, Merrihew GE, MacCoss MJ, Swaney DL, Russell JD, Coon JJ, Zabrouskov V. Dual-pressure linear ion trap mass spectrometer improving the analysis of complex protein mixtures. Analytical Chemistry. 81: 7757-65. PMID 19689114 DOI: 10.1021/ac901278y  0.96
2009 Haubitz M, Good DM, Woywodt A, Haller H, Rupprecht H, Theodorescu D, Dakna M, Coon JJ, Mischak H. Identification and validation of urinary biomarkers for differential diagnosis and evaluation of therapeutic intervention in anti-neutrophil cytoplasmic antibody-associated vasculitis. Molecular & Cellular Proteomics : McP. 8: 2296-307. PMID 19564150 DOI: 10.1074/mcp.M800529-MCP200  0.96
2009 Duellman SJ, Thompson KL, Coon JJ, Burgess RR. Phosphorylation sites of Epstein-Barr virus EBNA1 regulate its function. The Journal of General Virology. 90: 2251-9. PMID 19439552 DOI: 10.1099/vir.0.012260-0  0.96
2009 McGivern JV, Swaney DL, Coon JJ, Sheets MD. Toward defining the phosphoproteome of Xenopus laevis embryos. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 238: 1433-43. PMID 19384857 DOI: 10.1002/dvdy.21941  0.96
2009 Good DM, Wenger CD, McAlister GC, Bai DL, Hunt DF, Coon JJ. Post-acquisition ETD spectral processing for increased peptide identifications. Journal of the American Society For Mass Spectrometry. 20: 1435-40. PMID 19362853 DOI: 10.1016/j.jasms.2009.03.006  0.96
2009 Sadygov RG, Good DM, Swaney DL, Coon JJ. A new probabilistic database search algorithm for ETD spectra. Journal of Proteome Research. 8: 3198-205. PMID 19354237 DOI: 10.1021/pr900153b  0.96
2009 Zürbig P, Decramer S, Dakna M, Jantos J, Good DM, Coon JJ, Bandin F, Mischak H, Bascands JL, Schanstra JP. The human urinary proteome reveals high similarity between kidney aging and chronic kidney disease. Proteomics. 9: 2108-17. PMID 19296547 DOI: 10.1002/pmic.200800560  0.8
2009 Phanstiel D, Unwin R, McAlister GC, Coon JJ. Peptide quantification using 8-plex isobaric tags and electron transfer dissociation tandem mass spectrometry. Analytical Chemistry. 81: 1693-8. PMID 19154110 DOI: 10.1021/ac8019202  0.96
2009 Swaney DL, Wenger CD, Thomson JA, Coon JJ. Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 106: 995-1000. PMID 19144917 DOI: 10.1073/pnas.0811964106  0.96
2009 Mischak H, Coon JJ, Novak J, Weissinger EM, Schanstra JP, Dominiczak AF. Capillary electrophoresis-mass spectrometry as a powerful tool in biomarker discovery and clinical diagnosis: an update of recent developments. Mass Spectrometry Reviews. 28: 703-24. PMID 18973238 DOI: 10.1002/mas.20205  0.96
2008 Coon JJ, Zürbig P, Dakna M, Dominiczak AF, Decramer S, Fliser D, Frommberger M, Golovko I, Good DM, Herget-Rosenthal S, Jankowski J, Julian BA, Kellmann M, Kolch W, Massy Z, et al. CE-MS analysis of the human urinary proteome for biomarker discovery and disease diagnostics. Proteomics. Clinical Applications. 2: 964. PMID 20130789 DOI: 10.1002/prca.200800024  0.96
2008 Frey BL, Krusemark CJ, Ledvina AR, Coon JJ, Belshaw PJ, Smith LM. Ion-Ion Reactions with Fixed-Charge Modified Proteins to Produce Ions in a Single, Very High Charge State. International Journal of Mass Spectrometry. 276: 136-143. PMID 19802328 DOI: 10.1016/j.ijms.2008.07.029  0.96
2008 Theodorescu D, Schiffer E, Bauer HW, Douwes F, Eichhorn F, Polley R, Schmidt T, Schöfer W, Zürbig P, Good DM, Coon JJ, Mischak H. Discovery and validation of urinary biomarkers for prostate cancer. Proteomics. Clinical Applications. 2: 556-570. PMID 19759844 DOI: 10.1002/prca.200780082  0.8
2008 McAlister GC, Kiessel SE, Coon JJ. In vacuo formation of peptide-metal coordination complexes. International Journal of Mass Spectrometry. 276: 149-152. PMID 19424441 DOI: 10.1016/j.ijms.2008.05.001  0.96
2008 Swaney DL, McAlister GC, Coon JJ. Decision tree-driven tandem mass spectrometry for shotgun proteomics. Nature Methods. 5: 959-64. PMID 18931669 DOI: 10.1038/nmeth.1260  0.96
2008 Brumbaugh J, Phanstiel D, Coon JJ. Unraveling the histone's potential: a proteomics perspective. Epigenetics. 3: 254-7. PMID 18849650  0.96
2008 Phanstiel D, Zhang Y, Marto JA, Coon JJ. Peptide and protein quantification using iTRAQ with electron transfer dissociation. Journal of the American Society For Mass Spectrometry. 19: 1255-62. PMID 18620867 DOI: 10.1016/j.jasms.2008.05.023  0.96
2008 McAlister GC, Berggren WT, Griep-Raming J, Horning S, Makarov A, Phanstiel D, Stafford G, Swaney DL, Syka JE, Zabrouskov V, Coon JJ. A proteomics grade electron transfer dissociation-enabled hybrid linear ion trap-orbitrap mass spectrometer. Journal of Proteome Research. 7: 3127-36. PMID 18613715 DOI: 10.1021/pr800264t  0.96
2008 Rossing K, Mischak H, Dakna M, Zürbig P, Novak J, Julian BA, Good DM, Coon JJ, Tarnow L, Rossing P. Urinary proteomics in diabetes and CKD. Journal of the American Society of Nephrology : Jasn. 19: 1283-90. PMID 18448586 DOI: 10.1681/ASN.2007091025  0.8
2008 Hubler SL, Jue A, Keith J, McAlister GC, Craciun G, Coon JJ. Valence parity renders z(*)-type ions chemically distinct. Journal of the American Chemical Society. 130: 6388-94. PMID 18444621 DOI: 10.1021/ja7099985  0.96
2008 Phanstiel D, Brumbaugh J, Berggren WT, Conard K, Feng X, Levenstein ME, McAlister GC, Thomson JA, Coon JJ. Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells. Proceedings of the National Academy of Sciences of the United States of America. 105: 4093-8. PMID 18326628 DOI: 10.1073/pnas.0710515105  0.96
2008 Zimmerli LU, Schiffer E, Zürbig P, Good DM, Kellmann M, Mouls L, Pitt AR, Coon JJ, Schmieder RE, Peter KH, Mischak H, Kolch W, Delles C, Dominiczak AF. Urinary proteomic biomarkers in coronary artery disease. Molecular & Cellular Proteomics : McP. 7: 290-8. PMID 17951555 DOI: 10.1074/mcp.M700394-MCP200  0.8
2007 Julian BA, Wittke S, Novak J, Good DM, Coon JJ, Kellmann M, Zürbig P, Schiffer E, Haubitz M, Moldoveanu Z, Calcatera SM, Wyatt RJ, Sýkora J, Sládková E, Hes O, et al. Electrophoretic methods for analysis of urinary polypeptides in IgA-associated renal diseases. Electrophoresis. 28: 4469-83. PMID 18004714 DOI: 10.1002/elps.200700237  0.96
2007 Good DM, Thongboonkerd V, Novak J, Bascands JL, Schanstra JP, Coon JJ, Dominiczak A, Mischak H. Body fluid proteomics for biomarker discovery: lessons from the past hold the key to success in the future. Journal of Proteome Research. 6: 4549-55. PMID 17970587 DOI: 10.1021/pr070529w  0.8
2007 Lecchi S, Nelson CJ, Allen KE, Swaney DL, Thompson KL, Coon JJ, Sussman MR, Slayman CW. Tandem phosphorylation of Ser-911 and Thr-912 at the C terminus of yeast plasma membrane H+-ATPase leads to glucose-dependent activation. The Journal of Biological Chemistry. 282: 35471-81. PMID 17932035 DOI: 10.1074/jbc.M706094200  0.96
2007 Williams DK, McAlister GC, Good DM, Coon JJ, Muddiman DC. Dual electrospray ion source for electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer. Analytical Chemistry. 79: 7916-9. PMID 17867655 DOI: 10.1021/ac071444h  0.96
2007 Good DM, Wirtala M, McAlister GC, Coon JJ. Performance characteristics of electron transfer dissociation mass spectrometry. Molecular & Cellular Proteomics : McP. 6: 1942-51. PMID 17673454 DOI: 10.1074/mcp.M700073-MCP200  0.96
2007 Khidekel N, Ficarro SB, Clark PM, Bryan MC, Swaney DL, Rexach JE, Sun YE, Coon JJ, Peters EC, Hsieh-Wilson LC. Probing the dynamics of O-GlcNAc glycosylation in the brain using quantitative proteomics. Nature Chemical Biology. 3: 339-48. PMID 17496889 DOI: 10.1038/nchembio881  0.96
2007 McAlister GC, Phanstiel D, Good DM, Berggren WT, Coon JJ. Implementation of electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer. Analytical Chemistry. 79: 3525-34. PMID 17441688 DOI: 10.1021/ac070020k  0.96
2007 Chi A, Huttenhower C, Geer LY, Coon JJ, Syka JE, Bai DL, Shabanowitz J, Burke DJ, Troyanskaya OG, Hunt DF. Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 104: 2193-8. PMID 17287358 DOI: 10.1073/pnas.0607084104  0.96
2007 Swaney DL, McAlister GC, Wirtala M, Schwartz JC, Syka JE, Coon JJ. Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors. Analytical Chemistry. 79: 477-85. PMID 17222010 DOI: 10.1021/ac061457f  0.96
2006 Yue GE, Roper MG, Balchunas C, Pulsipher A, Coon JJ, Shabanowitz J, Hunt DF, Landers JP, Ferrance JP. Protein digestion and phosphopeptide enrichment on a glass microchip. Analytica Chimica Acta. 564: 116-22. PMID 17723369 DOI: 10.1016/j.aca.2005.11.003  0.96
2006 Mikesh LM, Ueberheide B, Chi A, Coon JJ, Syka JE, Shabanowitz J, Hunt DF. The utility of ETD mass spectrometry in proteomic analysis. Biochimica Et Biophysica Acta. 1764: 1811-22. PMID 17118725 DOI: 10.1016/j.bbapap.2006.10.003  0.96
2006 Good DM, Coon JJ. Advancing proteomics with ion/ion chemistry. Biotechniques. 40: 783-9. PMID 16774122  0.8
2005 Coon JJ, Ueberheide B, Syka JE, Dryhurst DD, Ausio J, Shabanowitz J, Hunt DF. Protein identification using sequential ion/ion reactions and tandem mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 102: 9463-8. PMID 15983376 DOI: 10.1073/pnas.0503189102  0.96
2005 Coon JJ, Shabanowitz J, Hunt DF, Syka JE. Electron transfer dissociation of peptide anions. Journal of the American Society For Mass Spectrometry. 16: 880-2. PMID 15907703 DOI: 10.1016/j.jasms.2005.01.015  0.96
2005 Coon JJ, Syka JE, Shabanowitz J, Hunt DF. Tandem mass spectrometry for peptide and protein sequence analysis. Biotechniques. 38: 519, 521, 523. PMID 15884666  0.96
2004 Schroeder MJ, Shabanowitz J, Schwartz JC, Hunt DF, Coon JJ. A neutral loss activation method for improved phosphopeptide sequence analysis by quadrupole ion trap mass spectrometry. Analytical Chemistry. 76: 3590-8. PMID 15228329 DOI: 10.1021/ac0497104  0.96
2004 Syka JE, Coon JJ, Schroeder MJ, Shabanowitz J, Hunt DF. Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 101: 9528-33. PMID 15210983 DOI: 10.1073/pnas.0402700101  0.96
2003 Coon JJ, Steele HA, Laipis PJ, Harrison WW. Direct atmospheric pressure coupling of polyacrylamide gel electrophoresis to mass spectrometry for rapid protein sequence analysis. Journal of Proteome Research. 2: 610-7. PMID 14692454  1
2002 Coon JJ, Steele HA, Laipis PJ, Harrison WW. Laser desorption-atmospheric pressure chemical ionization: a novel ion source for the direct coupling of polyacrylamide gel electrophoresis to mass spectrometry. Journal of Mass Spectrometry : Jms. 37: 1163-7. PMID 12447894 DOI: 10.1002/jms.385  1
2002 Coon JJ, Harrison WW. Laser desorption-atmospheric pressure chemical ionization mass spectrometry for the analysis of peptides from aqueous solutions. Analytical Chemistry. 74: 5600-5. PMID 12433094  1
2002 Coon JJ, McHale KJ, Harrison WW. Atmospheric pressure laser desorption/chemical ionization mass spectrometry: a new ionization method based on existing themes. Rapid Communications in Mass Spectrometry : Rcm. 16: 681-5. PMID 11921247 DOI: 10.1002/rcm.626  1
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